دورية أكاديمية

‘rtry’: An R package to support plant trait data preprocessing

التفاصيل البيبلوغرافية
العنوان: ‘rtry’: An R package to support plant trait data preprocessing
المؤلفون: Olee Hoi Ying Lam, Jens Kattge, Susanne Tautenhahn, Gerhard Boenisch, Kyle R. Kovach, Philip A. Townsend
المصدر: Ecology and Evolution, Vol 14, Iss 5, Pp n/a-n/a (2024)
بيانات النشر: Wiley, 2024.
سنة النشر: 2024
المجموعة: LCC:Ecology
مصطلحات موضوعية: biodiversity, data cleaning, data preprocessing, plant trait, R package, TRY database, Ecology, QH540-549.5
الوصف: Abstract Plant trait data are used to quantify how plants respond to environmental factors and can act as indicators of ecosystem function. Measured trait values are influenced by genetics, trade‐offs, competition, environmental conditions, and phenology. These interacting effects on traits are poorly characterized across taxa, and for many traits, measurement protocols are not standardized. As a result, ancillary information about growth and measurement conditions can be highly variable, requiring a flexible data structure. In 2007, the TRY initiative was founded as an integrated database of plant trait data, including ancillary attributes relevant to understanding and interpreting the trait values. The TRY database now integrates around 700 original and collective datasets and has become a central resource of plant trait data. These data are provided in a generic long‐table format, where a unique identifier links different trait records and ancillary data measured on the same entity. Due to the high number of trait records, plant taxa, and types of traits and ancillary data released from the TRY database, data preprocessing is necessary but not straightforward. Here, we present the ‘rtry’ R package, specifically designed to support plant trait data exploration and filtering. By integrating a subset of existing R functions essential for preprocessing, ‘rtry’ avoids the need for users to navigate the extensive R ecosystem and provides the functions under a consistent syntax. ‘rtry’ is therefore easy to use even for beginners in R. Notably, ‘rtry’ does not support data retrieval or analysis; rather, it focuses on the preprocessing tasks to optimize data quality. While ‘rtry’ primarily targets TRY data, its utility extends to data from other sources, such as the National Ecological Observatory Network (NEON). The ‘rtry’ package is available on the Comprehensive R Archive Network (CRAN; https://cran.rTest‐project.org/package=rtry) and the GitHub Wiki (https://github.com/MPITest‐BGC‐Functional‐Biogeography/rtry/wiki) along with comprehensive documentation and vignettes describing detailed data preprocessing workflows.
نوع الوثيقة: article
وصف الملف: electronic resource
اللغة: English
تدمد: 2045-7758
العلاقة: https://doaj.org/toc/2045-7758Test
DOI: 10.1002/ece3.11292
الوصول الحر: https://doaj.org/article/b7d5beaf8d1744019083ab485ee837b2Test
رقم الانضمام: edsdoj.b7d5beaf8d1744019083ab485ee837b2
قاعدة البيانات: Directory of Open Access Journals
الوصف
تدمد:20457758
DOI:10.1002/ece3.11292