دورية أكاديمية
Critical assessment of protein intrinsic disorder prediction (CAID) - Results of round 2
| العنوان: | Critical assessment of protein intrinsic disorder prediction (CAID) - Results of round 2 |
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| المؤلفون: | Del Conte A., Mehdiabadi M., Bouhraoua A., Monzon A. M., Tosatto S. C. E., Piovesan D. |
| المساهمون: | Del Conte, A., Mehdiabadi, M., Bouhraoua, A., Monzon, A. M., Tosatto, S. C. E., Piovesan, D. |
| بيانات النشر: | John Wiley and Sons Inc |
| سنة النشر: | 2023 |
| المجموعة: | Padua Research Archive (IRIS - Università degli Studi di Padova) |
| مصطلحات موضوعية: | benchmarking, CAID, Critical assessment of protein intrinsic disorder prediction, intrinsic protein disorder |
| الوصف: | Protein intrinsic disorder (ID) is a complex and context-dependent phenomenon that covers a continuum between fully disordered states and folded states with long dynamic regions. The lack of a ground truth that fits all ID flavors and the potential for order-to-disorder transitions depending on specific conditions makes ID prediction challenging. The CAID2 challenge aimed to evaluate the performance of different prediction methods across different benchmarks, leveraging the annotation provided by the DisProt database, which stores the coordinates of ID regions when there is experimental evidence in the literature. The CAID2 challenge demonstrated varying performance of different prediction methods across different benchmarks, highlighting the need for continued development of more versatile and efficient prediction software. Depending on the application, researchers may need to balance performance with execution time when selecting a predictor. Methods based on AlphaFold2 seem to be good ID predictors but they are better at detecting absence of order rather than ID regions as defined in DisProt. The CAID2 predictors can be freely used through the CAID Prediction Portal, and CAID has been integrated into OpenEBench, which will become the official platform for running future CAID challenges. |
| نوع الوثيقة: | article in journal/newspaper |
| اللغة: | English |
| العلاقة: | info:eu-repo/semantics/altIdentifier/pmid/37621223; info:eu-repo/semantics/altIdentifier/wos/WOS:001063550400001; journal:PROTEINS; https://hdl.handle.net/11577/3495693Test; info:eu-repo/semantics/altIdentifier/scopus/2-s2.0-85169117009 |
| DOI: | 10.1002/prot.26582 |
| الإتاحة: | https://doi.org/10.1002/prot.26582Test https://hdl.handle.net/11577/3495693Test |
| حقوق: | info:eu-repo/semantics/openAccess |
| رقم الانضمام: | edsbas.EE0AFFAB |
| قاعدة البيانات: | BASE |
| DOI: | 10.1002/prot.26582 |
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