دورية أكاديمية
SeqBox: RNAseq/ChIPseq reproducible analysis on a consumer game computer
| العنوان: | SeqBox: RNAseq/ChIPseq reproducible analysis on a consumer game computer |
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| المؤلفون: | BECCUTI, Marco, CORDERO, Francesca, ARIGONI, MADDALENA, PANERO, RICCARDO, AMPARORE, ELVIO GILBERTO, DONATELLI, Susanna, CALOGERO, Raffaele Adolfo |
| المساهمون: | Beccuti, Marco, Cordero, Francesca, Arigoni, Maddalena, Panero, Riccardo, Amparore, Elvio G, Donatelli, Susanna, Calogero, Raffaele A. |
| سنة النشر: | 2017 |
| المجموعة: | Università degli studi di Torino: AperTo (Archivio Istituzionale ad Accesso Aperto) |
| الوصف: | Short reads sequencing technology has been used for more than a decade now. However, the analysis of RNAseq and ChIPseq data is still computational demanding and the simple access to raw data does not guarantee results reproducibility between laboratories. To address these two aspects, we developed SeqBox, a cheap, efficient and reproducible RNAseq/ChIPseq hardware/software solution based on NUC6I7KYK mini-PC (an Intel consumer game computer with a fast processor and a high performance SSD disk), and Docker container platform. In SeqBox the analysis of RNAseq and ChIPseq data is supported by a friendly GUI. This allows access to fast and reproducible analysis also to scientists with/without scripting experience. |
| نوع الوثيقة: | article in journal/newspaper |
| اللغة: | English |
| العلاقة: | info:eu-repo/semantics/altIdentifier/pmid/29069297; info:eu-repo/semantics/altIdentifier/wos/WOS:000426813500022; firstpage:1; lastpage:2; numberofpages:2; journal:BIOINFORMATICS; http://hdl.handle.net/2318/1650770Test; info:eu-repo/semantics/altIdentifier/scopus/2-s2.0-85042943380 |
| DOI: | 10.1093/bioinformatics/btx674 |
| الإتاحة: | https://doi.org/10.1093/bioinformatics/btx674Test http://hdl.handle.net/2318/1650770Test |
| حقوق: | info:eu-repo/semantics/openAccess |
| رقم الانضمام: | edsbas.DC1190BD |
| قاعدة البيانات: | BASE |
| DOI: | 10.1093/bioinformatics/btx674 |
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