دورية أكاديمية
Orexin neurons inhibit sleep to promote arousal
| العنوان: | Orexin neurons inhibit sleep to promote arousal |
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| المؤلفون: | Roberto De Luca, Stefano Nardone, Kevin P. Grace, Anne Venner, Michela Cristofolini, Sathyajit S. Bandaru, Lauren T. Sohn, Dong Kong, Takatoshi Mochizuki, Bianca Viberti, Lin Zhu, Antonino Zito, Thomas E. Scammell, Clifford B. Saper, Bradford B. Lowell, Patrick M. Fuller, Elda Arrigoni |
| سنة النشر: | 2022 |
| المجموعة: | Zenodo |
| مصطلحات موضوعية: | Orexin/Hypocretin, Ventrolateral Preoptic Nucleus, Brain circuits, In vivo optogenetics, ChannelRhodopsin-assisted circuit mapping, scRT-PCR, scRNA-seq, MERFISH |
| الوصف: | OVERVIEW The following README contains: i) the instruction to set up an R environment (R version 3.6.3) and to install R Studio on a Windows/macOS operative system; ii) the instructions to install Seurat 3.1.5 along with all its dependencies; iii) the software code used to generate all the plots and figure as showed in the manuscript. SYSTEM REQUIREMENTS The following analysis can be performed on a standard computer with sufficient RAM to support the in-memory operation required by Seurat 3.1.5. The installation of Seurat 3.1.5 and all its dependencies have been tested on both Windows (version 10 64-bit ) and macOS (Big Sur version 11.6.1) operating systems. ALL PACKAGES and DEPENDENCIES attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] biomaRt_2.42.1 Seurat_3.1.5 Matrix_1.4-0 [1] TH.data_1.1-0 Rtsne_0.15 colorspace_2.0-2 ellipsis_0.3.2 ggridges_0.5.3 leiden_0.3.9 [7] listenv_0.8.0 remotes_2.4.2 ggrepel_0.9.1 bit64_4.0.5 AnnotationDbi_1.48.0 fansi_1.0.2 [13] mvtnorm_1.1-3 mathjaxr_1.4-0 codetools_0.2-18 splines_3.6.3 mnormt_2.0.2 cachem_1.0.6 [19] TFisher_0.2.0 jsonlite_1.7.3 ica_1.0-2 dbplyr_2.1.1 cluster_2.1.2 png_0.1-7 [25] uwot_0.1.11 sctransform_0.3.3 BiocManager_1.30.16 compiler_3.6.3 httr_1.4.2 assertthat_0.2.1 [31] fastmap_1.1.0 lazyeval_0.2.2 cli_3.1.1 prettyunits_1.1.1 htmltools_0.5.2 tools_3.6.3 [37] rsvd_1.0.5 igraph_1.2.11 gtable_0.3.0 glue_1.6.1 RANN_2.6.1 reshape2_1.4.4 [43] dplyr_1.0.7 rappdirs_0.3.3 Rcpp_1.0.8 Biobase_2.46.0 vctrs_0.3.8 multtest_2.42.0 [49] ape_5.6-1 nlme_3.1-155 lmtest_0.9-39 stringr_1.4.0 globals_0.14.0 rbibutils_2.2.7 [55] lifecycle_1.0.1 irlba_2.3.5 XML_3.99-0.3 future_1.23.0 MASS_7.3-55 zoo_1.8-9 [61] scales_1.1.1 hms_1.1.1 parallel_3.6.3 sandwich_3.0-1 RColorBrewer_1.1-2 curl_4.3.2 [67] memoise_2.0.1 reticulate_1.24 pbapply_1.5-0 gridExtra_2.3 ggplot2_3.3.5 stringi_1.7.6 [73] RSQLite_2.2.7 mutoss_0.1-12 S4Vectors_0.24.4 plotrix_3.8-2 BiocGenerics_0.32.0 Rdpack_2.1.3 [79] rlang_1.0.1 pkgconfig_2.0.3 ... |
| نوع الوثيقة: | article in journal/newspaper |
| اللغة: | English, Old (ca.450-1100) |
| العلاقة: | https://zenodo.org/record/6570978Test; https://doi.org/10.5281/zenodo.6570978Test; oai:zenodo.org:6570978 |
| DOI: | 10.5281/zenodo.6570978 |
| الإتاحة: | https://doi.org/10.5281/zenodo.6570978Test https://doi.org/10.5281/zenodo.6570924Test https://zenodo.org/record/6570978Test |
| حقوق: | info:eu-repo/semantics/openAccess ; https://creativecommons.org/licenses/by/4.0/legalcodeTest |
| رقم الانضمام: | edsbas.BFC25DF6 |
| قاعدة البيانات: | BASE |
| DOI: | 10.5281/zenodo.6570978 |
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