كتاب
Structural and Functional Annotation of the Wheat Genome
| العنوان: | Structural and Functional Annotation of the Wheat Genome |
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| المؤلفون: | Choulet, Frédéric, Wang, Xi, Spannagl, Manuel, Swarbreck, David, Rimbert, Hélène, Leroy, Philippe, Lasserre-Zuber, Pauline, Papon, Nathan |
| المساهمون: | Génétique Diversité et Ecophysiologie des Céréales (GDEC), Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Université Clermont Auvergne (UCA), Institut Jacques Monod (IJM (UMR_7592)), Centre National de la Recherche Scientifique (CNRS)-Université Paris Cité (UPCité), PGSB, Helmholtz Zentrum München = German Research Center for Environmental Health (HMGU), Earlham Institute Norwich, Rudi Appels, Kellye Eversole, Catherine Feuillet, Dusti Gallagher |
| المصدر: | The Wheat Genome ; https://hal.science/hal-04297331Test ; Rudi Appels, Kellye Eversole, Catherine Feuillet, Dusti Gallagher. The Wheat Genome, Springer International Publishing, pp.51-73, 2024, Compendium of Plant Genomes, ⟨10.1007/978-3-031-38294-9_4⟩ |
| بيانات النشر: | HAL CCSD Springer International Publishing |
| سنة النشر: | 2024 |
| مصطلحات موضوعية: | Wheat genome Annotation Gene function Transposable elements, Wheat genome, Annotation, Gene function, Transposable elements, [SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Genomics [q-bio.GN], [SDV.BIBS]Life Sciences [q-bio]/Quantitative Methods [q-bio.QM] |
| الوصف: | International audience ; Wheat genome sequencing has passed through major steps in a decade, starting from the sequencing of large contiguous sequences obtained from chromosome-specific BAC libraries, to reach high-quality genome assemblies of a dozen of bread wheat varieties and wild relatives. While access to an assembled genome sequence is crucial for research, the resource that is mainly used by the community is not the sequence itself, but rather the annotated features, i.e., genes and transposable elements. In this chapter, we describe the work performed to predict the repertoire of 107 k high-confidence genes and 4 million TE copies in the hexaploid wheat genome (cultivar CHINESE SPRING; IWGSC RefSeq) and the procedures established to transfer the annotation through the different releases of genome assembly. Limitations and implications for building a wheat pangenome are discussed, as well as the possibilities for future improvements of structural annotation, and opportunities offered by novel approaches for functional annotation. |
| نوع الوثيقة: | book part |
| اللغة: | English |
| العلاقة: | hal-04297331; https://hal.science/hal-04297331Test; https://hal.science/hal-04297331/documentTest; https://hal.science/hal-04297331/file/978-3-031-38294-9_4.pdfTest |
| DOI: | 10.1007/978-3-031-38294-9_4 |
| الإتاحة: | https://doi.org/10.1007/978-3-031-38294-9_4Test https://hal.science/hal-04297331Test https://hal.science/hal-04297331/documentTest https://hal.science/hal-04297331/file/978-3-031-38294-9_4.pdfTest |
| حقوق: | info:eu-repo/semantics/OpenAccess |
| رقم الانضمام: | edsbas.3FDD3880 |
| قاعدة البيانات: | BASE |
| DOI: | 10.1007/978-3-031-38294-9_4 |
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