تقرير
Spatiotemporal 3D image registration for mesoscale studies of brain development
| العنوان: | Spatiotemporal 3D image registration for mesoscale studies of brain development |
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| المؤلفون: | Shuvaev, Sergey, Lazutkin, Alexander, Kiryanov, Roman, Anokhin, Konstantin, Enikolopov, Grigori, Koulakov, Alexei A |
| سنة النشر: | 2022 |
| المجموعة: | Cold Spring Harbor Laboratory: CSHL Institutional Repository |
| مصطلحات موضوعية: | bioinformatics, Investigative techniques and equipment, algorithms, animal, brain, computational biology, imaging, magnetic resonance imaging, mammal, mouse, neurodevelopment, organs types and functions, organs, tissues, organelles, cell types and functions, rodent, Whole Brain Circuit Mapping |
| الوصف: | Comparison of brain samples representing different developmental stages often necessitates registering the samples to common coordinates. Although the available software tools are successful in registering 3D images of adult brains, registration of perinatal brains remains challenging due to rapid growth-dependent morphological changes and variations in developmental pace between animals. To address these challenges, we introduce CORGI (Customizable Object Registration for Groups of Images), an algorithm for the registration of perinatal brains. First, we optimized image preprocessing to increase the algorithm's sensitivity to mismatches in registered images. Second, we developed an attention-gated simulated annealing procedure capable of focusing on the differences between perinatal brains. Third, we applied classical multidimensional scaling (CMDS) to align ("synchronize") brain samples in time, accounting for individual development paces. We tested CORGI on 28 samples of whole-mounted perinatal mouse brains (P0-P9) and compared its accuracy with other registration algorithms. Our algorithm offers a runtime of several minutes per brain on a laptop and automates such brain registration tasks as mapping brain data to atlases, comparing experimental groups, and monitoring brain development dynamics. |
| نوع الوثيقة: | report |
| وصف الملف: | application/pdf |
| اللغة: | English |
| العلاقة: | https://repository.cshl.edu/id/eprint/40542/1/2022.Shuvaev.brain_development.pdfTest; Shuvaev, Sergey, Lazutkin, Alexander, Kiryanov, Roman, Anokhin, Konstantin, Enikolopov, Grigori, Koulakov, Alexei A (March 2022) Spatiotemporal 3D image registration for mesoscale studies of brain development. Scientific Reports, 12 (1). p. 3648. ISSN 2045-2322 |
| DOI: | 10.1038/s41598-022-06871-8 |
| الإتاحة: | https://doi.org/10.1038/s41598-022-06871-8Test https://repository.cshl.edu/id/eprint/40542Test/ https://repository.cshl.edu/id/eprint/40542/1/2022.Shuvaev.brain_development.pdfTest https://www.ncbi.nlm.nih.gov/pubmed/35256622Test |
| حقوق: | cc_by |
| رقم الانضمام: | edsbas.30416C4C |
| قاعدة البيانات: | BASE |
| DOI: | 10.1038/s41598-022-06871-8 |
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