التفاصيل البيبلوغرافية
| العنوان: |
Supplemental information CartoCell, a high-content pipeline for 3D image analysis, unveils cell morphology patterns in epithelia |
| المؤلفون: |
Andrés-San Román, Jesús A., Gordillo-Vázquez, Carmen, Franco-Barranco, Daniel, Morat, Laura, Fernández-Espartero, Cecilia H., Baonza, Gabriel, Tagua, Antonio, Vicente-Munuera, Pablo, Palacios, Ana M., Gavilán, María P., Martín-Belmonte, Fernando, Annese, Valentina, Gómez-Gálvez, Pedro, Arganda-Carreras, Ignacio, Escudero, Luis M. |
| المساهمون: |
Tagua, Antonio, Vicente-Munuera, Pablo, Gavilán, María P., Martín-Belmonte, Fernando, Annese, Valentina, Gómez-Gálvez, Pedro, Escudero, Luis M. |
| بيانات النشر: |
Cell Press |
| سنة النشر: |
2023 |
| المجموعة: |
Digital.CSIC (Consejo Superior de Investigaciones Científicas / Spanish National Research Council) |
| الوصف: |
Document S1. Figures S1–S6 Table S1. Extracted features from 353 curated cysts (104 cysts at 4 days, 103 cysts at 7 days, 116 cysts at 10 days), related to Figure 2 Table S2. Hyperparameter search space for our proposed 3D ResU-Net, related to Figure 1 Table S3. Performance evaluation of our pipeline (CartoCell) on images of different epithelial tissues and comparison with other state-of-the-art segmentation methods, using the evaluation metrics described in STAR Methods, related to Figure 1 Table S4. Relative error between features extracted using automatically segmented cysts and manually curated cysts (STAR Methods), related to Figure 1 Table S5. Cyst morphology and scutoid location statistics, related to Figure 2 Table S6. Comparison of morphology and packing features of normoxic and hypoxic MDCK cysts, related to Figure 2 Table S7. Classification of the developmental stages of Drosophila egg chambers employed, related to Figure 3 Document S2. Article plus supplemental information ; Peer reviewed |
| نوع الوثيقة: |
dataset |
| وصف الملف: |
application/pdf; application/vnd.ms-excel |
| اللغة: |
English |
| العلاقة: |
Andrés-San Román, Jesús A.; Gordillo-Vázquez, Carmen; Franco-Barranco, Daniel; Morat, Laura; Fernández-Espartero, Cecilia H.; Baonza, Gabriel; Tagua, Antonio; Vicente-Munuera, Pablo; Palacios, Ana M.; Gavilán, María P.; Martín-Belmonte, Fernando; Annese, Valentina; Gómez-Gálvez, Pedro; Arganda-Carreras, Ignacio; Escudero, Luis M. CartoCell, a high-content pipeline for 3D image analysis, unveils cell morphology patterns in epithelia. http://dx.doi.org/10.1016/j.crmeth.2023.100597Test. http://hdl.handle.net/10261/339896Test; http://dx.doi.org/10.1016/j.crmeth.2023.100597Test; Sí; Andrés-San Román, Jesús A.; Gordillo-Vázquez, Carmen; Franco-Barranco, Daniel; Morat, Laura; Fernández-Espartero, Cecilia H.; Baonza, Gabriel; Tagua, Antonio; Vicente-Munuera, Pablo; Palacios, Ana M.; Gavilán, María P.; Martín-Belmonte, Fernando; Annese, Valentina; Gómez-Gálvez, Pedro; Arganda-Carreras, Ignacio; Escudero, Luis M.; 2023; Supplemental information CartoCell, a high-content pipeline for 3D image analysis, unveils cell morphology patterns in epithelia [Dataset]; Cell Press; http://dx.doi.org/10.1016/j.crmeth.2023.100597Test; http://hdl.handle.net/10261/339901Test |
| DOI: |
10.1016/j.crmeth.2023.100597 |
| الإتاحة: |
https://doi.org/10.1016/j.crmeth.2023.100597Test
http://hdl.handle.net/10261/339901Test |
| حقوق: |
open |
| رقم الانضمام: |
edsbas.1792F033 |
| قاعدة البيانات: |
BASE |
