تقرير
Morphological Control of Bundled Actin Networks Subject to Fixed-Mass Depletion
| العنوان: | Morphological Control of Bundled Actin Networks Subject to Fixed-Mass Depletion |
|---|---|
| المؤلفون: | Clarke, James, Melcher, Lauren, Crowell, Anne D., Cavanna, Francis, Houser, Justin R., Graham, Kristin, Green, Allison, Stachowiak, Jeanne C., Truskett, Thomas M., Milliron, Delia J., Rosales, Adrianne M., Das, Moumita, Alvarado, José |
| سنة النشر: | 2023 |
| المجموعة: | Condensed Matter Physics (Other) |
| مصطلحات موضوعية: | Condensed Matter - Soft Condensed Matter, Physics - Biological Physics |
| الوصف: | Depletion interactions are thought to significantly contribute to the organization of intracellular structures in the crowded cytosol. The strength of depletion interactions depends on physical parameters like the depletant number density and the depletant size ratio. Cells are known to dynamically regulate these two parameters by varying the copy number of proteins of a wide distribution of sizes. However, mammalian cells are also known to keep the total protein mass density remarkably constant, to within 0.5% throughout the cell cycle. We thus ask how the strength of depletion interactions varies when the total depletant mass is held fixed, a.k.a. fixed-mass depletion. We answer this question via scaling arguments, as well as by studying depletion effects on networks of reconstituted semiflexible actin $\textit{in silico}$ and $\textit{in vitro}$. We examine the maximum strength of the depletion interaction potential $U^*$ as a function of $q$, the size ratio between the depletant and the matter being depleted. We uncover a scaling relation $U^* \sim q^{-\zeta}$ for two cases: fixed volume fraction $\phi$ and fixed mass density $\rho$. For fixed volume fraction, we report $\zeta < 0$. For the fixed mass density case, we report $\zeta > 0$, which suggests the depletion interaction strength increases as the depletant size ratio is increased. To test this prediction, we prepared our filament networks at fixed mass concentrations with varying sizes of the depletant molecule poly(ethylene glycol) (PEG). We characterize the depletion interaction strength in our simulations via the mesh size. In experiments, we observe two distinct actin network morphologies, which we call weakly bundled and strongly bundled. We identify a mass concentration where different PEG depletant sizes leads to weakly bundled or strongly bundled morphologies...[more in main text]. Comment: 21 pages, 5 figures. arXiv admin note: substantial text overlap with arXiv:2205.01864 |
| نوع الوثيقة: | Working Paper |
| الوصول الحر: | http://arxiv.org/abs/2312.02989Test |
| رقم الانضمام: | edsarx.2312.02989 |
| قاعدة البيانات: | arXiv |
| الوصف غير متاح. |