The bracteatus pineapple genome and domestication of clonally propagated crops
| العنوان: | The bracteatus pineapple genome and domestication of clonally propagated crops |
|---|---|
| المؤلفون: | Michael C. Schatz, Michael Alonge, Juan Liu, Anupma Sharma, Geo Coppens D'Eeckenbrugge, Jeffrey L. Bennetzen, Xingtan Zhang, Lixian Huang, Ray Ming, Jingjing Yue, Jisen Zhang, Ming Li Wang, John C. Cushman, Srividya Ramakrishnan, Jae Young Choi, Teh Yang Hwa, Ching Man Wai, Shu-Min Kao, Hao Wang, Peter Boches, Qingsong Wu, Zhenyang Liao, Robert E. Paull, Christian Lexer, Chih-Wei Tung, Shuai Chen, Jianping Wang, Tracie K. Matsumoto, Hongye Zhou, Li Yu Chen, Margot Paris, Jian Song, Won Cheol Yim, Robert VanBuren, Garth M. Sanewski, Michael D. Purugganan, Mahpara Fatima, Yuan Qin, Hansong Yan, Shaoling Zhang, Lulu Wang, Jun Wu, Zhicong Lin, Qingyi Yu, Jishan Lin |
| المساهمون: | Fujian Agriculture and Forestry University (FAFU), University of Illinois at Urbana-Champaign [Urbana], University of Illinois System, Department of Horticulture, University of Wisconsin-Madison, Department of Biology, Northern Arizona University [Flagstaff], Department of Genetics, University of Georgia [USA], Johns Hopkins University (JHU), National Taiwan University, New York University [New York] (NYU), NYU System (NYU), Texas A&M University System, Department of agronomy, University of Florida [Gainesville] (UF), Department of Biochemistry and Molecular Biology, University of Nevada [Reno], University of Hawaii at Manoa, Partenaires INRAE, USDA-ARS : Agricultural Research Service, South Subtropical Crops Research Institute, CATAS, Nanjing Agricultural University, Hawaii Agriculture Research Center, Queensland Department of Agriculture and Fisheries, Department of Botany and Biodiversity Research, University of Vienna [Vienna], Department of Science and Technology of Fujian Province : 2016NZ0001-1, National Natural Science Foundation of China : U1605212, 31628013, 31701874, Fuzhou Science and Technology project : 2017-N-33, Distinguished Young Scholars Fund in Fujian Agriculture and Forestry University : xjq201609, National Science Foundation (NSF) : DBI-1401572, DBI1350041, United States Department of Health & Human Services, National Institutes of Health (NIH) - USA : R01-HG006677, NSF Plant Genome grants : 0607123, 043707-01, IOS-1546218, Zegar Family Foundatio : A16-0051-001, Swiss National Science Foundation (SNSF) : CRSII3_147630 |
| المصدر: | Nature Genetics Nature Genetics, Nature Publishing Group, 2019, 51 (10), pp.1549-1558. ⟨10.1038/s41588-019-0506-8⟩ Nature Genetics 10 (51), 1549-1558. (2019) |
| بيانات النشر: | HAL CCSD, 2019. |
| سنة النشر: | 2019 |
| مصطلحات موضوعية: | 0106 biological sciences, Crops, Agricultural, Population Dynamics, Sequence assembly, Genomics, Quantitative trait locus, Ananas, 01 natural sciences, Genetic recombination, Genome, F30 - Génétique et amélioration des plantes, Domestication, 03 medical and health sciences, Ressource génétique végétale, Quantitative Trait, Heritable, Gene Expression Regulation, Plant, Multiplication végétative, Genetics, [SDV.BV]Life Sciences [q-bio]/Vegetal Biology, Gene, 030304 developmental biology, Plant Proteins, 2. Zero hunger, 0303 health sciences, Vegetal Biology, Génome, biology, Domestication des plantes, biology.organism_classification, Plants, Genetically Modified, Bromelains, Phenotype, F02 - Multiplication végétative des plantes, Evolutionary biology, Ananas comosus, Sugars, Biologie végétale, Genome, Plant, 010606 plant biology & botany |
| الوصف: | Domestication of clonally propagated crops such as pineapple from South America was hypothesized to be a ‘one-step operation’. We sequenced the genome ofAnanas comosusvar.bracteatusCB5 and assembled 513 Mb into 25 chromosomes with 29,412 genes. Comparison of the genomes of CB5, F153 and MD2 elucidated the genomic basis of fiber production, color formation, sugar accumulation and fruit maturation. We also resequenced 89Ananasgenomes. Cultivars ‘Smooth Cayenne’ and ‘Queen’ exhibited ancient and recent admixture, while ‘Singapore Spanish’ supported a one-step operation of domestication. We identified 25 selective sweeps, including a strong sweep containing a pair of tandemly duplicated bromelain inhibitors. Four candidate genes for self-incompatibility were linked in F153, but were not functional in self-compatible CB5. Our findings support the coexistence of sexual recombination and a one-step operation in the domestication of clonally propagated crops. This work guides the exploration of sexual and asexual domestication trajectories in other clonally propagated crops. |
| وصف الملف: | text; application/pdf |
| اللغة: | English |
| تدمد: | 1061-4036 1546-1718 |
| الوصول الحر: | https://explore.openaire.eu/search/publication?articleId=doi_dedup___::cc1d72739e2bd7cb0464ea4d24737342Test https://hal.inrae.fr/hal-02625562Test |
| حقوق: | OPEN |
| رقم الانضمام: | edsair.doi.dedup.....cc1d72739e2bd7cb0464ea4d24737342 |
| قاعدة البيانات: | OpenAIRE |
| تدمد: | 10614036 15461718 |
|---|