Protein-Ribofuranosyl Interactions Activate Orotidine 5'-Monophosphate Decarboxylase for Catalysis

التفاصيل البيبلوغرافية
العنوان: Protein-Ribofuranosyl Interactions Activate Orotidine 5'-Monophosphate Decarboxylase for Catalysis
المؤلفون: Archie C. Reyes, Tiago A. S. Brandão, John P. Richard, Judith R. Cristobal
المصدر: Biochemistry
سنة النشر: 2021
مصطلحات موضوعية: Orotic acid, Conformational change, Phosphites, Decarboxylation, Stereochemistry, Ribose, Orotidine-5'-Phosphate Decarboxylase, Cell Communication, Biochemistry, Biophysical Phenomena, Catalysis, Article, chemistry.chemical_compound, Phagocytosis, Protein Domains, Orotidine, medicine, Hydroxides, Binding site, chemistry.chemical_classification, Orotic Acid, Binding Sites, Chemistry, Substrate (chemistry), Kinetics, Enzyme, Erythritol, Sugar Phosphates, Uridine Monophosphate, medicine.drug
الوصف: The role of a global, substrate-driven, enzyme conformational change in enabling the extraordinarily large rate acceleration for orotidine 5’-monophosphate decarboxylase (OMPDC)-catalyzed decarboxylation of orotidine 5’-monophosphate (OMP) is examined in experiments that focus on the interactions between OMPDC and the ribosyl hydroxyl groups of OMP. The D37 and T100’ side chains of OMPDC interact, respectively, with the C-3’ and C-2’ hydroxyl groups of enzyme-bound OMP. D37G and T100’A substitutions result in 1.4 kcal/mol increases in the activation barrier ΔG(‡) for catalysis of decarboxylation of the phosphodianion truncated substrate 1-(β-D-erythrofuranosyl)orotic acid (EO), but in larger 2.1–2.9 kcal/mole increases in ΔG(‡) for decarboxylation of OMP, and for phosphite dianion-activated decarboxylation of EO. This shows that these substitutions reduce transition state stabilization by the Q215, Y217 and R235 side chain at the dianion binding site. The D37G and T100’A substitutions result in
تدمد: 1520-4995
الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a3ccd85fcac5b1f3fc0dd2c6ea87f1c5Test
https://pubmed.ncbi.nlm.nih.gov/34726391Test
حقوق: OPEN
رقم الانضمام: edsair.doi.dedup.....a3ccd85fcac5b1f3fc0dd2c6ea87f1c5
قاعدة البيانات: OpenAIRE