Genome-wide identification, evolution analysis of LysM gene family members and their expression analysis in response to biotic and abiotic stresses in banana (Musa L.)

التفاصيل البيبلوغرافية
العنوان: Genome-wide identification, evolution analysis of LysM gene family members and their expression analysis in response to biotic and abiotic stresses in banana (Musa L.)
المؤلفون: Wenhui Ren, Chengyu Zhang, Mengge Wang, Chunyu Zhang, Xiaoqiong Xu, Yuji Huang, Yukun Chen, Yuling Lin, Zhongxiong Lai
المصدر: Gene. 845
سنة النشر: 2022
مصطلحات موضوعية: Plant Breeding, Gene Expression Regulation, Plant, Stress, Physiological, Gene Expression Profiling, Multigene Family, Genetics, Musa, General Medicine, Phylogeny, Plant Proteins
الوصف: LysM (Lysin motif), in response to pathogenic molecular stresses, is a crucial signal recognition gene. To understand the molecular characteristics of banana LysM gene family members, we used a series of bioinformatics methods. Based on the genomic databases of Musa acuminata, Musa balbisiana and Musa itinerans, a total of 53 genes and 55 proteins were identified, with 21 genes and 23 proteins in the M.acuminata, 16 genes and 16 proteins in each of M.balbisiana and M.itinerans, respectively. According to the conserved structural domains, LysM can be divided into five classes, namely LysMMltD, LYK, LYP, LysMn, and LysMe. The LysM gene was relatively highly conserved in the evolution of the three genomes of banana, and some differences occurred. Expression analysis revealed that MaLysM4-5 was relatively highly expressed under high-temperature stress, low-temperature stress and pathogen infection; at the same time, about one-third of the members were down-regulated under low-temperature stress and high-temperature stress, while the expression of MaLysM10-1 and MaLysM4-5 were up-regulated. After the banana wilt fungus FocTR4 infected the banana roots, MaLysM1 was down-regulated and MaLysM11-1 was up-regulated. In conclusion, our study suggests that MaLysMs may be necessary in the response to high- and low-temperature stresses, as well as the banana wilt fungus infestation. Overall, this paper found that LysM genes may be involved in biotic and abiotic stresses in banana, and provided helpful information about LysM's evolution, expression and properties, which will provide theoretical references for further studies on the functions of LysM genes and resistance breeding in the future.
تدمد: 1879-0038
الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::3ab4f3d9be124d4dfa54717635ae679aTest
https://pubmed.ncbi.nlm.nih.gov/36044944Test
حقوق: CLOSED
رقم الانضمام: edsair.doi.dedup.....3ab4f3d9be124d4dfa54717635ae679a
قاعدة البيانات: OpenAIRE