Molecular-based investigation and genetic characterization of porcine stool-associated RNA virus (posavirus) lineages 1 to 3 in pigs in South Korea from 2017 to 2019
| العنوان: | Molecular-based investigation and genetic characterization of porcine stool-associated RNA virus (posavirus) lineages 1 to 3 in pigs in South Korea from 2017 to 2019 |
|---|---|
| المؤلفون: | Thi-My-Le Huynh, Dinh-Chuong Vo, Yong Ho Park, Van Giap Nguyen, Hai-Quynh Do, Bong-Kyun Park, Hee-Chun Chung |
| المصدر: | Research in Veterinary Science. 128:286-292 |
| بيانات النشر: | Elsevier BV, 2020. |
| سنة النشر: | 2020 |
| مصطلحات موضوعية: | Genes, Viral, Swine, 040301 veterinary sciences, Genome, Viral, Picornaviridae, Genome, 0403 veterinary science, Feces, 03 medical and health sciences, chemistry.chemical_compound, Molecular evolution, RNA polymerase, Republic of Korea, Animals, Phylogeny, 030304 developmental biology, Swine Diseases, Genetics, 0303 health sciences, Genetic diversity, Picornaviridae Infections, General Veterinary, Phylogenetic tree, biology, RNA, RNA virus, 04 agricultural and veterinary sciences, RNA-Dependent RNA Polymerase, biology.organism_classification, chemistry, Picornavirales |
| الوصف: | Recent results on the detection and genetic characterization of stool-associated RNA viruses from different species have increased the knowledge about the extreme genetic diversity of picornaviruses. This study aimed to investigate the presence of unclassified porcine stool-associated RNA viruses (posaviruses) in South Korea and to elucidate the molecular evolution of the viruses. By RT-PCR, posaviruses 1 and 3 were exclusively found in fecal samples and consistently detected in three consecutive years in six of eight provinces, with 148/697 (21.2%) and 33/84 (39.3%) positive samples and farms, respectively. Every age group but the older age groups (finisher, sow) had significantly higher positive rates of posavirus 1 than posavirus 3. An analysis of the RNA-dependent RNA polymerase sequences by likelihood mapping and maximum-likelihood-based phylogenetic analysis revealed that stool-associated RNA viruses formed four supergroups that were well separated from all recognized families of the order Picornavirales. Five genomes of Korean posaviruses generated in this study were phylogenetically grouped with posavirus 1 and posavirus 3 and were predicted to have the typical genome organization of picornaviruses. |
| تدمد: | 0034-5288 |
| الوصول الحر: | https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5a703d714b84b3f916c5240461e07229Test https://doi.org/10.1016/j.rvsc.2019.11.007Test |
| حقوق: | CLOSED |
| رقم الانضمام: | edsair.doi.dedup.....5a703d714b84b3f916c5240461e07229 |
| قاعدة البيانات: | OpenAIRE |
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