المؤلفون: Hartasánchez Frenk, Diego Andrés

المساهمون: University/Department: Universitat Pompeu Fabra. Departament de Ciències Experimentals i de la Salut

مرشدي الرسالة: Navarro, Arcadi

المصدر: TDX (Tesis Doctorals en Xarxa)

مصطلحات موضوعية: Interlocus gene conversion, Segmental duplications, Forward simulator, Recombination, Sequence similarity, Conversió gènica interlocus, Duplicacions de segments, Simulador endavant en el temps, Recombinació, Similitud de sequències

وصف الملف: application/pdf

الوصول الحر: http://hdl.handle.net/10803/525842Test

المؤلفون: Cheng-Qing Hu, Tao Hou, Rui Xiang, Xin Li, Jing Li, Tian-Tian Wang, Wen-Jun Liu, Song Hou, Di Wang, Qing-He Zhao, Xiao-Xing Yu, Ming Xu, Xing-Kai Liu, Yu-Jing Chi, Ji-Chun Yang

المصدر: Military Medical Research, Vol 11, Iss 1, Pp 1-26 (2024)

مصطلحات موضوعية: Pannexin 1 (PANX1), Family with sequence similarity 3 member A (FAM3A), Adenosine triphosphate (ATP) release, Glucolipid metabolism, Medicine (General), R5-920, Military Science

وصف الملف: electronic resource

العلاقة: https://doaj.org/toc/2054-9369Test

الوصول الحر: https://doaj.org/article/f122ea0858ba4deab168681c1c964751Test

المؤلفون: Hongbo Zhao, Johanna Karppi, Owen Mototsune, Daria Poshina, Jenny Svartström, Thi Truc Minh Nguyen, Tri Minh Vo, Adrian Tsang, Emma Master, Maija Tenkanen

المصدر: Biotechnology for Biofuels and Bioproducts, Vol 17, Iss 1, Pp 1-22 (2024)

مصطلحات موضوعية: CAZy family AA3_2, Gentiobiose, Oxidoreductase, Phenoxy radical, Sequence similarity network, Biotechnology, TP248.13-248.65, Fuel, TP315-360

وصف الملف: electronic resource

العلاقة: https://doaj.org/toc/2731-3654Test

الوصول الحر: https://doaj.org/article/642799862ad24db89d9e656c9afb1c3dTest

المؤلفون: Shruti S. Patil, Steven A. Roberts, Assefaw H. Gebremedhin

المصدر: Frontiers in Bioinformatics, Vol 4 (2024)

مصطلحات موضوعية: network analysis, cancer genomics, driver genes, sequence similarity network, bipartite network, Computer applications to medicine. Medical informatics, R858-859.7

وصف الملف: electronic resource

العلاقة: https://www.frontiersin.org/articles/10.3389/fbinf.2024.1365200/fullTest; https://doaj.org/toc/2673-7647Test

الوصول الحر: https://doaj.org/article/f60a5687c15440969c56990d58ce9887Test

المؤلفون: Chen Jing, Wang Zixiang, Huang Jia

المصدر: Journal of Integrative Bioinformatics, Vol 20, Iss 4, Pp 155-71 (2023)

مصطلحات موضوعية: multiple network alignment, protein–protein interaction network, simulated annealing algorithm, network clustering, sequence similarity, Biotechnology, TP248.13-248.65

وصف الملف: electronic resource

العلاقة: https://doaj.org/toc/1613-4516Test

الوصول الحر: https://doaj.org/article/11aa6bcc828e444bb6d6039c7d05818fTest

المؤلفون: Isaac Filella-Merce, Vincent Mallet, Eric Durand, Michael Nilges, Guillaume Bouvier, Riccardo Pellarin

المصدر: Frontiers in Bioinformatics, Vol 4 (2024)

مصطلحات موضوعية: self-organizing maps (SOM), sequence similarity landscape, protein sequence analysis, protein sequence visualization, human kinome, human GPCRs, Computer applications to medicine. Medical informatics, R858-859.7

وصف الملف: electronic resource

العلاقة: https://www.frontiersin.org/articles/10.3389/fbinf.2024.1321508/fullTest; https://doaj.org/toc/2673-7647Test

الوصول الحر: https://doaj.org/article/0384b44ff500435caecb9c3e1a275366Test

المؤلفون: Sarah E. Champagne, Chang-Hwa Chiang, Philipp M. Gemmel, Charles L. Brooks, Alison R. H. Narayan

مصطلحات موضوعية: Biochemistry, Microbiology, Genetics, Biotechnology, Evolutionary Biology, Ecology, Immunology, Computational Biology, Astronomical and Space Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, valley fever fungus, sequence similarity network, complex product mixtures, arylindole substrates aided, ancestral sequence space, substituted indole substrates, deliver enantioenriched products, biocatalytic stereoselective oxidation, asymmetric biocatalytic oxidation, previously uncharacterized enzyme, natural products, hydroxyindolenine products, substituted 2, stereoselectively catalyze, selectivity possible, pharmaceutical compounds, excellent yields, enzymatic reactions, dependent monooxygenases

العلاقة: https://figshare.com/articles/journal_contribution/Biocatalytic_Stereoselective_Oxidation_of_2_Arylindoles/25024750Test

الإتاحة: https://doi.org/10.1021/jacs.3c12393.s001Test
https://figshare.com/articles/journal_contribution/Biocatalytic_Stereoselective_Oxidation_of_2_Arylindoles/25024750Test

المؤلفون: Zhao, Hongbo, Karppi, Johanna, Mototsune, Owen, Poshina, Daria, Svartström, Jenny Johanna, Nguyen , Thi Truc Minh, Vo, Tri Minh, Tsang, Adrian, Master, Emma R., Tenkanen, Maija

المساهمون: Department of Food and Nutrition, Carbohydrate Chemistry and Enzymology, Helsinki Institute of Sustainability Science (HELSUS)

مصطلحات موضوعية: 4112 Forestry, CAZy AA3, Gentiobiose, Oxidoreductase, Phenoxy radicals, sequence similarity network

وصف الملف: application/pdf

العلاقة: Zhao , H , Karppi , J , Mototsune , O , Poshina , D , Svartström , J J , Nguyen , T T M , Vo , T M , Tsang , A , Master , E R & Tenkanen , M 2024 , ' Substrate specificity mapping of fungal CAZy AA3_2 oxidoreductases ' , Biotechnology for biofuels and bioproducts , vol. 17 . https://doi.org/10.1186/s13068-024-02491-8Test; ORCID: /0000-0003-2883-2717/work/157596453; ORCID: /0000-0002-8959-214X/work/157598489; http://hdl.handle.net/10138/574279Test; 03297086-46bd-4e7b-97b7-45653814742a; 85188944583

الإتاحة: http://hdl.handle.net/10138/574279Test

المؤلفون: Filella Merce, Isaac, Mallet, Vincent, Durand, Enric, Nilges, Michael, Bouvier, Guillaume, Pellarin, Riccardo

المساهمون: Barcelona Supercomputing Center

مصطلحات موضوعية: Àrees temàtiques de la UPC::Informàtica::Aplicacions de la informàtica::Bioinformàtica, Protein sequencing, Phylogenetics, Self-organizing maps (SOM), Sequence similarity landscape, Protein sequence analysis, Protein sequence visualization, Human kinome, Human GPCRs, Type VI secretion system (T6SS), Supercomputadors

وصف الملف: application/pdf

العلاقة: https://www.frontiersin.org/articles/10.3389/fbinf.2024.1321508/full#supplementary-materialTest; https://www.frontiersin.org/articles/10.3389/fbinf.2024.1321508/fullTest; AlignScape is available as a Python library (https://github.com/bougui505/alignscapeTest). Users can utilize it locally as a Jupyter Notebook or within a Google Colaboratory Notebook (https://colab.research.google.com/github/bougui505/alignscape/blob/master/alignscape.ipynbTest), supporting both CPUs and GPUs. Within the notebook, we provide step-by-step instructions on how to install the necessary libraries, load the MSA, execute the SOM training, and generate several U-matrix representations. We also deployed an Apptainer (formerly known as Singularity) version of AlignScape (https://zenodo.org/records/10417520Test). We offer convenient downloads of all relevant files to ensure comprehensive access to the generated data. These include the resulting AlignScape object, the MST, the sequence to BMU to cluster assignment file, and images of all generated U-matrices.; Filella Merce, I. [et al.]. AlignScape, displaying sequence similarity using self-organizing maps. "Frontiers in Bioinformatics", 2024, vol. 4.; http://hdl.handle.net/2117/403939Test

الإتاحة: https://doi.org/10.3389/fbinf.2024.1321508Test
http://hdl.handle.net/2117/403939Test

المؤلفون: Vasiliki T. Chioti, Kenzie A. Clark, Jack G. Ganley, Esther J. Han, Mohammad R. Seyedsayamdost

مصطلحات موضوعية: Biochemistry, Microbiology, Genetics, Biotechnology, Evolutionary Biology, Infectious Diseases, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, unexplored biosynthetic landscape, translationally modified peptides, tailoring enzymes involved, multinuclear iron oxygenase, ripp recognition element, sequence similarity network, residue precursor peptide, ripp operons, vitro methods, vibrio <, transformation expands, three members, ribosomally synthesized, recently generated, reaction scope, penultimate asn, network revealed, mov <, like operon, involve cys, future exploration

العلاقة: https://figshare.com/articles/journal_contribution/N_C_Bond_Cleavage_Catalyzed_by_a_Multinuclear_Iron_Oxygenase_from_a_Divergent_Methanobactin-like_RiPP_Gene_Cluster/25365635Test

الإتاحة: https://doi.org/10.1021/jacs.3c11740.s001Test