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1دورية أكاديمية
المؤلفون: Dhanaprakash Jambulingam, Venkat Subramaniam Rathinakannan, Samuel Heron, Johanna Schleutker, Vidal Fey
مصطلحات موضوعية: Genetics, Molecular Biology, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, throughput sequencing technologies, standard sequencing methods, pipeline scripting language, kuura 8212, quality score recalibration, consensus call file, gatk haplotypecaller <, wgs data ”, div >< p, 2 ), generating, variant calling step, variant recalibration, variant consensus, variant calling, varscan <, strelka <, nextflow <, freebayes <, docker <, deepvariant <, whole exome, updating tools, time associated, source code, research gap
الإتاحة: https://doi.org/10.1371/journal.pone.0296785.s001Test
https://figshare.com/articles/journal_contribution/Detailed_installation_and_usage_instructions_/25023223Test -
2صورة
المؤلفون: Dhanaprakash Jambulingam, Venkat Subramaniam Rathinakannan, Samuel Heron, Johanna Schleutker, Vidal Fey
مصطلحات موضوعية: Genetics, Molecular Biology, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, throughput sequencing technologies, standard sequencing methods, pipeline scripting language, kuura 8212, quality score recalibration, consensus call file, gatk haplotypecaller <, wgs data ”, div >< p, 2 ), generating, variant calling step, variant recalibration, variant consensus, variant calling, varscan <, strelka <, nextflow <, freebayes <, docker <, deepvariant <, whole exome, updating tools, time associated, source code, research gap
الإتاحة: https://doi.org/10.1371/journal.pone.0296785.g001Test
https://figshare.com/articles/figure/Summary_of_the_steps_executed_by_the_Kuura_pipeline_/25023229Test -
3
المؤلفون: Dhanaprakash Jambulingam, Venkat Subramaniam Rathinakannan, Samuel Heron, Johanna Schleutker, Vidal Fey
مصطلحات موضوعية: Genetics, Molecular Biology, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, throughput sequencing technologies, standard sequencing methods, pipeline scripting language, kuura 8212, quality score recalibration, consensus call file, gatk haplotypecaller <, wgs data ”, div >< p, 2 ), generating, variant calling step, variant recalibration, variant consensus, variant calling, varscan <, strelka <, nextflow <, freebayes <, docker <, deepvariant <, whole exome, updating tools, time associated, source code, research gap
الإتاحة: https://doi.org/10.1371/journal.pone.0296785.s002Test
https://figshare.com/articles/dataset/Complete_validation_results_/25023226Test -
4
المؤلفون: Dhanaprakash Jambulingam, Venkat Subramaniam Rathinakannan, Samuel Heron, Johanna Schleutker, Vidal Fey
مصطلحات موضوعية: Genetics, Molecular Biology, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, throughput sequencing technologies, standard sequencing methods, pipeline scripting language, kuura 8212, quality score recalibration, consensus call file, gatk haplotypecaller <, wgs data ”, div >< p, 2 ), generating, variant calling step, variant recalibration, variant consensus, variant calling, varscan <, strelka <, nextflow <, freebayes <, docker <, deepvariant <, whole exome, updating tools, time associated, source code, research gap
الإتاحة: https://doi.org/10.1371/journal.pone.0296785.t001Test
https://figshare.com/articles/dataset/Information_on_the_gold_standard_datasets_used_for_validating_the_pipeline_/25023238Test -
5
المؤلفون: Dhanaprakash Jambulingam, Venkat Subramaniam Rathinakannan, Samuel Heron, Johanna Schleutker, Vidal Fey
مصطلحات موضوعية: Genetics, Molecular Biology, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, throughput sequencing technologies, standard sequencing methods, pipeline scripting language, kuura 8212, quality score recalibration, consensus call file, gatk haplotypecaller <, wgs data ”, div >< p, 2 ), generating, variant calling step, variant recalibration, variant consensus, variant calling, varscan <, strelka <, nextflow <, freebayes <, docker <, deepvariant <, whole exome, updating tools, time associated, source code, research gap
الإتاحة: https://doi.org/10.1371/journal.pone.0296785.t003Test
https://figshare.com/articles/dataset/Summary_of_the_tools_and_their_respective_i_docker_i_containers_used_in_each_stage_/25023244Test -
6صورة
المؤلفون: Dhanaprakash Jambulingam, Venkat Subramaniam Rathinakannan, Samuel Heron, Johanna Schleutker, Vidal Fey
مصطلحات موضوعية: Genetics, Molecular Biology, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, throughput sequencing technologies, standard sequencing methods, pipeline scripting language, kuura 8212, quality score recalibration, consensus call file, gatk haplotypecaller <, wgs data ”, div >< p, 2 ), generating, variant calling step, variant recalibration, variant consensus, variant calling, varscan <, strelka <, nextflow <, freebayes <, docker <, deepvariant <, whole exome, updating tools, time associated, source code, research gap
العلاقة: https://figshare.com/articles/figure/Overall_architecture_of_the_Kuura_pipeline_/25023232Test
الإتاحة: https://doi.org/10.1371/journal.pone.0296785.g002Test
https://figshare.com/articles/figure/Overall_architecture_of_the_Kuura_pipeline_/25023232Test -
7صورة
المؤلفون: Dhanaprakash Jambulingam, Venkat Subramaniam Rathinakannan, Samuel Heron, Johanna Schleutker, Vidal Fey
مصطلحات موضوعية: Genetics, Molecular Biology, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, throughput sequencing technologies, standard sequencing methods, pipeline scripting language, kuura 8212, quality score recalibration, consensus call file, gatk haplotypecaller <, wgs data ”, div >< p, 2 ), generating, variant calling step, variant recalibration, variant consensus, variant calling, varscan <, strelka <, nextflow <, freebayes <, docker <, deepvariant <, whole exome, updating tools, time associated, source code, research gap
الإتاحة: https://doi.org/10.1371/journal.pone.0296785.g003Test
https://figshare.com/articles/figure/Screenshot_showing_a_successfully_executed_pipeline_and_the_information_presented_while_the_pipeline_is_running_/25023235Test -
8
المؤلفون: Dhanaprakash Jambulingam, Venkat Subramaniam Rathinakannan, Samuel Heron, Johanna Schleutker, Vidal Fey
مصطلحات موضوعية: Genetics, Molecular Biology, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, throughput sequencing technologies, standard sequencing methods, pipeline scripting language, kuura 8212, quality score recalibration, consensus call file, gatk haplotypecaller <, wgs data ”, div >< p, 2 ), generating, variant calling step, variant recalibration, variant consensus, variant calling, varscan <, strelka <, nextflow <, freebayes <, docker <, deepvariant <, whole exome, updating tools, time associated, source code, research gap
العلاقة: https://figshare.com/articles/dataset/Validation_results_using_each_variant_caller_/25023241Test
الإتاحة: https://doi.org/10.1371/journal.pone.0296785.t002Test
https://figshare.com/articles/dataset/Validation_results_using_each_variant_caller_/25023241Test