The fast Fourier transform FFT processor is an important part of the space real-time signal processing system based on field programmable gate array (FPGA). Since occupying a large amount of logical resources and storage resources, FFT processor is more vulnerable to high-energy particles in space, resulting in single event upset (SEU). This paper presents a novel FPGA scrubbing framework base on dynamic partial reconfiguration technique for a FFT processor to mitigate SEU. The proposed scheme is compared with the blind scrubbing, the reconfiguration time is reduced by 78%. Then, the resource utilisation is 61.5% less than triple modular redundancy scheme. This paper also presents a DPR controller for FFT processor, which is evaluated in terms of hardware resources and reconfiguration time. A comparison to the Xilinx PRC IP shows that multipath delay feedback FFT controller saves 38.6% resources.
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