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1دورية أكاديمية
المؤلفون: Yu, Alvin, Lee, Elizabeth MY, Briggs, John AG, Ganser-Pornillos, Barbie K, Pornillos, Owen, Voth, Gregory A
المصدر: Proceedings of the National Academy of Sciences of the United States of America. 119(10)
مصطلحات موضوعية: Infectious Diseases, HIV/AIDS, Aetiology, 2.2 Factors relating to the physical environment, Infection, Capsid, Capsid Proteins, Cell Line, Electron Microscope Tomography, HIV-1, Humans, Molecular Dynamics Simulation, Protein Conformation, Virus Uncoating, HIV capsid, all-atom molecular dynamics,  , uncoating, strain
وصف الملف: application/pdf
الوصول الحر: https://escholarship.org/uc/item/3h82r05sTest
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2دورية أكاديمية
المؤلفون: Pusara, Srdjan
المصدر: International Journal of Molecular Sciences, 25 (9), Art.-Nr.: 4660 ; ISSN: 1661-6596, 1422-0067
مصطلحات موضوعية: β-lactoglobulin, β-lactoglobulin peptides, peptide aggregation, amyloid aggregation, early-stage amyloid aggregation, molecular dynamics, all-atom molecular dynamics, ddc:600, Technology, info:eu-repo/classification/ddc/600
وصف الملف: application/pdf
العلاقة: info:eu-repo/semantics/altIdentifier/wos/001219956300001; info:eu-repo/semantics/altIdentifier/issn/1661-6596; info:eu-repo/semantics/altIdentifier/issn/1422-0067; https://publikationen.bibliothek.kit.edu/1000171068Test; https://publikationen.bibliothek.kit.edu/1000171068/152960607Test; https://doi.org/10.5445/IR/1000171068Test
الإتاحة: https://doi.org/10.5445/IR/100017106810.3390/ijms25094660Test
https://publikationen.bibliothek.kit.edu/1000171068Test
https://publikationen.bibliothek.kit.edu/1000171068/152960607Test -
3دورية أكاديمية
المؤلفون: Ilona C. Unarta, Siqin Cao, Eshani C. Goonetilleke, Jiani Niu, Samuel H. Gellman, Xuhui Huang
مصطلحات موضوعية: Biophysics, Biochemistry, Cell Biology, Genetics, Molecular Biology, Biotechnology, Cancer, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, performed accumulated 564, despite recent advances, within living cells, scaffold rna oligomer, scaffold rna compared, six arg residues, regulating peptide diffusion, model condensates formed, atom molecular dynamics, asymmetric dimethyl arginine, rich peptide diffused, two guest peptides, scaffold peptide rich, scaffold rna, scaffold peptide, guest peptide, rich peptide, rna backbone, molecules within, driven diffusion, rich peptides
الإتاحة: https://doi.org/10.1021/acs.jpcb.3c08126.s001Test
https://figshare.com/articles/journal_contribution/Submillisecond_Atomistic_Molecular_Dynamics_Simulations_Reveal_Hydrogen_Bond-Driven_Diffusion_of_a_Guest_Peptide_in_Protein_RNA_Condensate/25308147Test -
4دورية أكاديمية
المؤلفون: Chikaodinaka I. Eneh, Kevin Nixon, Suvesh Manoj Lalwani, Maria Sammalkorpi, Piotr Batys, Jodie L. Lutkenhaus
مصطلحات موضوعية: Biophysics, Neuroscience, Cancer, Science Policy, Virology, Chemical Sciences not elsewhere classified, Physical Sciences not elsewhere classified, oppositely charged polyelectrolytes, atom molecular dynamics, diallylmethylammonium )/ poly, diallyldimethylammonium )/ poly, paa hydrogen bonding, hydrogen bonding, yield lower, taken together, study highlights, solution state, simulations support, separations applications, secondary interactions, responsive materials, preparatory factors, phase transitioned, phase behavior, original phase, often overlooked, numerous environmental, mixture ’, mixing ratios, membraneless organelles
الإتاحة: https://doi.org/10.1021/acs.macromol.4c00258.s001Test
https://figshare.com/articles/journal_contribution/Solid_Liquid_Solution_Phases_in_Poly_diallyldimethylammonium_Poly_acrylic_acid_Polyelectrolyte_Complexes_at_Varying_Temperatures/25267372Test -
5دورية أكاديمية
مصطلحات موضوعية: Biophysics, Medicine, Biotechnology, Cancer, Computational Biology, Space Science, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, Physical Sciences not elsewhere classified, Information Systems not elsewhere classified, two billion atoms, overcomes previous limitations, model systems demonstrate, atom molecular dynamics, implementation produces results, amber force fields, force fields, atom systems, amber family, parameter sets, native engine, increasing application, including viruses, enable high, cellular machinery, case studies
الإتاحة: https://doi.org/10.1021/acs.jcim.3c01648.s001Test
https://figshare.com/articles/journal_contribution/AMBERff_at_Scale_Multimillion-Atom_Simulations_with_AMBER_Force_Fields_in_NAMD/24945130Test -
6دورية أكاديمية
المؤلفون: Suman Saurabh, Qinkun Zhang, Zongyi Li, John M. Seddon, Cavan Kalonia, Jian R. Lu, Fernando Bresme
مصطلحات موضوعية: Biophysics, Biochemistry, Medicine, Biotechnology, Immunology, Cancer, Inorganic Chemistry, Hematology, Chemical Sciences not elsewhere classified, Physical Sciences not elsewhere classified, small local changes, atom molecular dynamics, protein structure play, important therapeutic proteins, mediate antibody aggregation, controlling mab adsorption, protein regions, therapeutic formulations, therapeutic efficacy, vapor interface, type antibody, surface adsorption, surface activity, promoting adsorption, potentially contributing, outline strategies, microscopic processes, mechanistic insights, interfaces requires, full igg1
الإتاحة: https://doi.org/10.1021/acs.molpharmaceut.3c00821.s001Test
https://figshare.com/articles/journal_contribution/Mechanistic_Insights_into_the_Adsorption_of_Monoclonal_Antibodies_at_the_Water_Vapor_Interface/24970245Test -
7دورية أكاديمية
المؤلفون: Hana Dohnalová, Mona Seifert, Eva Matoušková, Misha Klein, Flávia S. Papini, Jan Lipfert, David Dulin, Filip Lankaš
مصطلحات موضوعية: Biophysics, Biochemistry, Medicine, Cell Biology, Molecular Biology, Developmental Biology, Cancer, Virology, Computational Biology, Biological Sciences not elsewhere classified, Physical Sciences not elsewhere classified, still poorly understood, magnetic tweezer experiments, develop new parametrizations, atom molecular dynamics, 4 ± 0, 0 ± 1, complex rna assemblies, rna experimental data, wrna sub, wdna sub, stranded rna probed, rna double helix, twist temperature decrease, dependent dsrna structure, stranded rna, dependent twist, >< sub, rna simulations, rna duplex
الإتاحة: https://doi.org/10.1021/acs.jpcb.3c06280.s001Test
https://figshare.com/articles/journal_contribution/Temperature-Dependent_Twist_of_Double-Stranded_RNA_Probed_by_Magnetic_Tweezer_Experiments_and_Molecular_Dynamics_Simulations/24973329Test -
8دورية أكاديمية
المؤلفون: Ruiyu Wang, Shams Mehdi, Ziyue Zou, Pratyush Tiwary
مصطلحات موضوعية: Biophysics, Medicine, Molecular Biology, Computational Biology, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, Physical Sciences not elsewhere classified, local ion density, length scales involved, generic small molecules, extremely difficult due, could offer insights, atom molecular dynamics, step nucleation mechanism, simulate nacl nucleation, even though nucleation, drive nacl nucleation, drive nucleation, nucleation mechanisms, investigating nucleation, drives nucleation, transition states, results reveal, reaction coordinates, reaction coordinate, protocol proposed, phase sampling, liquid states, function thereof, engineering problems
الإتاحة: https://doi.org/10.1021/acs.jpcb.3c06735.s001Test
https://figshare.com/articles/journal_contribution/Is_the_Local_Ion_Density_Sufficient_to_Drive_NaCl_Nucleation_from_the_Melt_and_Aqueous_Solution_/25050792Test -
9دورية أكاديمية
المؤلفون: Manuel Palma Banos, Alexander V. Popov, Rigoberto Hernandez
مصطلحات موضوعية: Biophysics, Cell Biology, Genetics, Molecular Biology, Physiology, Biotechnology, Ecology, Sociology, Infectious Diseases, Computational Biology, Environmental Sciences not elsewhere classified, Physical Sciences not elsewhere classified, g ., atoms, simple exchange mechanism, atom molecular dynamics, retain dynamical consistency, grained particles periodically, characteristic exchange time, dynamical consistency, characteristic time, grained particles, grained dynamics, exchange term, exchange involves, grained scales, grained particle, grained models, work confirms, subsequent reassignment
الإتاحة: https://doi.org/10.1021/acs.jpcb.3c08054.s001Test
https://figshare.com/articles/journal_contribution/Representability_and_Dynamical_Consistency_in_Coarse-Grained_Models/25148235Test -
10دورية أكاديمية
مصطلحات موضوعية: Medicine, Biotechnology, Sociology, Virology, Computational Biology, Space Science, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, e ., makes, motivated modified definition, atom molecular dynamics, unsupervised machine learning, highly charged (<, 3 + sup, several clusters representing, interacting water molecules, polymer steric effect, paa brushes imparting, paa brush layer, brushes modeled using, water molecules inside, atom md simulations, machine learning, brush layer, clusters representing, water molecules, steric effect, paa brushes, generic definition
الإتاحة: https://doi.org/10.1021/acs.macromol.3c02127.s001Test
https://figshare.com/articles/journal_contribution/Hydrogen_Bonding_Inside_Anionic_Polymeric_Brush_Layer_Machine_Learning-Driven_Exploration_of_the_Relative_Roles_of_the_Polymer_Steric_Effect_Charging_and_Type_of_Screening_Counterions/25201344Test