المؤلفون: Benaglio, Paola, Zhu, Han, Okino, Mei-Lin, Yan, Jian, Elgamal, Ruth, Nariai, Naoki, Beebe, Elisha, Korgaonkar, Katha, Qiu, Yunjiang, Donovan, Margaret KR, Chiou, Joshua, Wang, Gaowei, Newsome, Jacklyn, Kaur, Jaspreet, Miller, Michael, Preissl, Sebastian, Corban, Sierra, Aylward, Anthony, Taipale, Jussi, Ren, Bing, Frazer, Kelly A, Sander, Maike, Gaulton, Kyle J

المصدر: Cell Genomics. 2(12)

مصطلحات موضوعية: Biochemistry and Cell Biology, Genetics, Biological Sciences, Diabetes, Autoimmune Disease, Prevention, Human Genome, Pediatric, 2.1 Biological and endogenous factors, Aetiology, Metabolic and endocrine, 3D chromatin interactions, CRISPR screen, accessible chromatin, beta cell, functional genomics, gene expression, high-throughput reporter assay, human genetics, proinflammatory cytokines, type 1 diabetes

وصف الملف: application/pdf

الوصول الحر: https://escholarship.org/uc/item/8wv9b80nTest

المؤلفون: Betelehem Solomon Bera, Taylor V. Thompson, Eric Sosa, Hiroko Nomaru, David Reynolds, Robert A. Dubin, Shahina B. Maqbool, Deyou Zheng, Bernice E. Morrow, John M. Greally, Masako Suzuki

المصدر: Epigenetics & Chromatin, Vol 16, Iss 1, Pp 1-13 (2023)

مصطلحات موضوعية: Single-cell, Open-chromatin regions, Multiplexing, Assay for transposase-accessible chromatin (ATAC), Genetics, QH426-470

وصف الملف: electronic resource

العلاقة: https://doaj.org/toc/1756-8935Test

الوصول الحر: https://doaj.org/article/f1b57dbd9eda4373b99c5082f8dfd9c5Test

المؤلفون: Parvathaneni, Rajiv K, Bertolini, Edoardo, Shamimuzzaman, Md, Vera, Daniel L, Lung, Pei-Yau, Rice, Brian R, Zhang, Jinfeng, Brown, Patrick J, Lipka, Alexander E, Bass, Hank W, Eveland, Andrea L

المصدر: Genome Biology. 21(1)

مصطلحات موضوعية: Agricultural, Veterinary and Food Sciences, Biological Sciences, Bioinformatics and Computational Biology, Horticultural Production, Human Genome, Genetics, Generic health relevance, Chromatin Assembly and Disassembly, Gene Expression Regulation, Developmental, Gene Expression Regulation, Plant, Genome, Plant, Genome-Wide Association Study, Inflorescence, Micrococcal Nuclease, Promoter Regions, Genetic, RNA, Long Noncoding, Zea mays, Maize inflorescence, Meristem, Accessible chromatin, Gene regulation, lncRNAs, Environmental Sciences, Information and Computing Sciences, Bioinformatics

وصف الملف: application/pdf

الوصول الحر: https://escholarship.org/uc/item/29q4q67qTest

المؤلفون: Ruonan Li, Jiangyi Liu, Ping Yi, Xianli Yang, Jun Chen, Chenyang Zhao, Xingyun Liao, Xiaotang Wang, Zongren Xu, Huiping Lu, Hongshun Li, Zhi Zhang, Xianyang Liu, Junjie Xiang, Ke Hu, Hongbo Qi, Jia Yu, Peizeng Yang, Shengping Hou

المصدر: Advanced Science, Vol 10, Iss 16, Pp n/a-n/a (2023)

مصطلحات موضوعية: fetal eye, gliogenesis, neurogenesis, retinal development, single‐cell assay for transposase‐accessible chromatin sequencing, single‐cell RNA sequencing, Science

وصف الملف: electronic resource

العلاقة: https://doaj.org/toc/2198-3844Test

الوصول الحر: https://doaj.org/article/0fea79c6beef4fe595dd614cfcdbf338Test

المؤلفون: Salma, Mohammad, Andrieu-Soler, Charlotte, Deleuze, Virginie, Soler, Eric

المساهمون: Institut de Génétique Moléculaire de Montpellier (IGMM), Centre National de la Recherche Scientifique (CNRS)-Université de Montpellier (UM), Laboratoire d'Excellence : Biogenèse et pathologies du globule rouge (Labex Gr-Ex), Université Sorbonne Paris Cité (USPC)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Université Paris Cité (UPCité), ANR-11-IDEX-0005,USPC,Université Sorbonne Paris Cité(2011), ANR-11-LABX-0051,GR-Ex,Biogenèse et pathologies du globule rouge(2011)

المصدر: ISSN: 1079-9796.

مصطلحات موضوعية: Transcription factors, chromatin, epigenetics, ChIP-Sequencing, CUT&RUN, spatial epigenomics Abbreviations ATAC, Assay of Transposase Accessible Chromatin ChIP, Chromatin ImmunoPrecipitation CUT&RUN, Cleavage Under Target and Release Using Nuclease CUT&Tag, Cleavage Under Targets and Tagmentation DHS, DNAse I hypersensitivity MERFISH, Multiplexed Error Robust Fluorescence In Situ Hybridization, MNase, Micrococcal Nuclease Ser5P-RNAPII, Serine 5 phosphorylated RNA polymerase II TF, Transcription Factor, Assay of Transposase Accessible Chromatin, ChIP, Chromatin ImmunoPrecipitation, Cleavage Under Target and Release Using Nuclease, CUT&Tag, Cleavage Under Targets and Tagmentation, DHS, DNAse I hypersensitivity, MERFISH, Micrococcal Nuclease, Ser5P-RNAPII, Serine 5 phosphorylated RNA polymerase II, TF, [SDV]Life Sciences [q-bio]

العلاقة: hal-04240244; https://hal.science/hal-04240244Test; https://hal.science/hal-04240244/documentTest; https://hal.science/hal-04240244/file/2023_BCMD-D-23-00020_R1.pdfTest

الإتاحة: https://doi.org/10.1016/j.bcmd.2023.102745Test
https://hal.science/hal-04240244Test
https://hal.science/hal-04240244/documentTest
https://hal.science/hal-04240244/file/2023_BCMD-D-23-00020_R1.pdfTest

المؤلفون: Stewart-Morgan, Kathleen R., Groth, Anja

المساهمون: Marinov, Georgi K., Greenleaf, William J.

المصدر: Stewart-Morgan , K R & Groth , A 2023 , Profiling Chromatin Accessibility on Replicated DNA with repli-ATAC-Seq . in G K Marinov & W J Greenleaf (eds) , Chromatin Accessibility : Methods and Protocols . Humana Press , Methods in Molecular Biology , vol. 2611 , pp. 71-84 . https://doi.org/10.1007/978-1-0716-2899-7_6Test

مصطلحات موضوعية: Accessible chromatin, Chromatin assembly, DNA replication, Nucleosome-free regions, repli-ATAC-seq, Transcription

وصف الملف: application/pdf

الإتاحة: https://doi.org/10.1007/978-1-0716-2899-7_6Test
https://curis.ku.dk/portal/da/publications/profilingTest-chromatin-accessibility-on-replicated-dna-with-repliatacseq(6389a657-b111-4d4c-9c61-34d564e98b83).html
https://curis.ku.dk/ws/files/380697730/978_1_0716_2899_7_6.pdfTest

المؤلفون: Benaglio, Paola, Zhu, Han, Okino, Mei Lin, Yan, Jian, Elgamal, Ruth, Nariai, Naoki, Beebe, Elisha, Korgaonkar, Katha, Qiu, Yunjiang, Donovan, Margaret K.R., Chiou, Joshua, Wang, Gaowei, Newsome, Jacklyn, Kaur, Jaspreet, Miller, Michael, Preissl, Sebastian, Corban, Sierra, Aylward, Anthony, Taipale, Jussi, Ren, Bing, Frazer, Kelly A., Sander, Maike, Gaulton, Kyle J.

المساهمون: Department of Pathology, Biosciences, Doctoral Programme in Integrative Life Science, Jussi Taipale / Principal Investigator

مصطلحات موضوعية: 3D chromatin interactions, accessible chromatin, beta cell, CRISPR screen, functional genomics, gene expression, high-throughput reporter assay, human genetics, proinflammatory cytokines, type 1 diabetes, General medicine, internal medicine and other clinical medicine, Biomedicine

وصف الملف: application/pdf

العلاقة: The work performed in this study was supported by NIH grants DK122607 and DK120429 to K.J.G. and M.S.; DK112155 to M.S., K.F., K.J.G., and B.R.; and DK105541 to M.S., K.F., and B.R. The work performed in this study was supported by NIH grants DK122607 and DK120429 to K.J.G. and M.S.; DK112155 to M.S. K.F. K.J.G. and B.R.; and DK105541 to M.S. K.F. and B.R. K.J.G. and M.S. conceived of and supervised the study. K.J.G. P.B. H.Z. M.O. and M.S. wrote the manuscript. J.T. and B.R. supervised the design and generation of SNP-SELEX data. K.F. supervised the design of SNP-SELEX and analyses of genomic data. S.P. supervised generation of single-cell data. P.B. performed statistical data analysis of genomic, CRISPR-KO screen, and genetic data; H.Z. performed the CRISPR-KO screen and interpreted the results; M.O. and M.M. performed genomic assays. J.Y. performed the SNP-SELEX assay. P.B. M.O. R.E. E.B. K.K. A.A. J.C. G.W. and J.N. performed bulk and single-cell data analysis. M.O. R.E. J.K. and S.C. performed functional validation experiments. P.B. N.N. Y.Q. A.A. and M.K.D. performed design and analysis of SNP-SELEX data. All authors contributed to and approved of the final version of the manuscript. K.J.G. is a consultant of Genentech and holds stock in Neurocrine Biosciences. B.R. is a consultant of Arima Genomics and a co-founder of Epigenome Technologies. P.B. is an employee of Shoreline Bioscience. N.N. is an employee of Guardant Health. E.B. is an employee and shareholder of Aetion. K.K. is an employee of Cartography Bio. Y.Q. is an employee of Sana Biotechnology. M.D. is an employee and shareholder of Seer. J.C. is an employee and shareholder of Pfizer.; Benaglio , P , Zhu , H , Okino , M L , Yan , J , Elgamal , R , Nariai , N , Beebe , E , Korgaonkar , K , Qiu , Y , Donovan , M K R , Chiou , J , Wang , G , Newsome , J , Kaur , J , Miller , M , Preissl , S , Corban , S , Aylward , A , Taipale , J , Ren , B , Frazer , K A , Sander , M & Gaulton , K J 2022 , ' Type 1 diabetes risk genes mediate pancreatic beta cell survival in response to proinflammatory cytokines ' , Cell genomics , vol. 2 , no. 12 , 100214 . https://doi.org/10.1016/j.xgen.2022.100214Test; http://hdl.handle.net/10138/354977Test; c6a62712-0c8b-4078-9442-a6813e9052b5; 85143868567

الإتاحة: http://hdl.handle.net/10138/354977Test

المؤلفون: Chao Zhou, Xiaoyun Liu, Xinglei Li, Hanlin Zhou, Sijia Wang, Zhu Yuan, Yonghong Zhang, Sanhe Li, Aiqing You, Lei Zhou, Zhengquan He

المصدر: Rice, Vol 14, Iss 1, Pp 1-19 (2021)

مصطلحات موضوعية: Rice, Autopolyploid, Accessible chromatin regions, Transcriptional regulation, Epigenetic marks, Plant culture, SB1-1110

وصف الملف: electronic resource

العلاقة: https://doaj.org/toc/1939-8425Test; https://doaj.org/toc/1939-8433Test

الوصول الحر: https://doaj.org/article/13c1f6e3f1414bc6b6615ab7da6cb609Test

المؤلفون: Hongwei Wu, Jingjing Dong, Haiyan Yu, Kang Wang, Weier Dai, Xinzhou Zhang, Nan Hu, Lianghong Yin, Donge Tang, Fanna Liu, Yong Dai

المصدر: Frontiers in Immunology, Vol 13 (2022)

مصطلحات موضوعية: maintenance hemodialysis, single-cell RNA sequencing, single-cell assaying transposase accessible chromatin sequencing, T cell receptor, antigen presentation, immune pathways, Immunologic diseases. Allergy, RC581-607

وصف الملف: electronic resource

العلاقة: https://www.frontiersin.org/articles/10.3389/fimmu.2022.878226/fullTest; https://doaj.org/toc/1664-3224Test

الوصول الحر: https://doaj.org/article/0502ce660e79439682fe1ff7337acba0Test

المؤلفون: Hao Ming, Jiangwen Sun, Rolando Pasquariello, Lauren Gatenby, Jason R Herrick, Ye Yuan, Carlos R Pinto, Kenneth R Bondioli, Rebecca L Krisher, Zongliang Jiang

المصدر: Epigenetics, Vol 16, Iss 3, Pp 300-312 (2021)

مصطلحات موضوعية: accessible chromatin, atac-seq, oocytes, embryos, bovine, Genetics, QH426-470

وصف الملف: electronic resource

العلاقة: https://doaj.org/toc/1559-2294Test; https://doaj.org/toc/1559-2308Test

الوصول الحر: https://doaj.org/article/a2d65c2e14ac4293bb22320ab2aa6e16Test