المؤلفون: Tilgner, Hagen

المساهمون: University/Department: Universitat Pompeu Fabra. Departament de Ciències Experimentals i de la Salut

مرشدي الرسالة: Guigó Serra, Roderic

المصدر: TDX (Tesis Doctorals en Xarxa)

مصطلحات موضوعية: splicing, splicing simulation, ESS, ESE, chromatin, nucleosome, bioinformatics, co-­‐transcriptional splicing, empalmament, simulació de l´ empalmament, cromatina, nucleosoma, bioinformàtica, splicing co-­‐transcripcional

وصف الملف: application/pdf

الوصول الحر: http://hdl.handle.net/10803/85056Test

المؤلفون: Hawrylycz, Michael, Martone, Maryann E, Ascoli, Giorgio A, Bjaalie, Jan G, Dong, Hong-Wei, Ghosh, Satrajit S, Gillis, Jesse, Hertzano, Ronna, Haynor, David R, Hof, Patrick R, Kim, Yongsoo, Lein, Ed, Liu, Yufeng, Miller, Jeremy A, Mitra, Partha P, Mukamel, Eran, Ng, Lydia, Osumi-Sutherland, David, Peng, Hanchuan, Ray, Patrick L, Sanchez, Raymond, Regev, Aviv, Ropelewski, Alex, Scheuermann, Richard H, Tan, Shawn Zheng Kai, Thompson, Carol L, Tickle, Timothy, Tilgner, Hagen, Varghese, Merina, Wester, Brock, White, Owen, Zeng, Hongkui, Aevermann, Brian, Allemang, David, Ament, Seth, Athey, Thomas L, Baker, Cody, Baker, Katherine S, Baker, Pamela M, Bandrowski, Anita, Banerjee, Samik, Bishwakarma, Prajal, Carr, Ambrose, Chen, Min, Choudhury, Roni, Cool, Jonah, Creasy, Heather, D’Orazi, Florence, Degatano, Kylee, Dichter, Benjamin, Ding, Song-Lin, Dolbeare, Tim, Ecker, Joseph R, Fang, Rongxin, Fillion-Robin, Jean-Christophe, Fliss, Timothy P, Gee, James, Gillespie, Tom, Gouwens, Nathan, Zhang, Guo-Qiang, Halchenko, Yaroslav O, Harris, Nomi L, Herb, Brian R, Hintiryan, Houri, Hood, Gregory, Horvath, Sam, Huo, Bingxing, Jarecka, Dorota, Jiang, Shengdian, Khajouei, Farzaneh, Kiernan, Elizabeth A, Kir, Huseyin, Kruse, Lauren, Lee, Changkyu, Lelieveldt, Boudewijn, Li, Yang, Liu, Hanqing, Liu, Lijuan, Markuhar, Anup, Mathews, James, Mathews, Kaylee L, Mezias, Chris, Miller, Michael I, Mollenkopf, Tyler, Mufti, Shoaib, Mungall, Christopher J, Orvis, Joshua, Puchades, Maja A, Qu, Lei, Receveur, Joseph P, Ren, Bing, Sjoquist, Nathan, Staats, Brian, Tward, Daniel, van Velthoven, Cindy TJ, Wang, Quanxin, Xie, Fangming, Xu, Hua, Yao, Zizhen, Yun, Zhixi

المصدر: PLOS Biology. 21(6)

مصطلحات موضوعية: Biological Sciences, Genetics, Neurosciences, Brain Disorders, 1.1 Normal biological development and functioning, Underpinning research, Neurological, Animals, Humans, Mice, Brain, Ecosystem, Neurons, Agricultural and Veterinary Sciences, Medical and Health Sciences, Developmental Biology, Agricultural, veterinary and food sciences, Biological sciences, Biomedical and clinical sciences

وصف الملف: application/pdf

الوصول الحر: https://escholarship.org/uc/item/5b4209gsTest

المؤلفون: Pardo-Palacios, Francisco J., Wang, Dingjie, Reese, Fairlie, Diekhans, Mark, Carbonell-Sala, Sílvia, Williams, Brian, Loveland, Jane E., De María, Maite, Adams, Matthew S., Balderrama-Gutierrez, Gabriela, Behera, Amit K., Gonzalez Martinez, Jose M., Hunt, Toby, Lagarde, Julien, Liang, Cindy E., Li, Haoran, Meade, Marcus Jerryd, Moraga Amador, David A., Prjibelski, Andrey D., Birol, Inanc, Bostan, Hamed, Brooks, Ashley M., Çelik, Muhammed Hasan, Chen, Ying, Du, Mei R. M., Felton, Colette, Göke, Jonathan, Hafezqorani, Saber, Herwig, Ralf, Kawaji, Hideya, Lee, Joseph, Li, Jian-Liang, Lienhard, Matthias, Mikheenko, Alla, Mulligan, Dennis, Nip, Ka Ming, Pertea, Mihaela, Ritchie, Matthew E., Sim, Andre D., Tang, Alison D., Wan, Yuk Kei, Wang, Changqing, Wong, Brandon Y., Yang, Chen, Barnes, If, Berry, Andrew E., Capella-Gutierrez, Salvador, Cousineau, Alyssa, Dhillon, Namrita, Fernandez-Gonzalez, Jose M., Ferrández-Peral, Luis, Garcia-Reyero, Natà lia, Götz, Stefan, Hernández-Ferrer, Carles, Kondratova, Liudmyla, Liu, Tianyuan, Martinez-Martin, Alessandra, Menor, Carlos, Mestre-Tomás, Jorge, Mudge, Jonathan M., Panayotova, Nedka G., Paniagua, Alejandro, Repchevsky, Dmitry, Ren, Xingjie, Rouchka, Eric, Saint-John, Brandon, Sapena, Enrique, Sheynkman, Leon, Smith, Melissa Laird, Suner, Marie-Marthe, Takahashi, Hazuki, Youngworth, Ingrid A., Carninci, Piero, Denslow, Nancy D., Guigó, Roderic, Hunter, Margaret E., Maehr, Rene, Shen, Yin, Tilgner, Hagen U., Wold, Barbara J., Vollmers, Christopher, Frankish, Adam, Au, Kin Fai, Sheynkman, Gloria M., Mortazavi, Ali, Conesa, Ana, Brooks, Angela N.

المصدر: Nature Methods, (2024-06-07)

العلاقة: https://doi.org/10.1038/s41592-024-02298-3Test; oai:authors.library.caltech.edu:ysnkh-rdz03

الإتاحة: https://doi.org/10.1038/s41592-024-02298-3Test

المؤلفون: Meleshko, Dmitry, Prjbelski, Andrey D., Raiko, Mikhail, Tomescu, Alexandru I., Tilgner, Hagen, Hajirasouliha, Iman

المساهمون: Department of Computer Science, Algorithmic Bioinformatics, Bioinformatics

مصطلحات موضوعية: 113 Computer and information sciences

وصف الملف: application/pdf

العلاقة: This work was supported by the NIGMS Maximizing Investigators’ Research Award (MIRA) [R35 GM138152 to I.H.]. The content is solely the responsibility of the authors and does not necessarily represent the official views of the National Institutes of Health. M.R. is supported by St Petersburg State University [grant ID PURE: 73023672].; Meleshko , D , Prjbelski , A D , Raiko , M , Tomescu , A I , Tilgner , H & Hajirasouliha , I 2024 , ' CLOUDRNASPADES : Isoform assembly using bulk barcoded RNA sequencing data ' , Bioinformatics , vol. 40 , no. 2 , btad781 . https://doi.org/10.1093/bioinformatics/btad781Test; ORCID: /0000-0002-5747-8350/work/154555703; ORCID: /0000-0003-2816-4608/work/154556924; 85184668200; f83780b8-ecaf-4172-9768-a9118fb3fbb1; http://hdl.handle.net/10138/571732Test

الإتاحة: http://hdl.handle.net/10138/571732Test

المؤلفون: Meleshko, Dmitry, Prjbelski, Andrey D, Raiko, Mikhail, Tomescu, Alexandru I, Tilgner, Hagen, Hajirasouliha, Iman

المساهمون: Kendziorski, Christina, NIGMS Maximizing Investigators’ Research Award

المصدر: Bioinformatics ; volume 40, issue 2 ; ISSN 1367-4811

الإتاحة: https://doi.org/10.1093/bioinformatics/btad781Test
https://academic.oup.com/bioinformatics/article-pdf/40/2/btad781/56619426/btad781.pdfTest

المؤلفون: Prjibelski, Andrey D., Mikheenko, Alla, Joglekar, Anoushka, Smetanin, Alexander, Jarroux, Julien, Lapidus, Alla L., Tilgner, Hagen U.

المساهمون: Department of Computer Science, Algorithmic Bioinformatics

مصطلحات موضوعية: 113 Computer and information sciences

وصف الملف: application/pdf

العلاقة: We thank Nanopore WGS consortium and Ali Mortazavi’s laboratory at the University of California, Irvine for making the ONT and PacBio data publicly available. This work was supported by St. Petersburg State University, Russia (grant ID no. PURE 93023437 to A.M., A.S., A.L.L. and A.D.P.). Scientific research was performed at the Research Park of St. Petersburg State University Computing Center.; Prjibelski , A D , Mikheenko , A , Joglekar , A , Smetanin , A , Jarroux , J , Lapidus , A L & Tilgner , H U 2023 , ' Accurate isoform discovery with IsoQuant using long reads ' , Nature Biotechnology , vol. 41 . https://doi.org/10.1038/s41587-022-01565-yTest; ORCID: /0000-0003-2816-4608/work/139919769; 85145283267; d50d2b51-eb1e-42aa-a6b1-1105d02c059b; http://hdl.handle.net/10138/563615Test; 000909067600010

الإتاحة: http://hdl.handle.net/10138/563615Test

المؤلفون: Hawrylycz, Michael, Martone, Maryann E., Ascoli, Giorgio A., Bjaalie, Jan G., Dong, Hong-Wei, Ghosh, Satrajit S., Gillis, Jesse, Hertzano, Ronna, Haynor, David R., Hof, Patrick R., Kim, Yongsoo, Lein, Ed, Liu, Yufeng, Miller, Jeremy A., Mitra, Partha P., Mukamel, Eran, Ng, Lydia, Osumi-Sutherland, David, Peng, Hanchuan, Ray, Patrick L., Sanchez, Raymond, Regev, Aviv, Ropelewski, Alex, Scheuermann, Richard H., Tan, Shawn Zheng Kai, Thompson, Carol L., Tickle, Timothy, Tilgner, Hagen, Varghese, Merina, Wester, Brock, White, Owen, Zeng, Hongkui, Aevermann, Brian, Allemang, David, Ament, Seth, Athey, Thomas L., Baker, Cody, Baker, Katherine S., Baker, Pamela M., Bandrowski, Anita, Banerjee, Samik, Bishwakarma, Prajal, Carr, Ambrose, Chen, Min, Choudhury, Roni, Cool, Jonah, Creasy, Heather, D'Orazi, Florence, Degatano, Kylee, Dichter, Benjamin, Ding, Song-Lin, Dolbeare, Tim, Ecker, Joseph R., Fang, Rongxin, Fillion-Robin, Jean-Christophe, Fliss, Timothy P., Gee, James, Gillespie, Tom, Gouwens, Nathan, Zhang, Guo-Qiang, Halchenko, Yaroslav O., Harris, Nomi L., Herb, Brian R., Hintiryan, Houri, Hood, Gregory, Horvath, Sam, Huo, Bingxing, Jarecka, Dorota, Jiang, Shengdian, Khajouei, Farzaneh, Kiernan, Elizabeth A., Kir, Huseyin, Kruse, Lauren, Lee, Changkyu, Lelieveldt, Boudewijn, Li, Yang, Liu, Hanqing, Liu, Lijuan, Markuhar, Anup, Mathews, James, Mathews, Kaylee L., Mezias, Chris, Miller, Michael I., Mollenkopf, Tyler, Mufti, Shoaib, Mungall, Christopher J., Orvis, Joshua, Puchades, Maja, Qu, Lei, Receveur, Joseph P., Ren, Bing, Sjoquist, Nathan, Staats, Brian, Tward, Daniel, van Velthoven, Cindy T.J., Wang, Quanxin, Xie, Fangming, Xu, Hua, Yao, Zizhen, Yun, Zhixi, Zhang, Yun Renee, Zheng, W. Jim, Zingg, Brian

المصدر: 1544-9173.

العلاقة: Hawrylycz, Michael Martone, Maryann E. Ascoli, Giorgio A. Bjaalie, Jan G. Dong, Hong-Wei Ghosh, Satrajit S. Gillis, Jesse Hertzano, Ronna Haynor, David R. Hof, Patrick R. Kim, Yongsoo Lein, Ed Liu, Yufeng Miller, Jeremy A. Mitra, Partha P. Mukamel, Eran Ng, Lydia Osumi-Sutherland, David Peng, Hanchuan Ray, Patrick L. Sanchez, Raymond Regev, Aviv Ropelewski, Alex Scheuermann, Richard H. Tan, Shawn Zheng Kai Thompson, Carol L. Tickle, Timothy Tilgner, Hagen Varghese, Merina Wester, Brock White, Owen Zeng, Hongkui Aevermann, Brian Allemang, David Ament, Seth Athey, Thomas L. Baker, Cody Baker, Katherine S. Baker, Pamela M. Bandrowski, Anita Banerjee, Samik Bishwakarma, Prajal Carr, Ambrose Chen, Min Choudhury, Roni Cool, Jonah Creasy, Heather D'Orazi, Florence Degatano, Kylee Dichter, Benjamin Ding, Song-Lin Dolbeare, Tim Ecker, Joseph R. Fang, Rongxin Fillion-Robin, Jean-Christophe Fliss, Timothy P. Gee, James Gillespie, Tom Gouwens, Nathan Zhang, Guo-Qiang Halchenko, Yaroslav O. Harris, Nomi L. Herb, Brian R. Hintiryan, Houri Hood, Gregory Horvath, Sam Huo, Bingxing Jarecka, Dorota Jiang, Shengdian Khajouei, Farzaneh Kiernan, Elizabeth A. Kir, Huseyin Kruse, Lauren Lee, Changkyu Lelieveldt, Boudewijn Li, Yang Liu, Hanqing Liu, Lijuan Markuhar, Anup Mathews, James Mathews, Kaylee L. Mezias, Chris Miller, Michael I. Mollenkopf, Tyler Mufti, Shoaib Mungall, Christopher J. Orvis, Joshua Puchades, Maja Qu, Lei Receveur, Joseph P. Ren, Bing Sjoquist, Nathan Staats, Brian Tward, Daniel van Velthoven, Cindy T.J. Wang, Quanxin Xie, Fangming Xu, Hua Yao, Zizhen Yun, Zhixi Zhang, Yun Renee Zheng, W. Jim Zingg, Brian . A guide to the BRAIN Initiative Cell Census Network data ecosystem. PLoS Biology. 2023, 21(6); http://hdl.handle.net/10852/105029Test; 2168914; info:ofi/fmt:kev:mtx:ctx&ctx_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.jtitle=PLoS Biology&rft.volume=21&rft.spage=&rft.date=2023; PLoS Biology; 21; https://doi.org/10.1371/journal.pbio.3002133Test

الإتاحة: https://doi.org/10.1371/journal.pbio.3002133Test
http://hdl.handle.net/10852/105029Test

المؤلفون: Joglekar, Anoushka, Foord, Careen, Jarroux, Julien, Pollard, Shaun, Tilgner, Hagen U

المساهمون: NIGMS

المصدر: Transcription ; volume 14, issue 3-5, page 92-104 ; ISSN 2154-1264 2154-1272

الإتاحة: https://doi.org/10.1080/21541264.2023.2213514Test

المؤلفون: Glusman, Gustavo, Rose, Peter W, Prlić, Andreas, Dougherty, Jennifer, Duarte, José M, Hoffman, Andrew S, Barton, Geoffrey J, Bendixen, Emøke, Bergquist, Timothy, Bock, Christian, Brunk, Elizabeth, Buljan, Marija, Burley, Stephen K, Cai, Binghuang, Carter, Hannah, Gao, JianJiong, Godzik, Adam, Heuer, Michael, Hicks, Michael, Hrabe, Thomas, Karchin, Rachel, Leman, Julia Koehler, Lane, Lydie, Masica, David L, Mooney, Sean D, Moult, John, Omenn, Gilbert S, Pearl, Frances, Pejaver, Vikas, Reynolds, Sheila M, Rokem, Ariel, Schwede, Torsten, Song, Sicheng, Tilgner, Hagen, Valasatava, Yana, Zhang, Yang, Deutsch, Eric W

المصدر: Genome medicine. 9(1)

مصطلحات موضوعية: Humans, Sequence Analysis, Protein, Protein Conformation, Polymorphism, Genetic, Algorithms, Congresses as Topic, Genome-Wide Association Study, Networking and Information Technology R&D, Human Genome, Biotechnology, Genetics, Generic health relevance, Clinical Sciences

وصف الملف: application/pdf

الوصول الحر: https://escholarship.org/uc/item/6hr1z2pdTest

المؤلفون: Pardo-Palacios, Francisco J, Wang, Dingjie, Reese, Fairlie, Diekhans, Mark, Carbonell-Sala, Sílvia, Williams, Brian, Loveland, Jane E, De María, Maite, Adams, Matthew S, Balderrama-Gutierrez, Gabriela, Behera, Amit K, Gonzalez, Jose M, Hunt, Toby, Lagarde, Julien, Liang, Cindy E, Li, Haoran, Jerryd Meade, Marcus, Moraga Amador, David A, Prjibelski, Andrey D, Birol, Inanc, Bostan, Hamed, Brooks, Ashley M, Hasan Çelik, Muhammed, Chen, Ying, Du, Mei RM, Felton, Colette, Göke, Jonathan, Hafezqorani, Saber, Herwig, Ralf, Kawaji, Hideya, Lee, Joseph, Liang Li, Jian, Lienhard, Matthias, Mikheenko, Alla, Mulligan, Dennis, Ming Nip, Ka, Pertea, Mihaela, Ritchie, Matthew E, Sim, Andre D, Tang, Alison D, Kei Wan, Yuk, Wang, Changqing, Wong, Brandon Y, Yang, Chen, Barnes, If, Berry, Andrew, Capella, Salvador, Dhillon, Namrita, Fernandez-Gonzalez, Jose M, Ferrández-Peral, Luis, Garcia-Reyero, Natàlia, Goetz, Stefan, Hernández-Ferrer, Carles, Kondratova, Liudmyla, Liu, Tianyuan, Martinez-Martin, Alessandra, Menor, Carlos, Mestre-Tomás, Jorge, Mudge, Jonathan M, Panayotova, Nedka G, Paniagua, Alejandro, Repchevsky, Dmitry, Rouchka, Eric, Saint-John, Brandon, Sapena, Enrique, Sheynkman, Leon, Laird Smith, Melissa, Suner, Marie-Marthe, Takahashi, Hazuki, Youngworth, Ingrid Ashley, Carninci, Piero, Denslow, Nancy D, Guigó, Roderic, Hunter, Margaret E, Tilgner, Hagen U, Wold, Barbara J, Vollmers, Christopher, Frankish, Adam, Fai Au, Kin, Sheynkman, Gloria M, Mortazavi, Ali, Conesa, Ana, Brooks, Angela N

المصدر: bioXRiv: Cold Spring Harbor, NY, USA. (2023)

وصف الملف: text

العلاقة: https://discovery.ucl.ac.uk/id/eprint/10179435/1/2023.07.25.550582v1.full.pdfTest; https://discovery.ucl.ac.uk/id/eprint/10179435Test/

الإتاحة: https://discovery.ucl.ac.uk/id/eprint/10179435/1/2023.07.25.550582v1.full.pdfTest
https://discovery.ucl.ac.uk/id/eprint/10179435Test/