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المؤلفون: Methinee Pipatthana, Surang Chankhamhaengdecha, Somsak Likhitrattanapisal, Tavan Janvilisri, Matthew Phanchana, Phurt Harnvoravongchai, Pisut Pongchaikul
المصدر: Computational and Structural Biotechnology Journal
COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL
Computational and Structural Biotechnology Journal, Vol 19, Iss, Pp 2905-2920 (2021)مصطلحات موضوعية: SP, Substrate-binding domain (SBD)-containing protein, Protein domain, Biophysics, ATP-binding cassette transporter, Computational biology, Biology, In silico analysis, Antimicrobial resistance, Biochemistry, Genome, 03 medical and health sciences, TP, Transmembrane protein, 0302 clinical medicine, Structural Biology, Genetics, NP, Nucleotide-binding domain (NBD)-containing protein, ABC transporter/protein, ATP-binding cassette transporter/protein, ECF-type transporter, Energy coupling factor-type transporter, 030304 developmental biology, ComputingMethodologies_COMPUTERGRAPHICS, 0303 health sciences, TMD, Transmembrane domain, SBD, Substrate-binding domain, Signal transducing adaptor protein, Computer Science Applications, Transmembrane domain, NBD, Nucleotide-binding domain, Membrane protein, 030220 oncology & carcinogenesis, Active transporter, ABC classification, Function (biology), TP248.13-248.65, Reference genome, Biotechnology, Research Article
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الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c7e9053af190d87883dd74f55d18bd6dTest
http://europepmc.org/articles/PMC8144104Test -
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المؤلفون: Claudio D. Schuster, David Hoogewijs, Sabine Van Doorslaer, Salvador I. Drusin, Luc Moens, Sylvia Dewilde, Catherine Vénien-Bryan, Marcelo A. Martí, Frank Sobott, Dietmar Hammerschmid, Charline Fagnen, Francesca Germani
المساهمون: Institut de minéralogie, de physique des matériaux et de cosmochimie (IMPMC), Muséum national d'Histoire naturelle (MNHN)-Institut de recherche pour le développement [IRD] : UR206-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS), Laboratoire de biologie et pharmacologie appliquée (LBPA), Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS)-Ecole Normale Supérieure Paris-Saclay (ENS Paris Saclay), Université de Fribourg = University of Fribourg (UNIFR), Universidad de Buenos Aires [Buenos Aires] (UBA), Biomedical Sciences, University of Antwerp (UA), University of Antwerp, Department of Physics, University of Leeds
المصدر: Computational and Structural Biotechnology Journal
Computational and Structural Biotechnology Journal, 2021, 19, pp.1874-1888. ⟨10.1016/j.csbj.2021.03.031⟩
Computational and Structural Biotechnology Journal, Vol 19, Iss, Pp 1874-1888 (2021)مصطلحات موضوعية: DPV, differential pulse voltammetry, PDE, phosphodiesterase, Transmembrane-coupled globins, [SDV]Life Sciences [q-bio], SaktrHb, Streptomyces avermitilis truncated hemoglobin-antibiotic monooxygenase, Biochemistry, Transmembrane domain, TmD, Transmembrane domain, chemistry.chemical_compound, 0302 clinical medicine, Structural Biology, Globin-coupled sensor, RR, resonance Raman, TD, Transmitter domain, IM-MS, ion mobility-mass spectrometry, GsGCS162, GD of GsGCS, Geobacter sulfurreducens, Heme, 0303 health sciences, CeGLB26, Caenorhabditis elegans globin 26, biology, Gb, globin, CIU, collision-induced unfolding, CMC, critical micelle concentration, PccGCS, Pectobacterium carotivorum GCS, CV, cyclic voltammetry, Transmembrane protein, Computer Science Applications, Chemistry, GD, globin domain, 030220 oncology & carcinogenesis, MtTrHbO, Mycobacterium tuberculosis truncated hemoglobin O, Signal transduction, Engineering sciences. Technology, Research Article, PcMb, Physether catodon myoglobin, Biotechnology, AfGcHK, Anaeromyxobacter sp. Fw109-5 GcHK, BsHemAT, Bacillus subtilis HemAT, NH4OAc, ammonium acetate, LmHemAC, Leishmania major HemAC, CeGLB6, Caenorhabditis elegans globin 6, Biophysics, GGDEF, Gly-Gly-Asp-Glu-Phe motive, GCS, globin-coupled sensor, AsFRMF, Ascaris suum FRMF-amide receptor, SwMb, myoglobin from sperm whale, GintHb, hemoglobin from Gasterophilus intestinalis, 03 medical and health sciences, Tetramer, Genetics, SHE, standard hydrogen electrode, BpGReg, Bordetella pertussis Greg, GsGCS, Geobacter sulfurreducens GCS, AvGReg, Azotobacter vinilandii Greg, Globin, MaPgb, Methanosarcina acetivorans protoglobin, Biology, ComputingMethodologies_COMPUTERGRAPHICS, CeGLB33, Caenorhabditis elegans globin 33, 030304 developmental biology, EcDosC, Escherichia coli Dos with DGC activity, OG, n-octyl-β-d-glucopyranoside, DDM, n-dodecyl-β-d-maltoside, biology.organism_classification, FMRF, H-Phe-Met-Arg-Phe-NH2 neuropeptide, PsiE, phosphate-starvation-inducible E, SCE, saturated calomel electrode, chemistry, mNgb, mouse neuroglobin, CCS, collision cross section, Linker, TP248.13-248.65
وصف الملف: application/pdf
الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::73706640625aa1c4d5a12de7e52b01b4Test
https://doi.org/10.1016/j.csbj.2021.03.031Test -
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المساهمون: Ministerio de Ciencia, Innovación y Universidades (España), Generalitat Valenciana, European Commission
المصدر: Computational and Structural Biotechnology Journal, Vol 18, Iss, Pp 3712-3722 (2020)
Sorribes-Dauden, Raquel Peris Navarro, David Martínez Pastor, María Teresa Puig Todolí, Sergi 2020 Structure and function of the vacuolar Ccc1/VIT1 family of iron transporters and its regulation in fungi Computational And Structural Biotechnology Journal 18 3712 3722
RODERIC: Repositorio Institucional de la Universitat de Valéncia
Universitat de València
Digital.CSIC. Repositorio Institucional del CSIC
instname
RODERIC. Repositorio Institucional de la Universitat de Valéncia
Computational and Structural Biotechnology Journalمصطلحات موضوعية: ISC, Iron-sulfur luster, CS, Consistency score, Ccc1, Ribosome biogenesis, Vacuole, Review Article, YRE, Yap response elements, Biochemistry, Biotecnologia, 0302 clinical medicine, Structural Biology, Cg, Candida glabrata, 0303 health sciences, MAFFT, Multiple Alignment using Fast Fourier Transform, NRAMP, Natural Resistance-Associated Macrophage Protein, biology, VIT1, Chemistry, MBD, Metal-binding domain, Plants, Computer Science Applications, 030220 oncology & carcinogenesis, CRD, Cysteine-rich domain, Eg, Eucalyptus grandis, Iron detoxification, Biotechnology, CBC, CCAAT-binding core complex, lcsh:Biotechnology, Saccharomyces cerevisiae, VTL, Vacuolar iron transporter-like, Biophysics, VIT, Vacuolar iron transporter, bZIP, basic leucine-zipper, 03 medical and health sciences, Fongs, Lipid biosynthesis, lcsh:TP248.13-248.65, Genetics, Fe, Iron, Iron transport, Transcription factor, 030304 developmental biology, ComputingMethodologies_COMPUTERGRAPHICS, BLOSUM, BLOcks SUbstitution Matrix, TMD, Transmembrane domain, ML, Maximum-likelihood, Iron regulation, DNA replication, Fungi, biology.organism_classification, Yeast, Metabolic pathway, H, Helix, Hap, Heme activator protein, ROS, Reactive oxygen species, Ferro
الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e19a7472616cb2fcad1e8ec6dc6e5551Test
http://www.sciencedirect.com/science/article/pii/S2001037020304669Test -
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المؤلفون: Marina Shenkman, Neeraj Sharma, Nir Ben-Tal, Gerardo Z. Lederkremer, Chaitanya Patel, Amit Kessel
المصدر: The Journal of Biological Chemistry
مصطلحات موضوعية: TG, thapsigargin, Strep, streptavidin, TMD, transmembrane domain, Endoplasmic Reticulum, Biochemistry, ER, endoplasmic reticulum, membrane topology, Humans, Receptors, sigma, Molecular Biology, CNX, calnexin, Calcium signaling, sulfo-NHS-LC-Biotin, sulfosuccinimidyl-6-(biotinamido)hexanoate, Sigma-1 receptor, Chemistry, Endoplasmic reticulum, S1R, Sigma-1 receptor, neurodegeneration, ER retention, Cell Biology, Intracellular Membranes, MAM, mitochondrion-associated membranes, Transmembrane protein, Cell biology, HEK293 Cells, cell surface, Membrane protein, sigma-1 receptor, Membrane topology, Unfolded protein response, BAP, biotin acceptor peptide, ER stress, Research Article
الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::cd8ce8865974da911ce3941dccddc42bTest
https://pubmed.ncbi.nlm.nih.gov/34648767Test -
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المؤلفون: Nadine, Zimmann, Petr, Rada, Vojtěch, Žárský, Tamara, Smutná, Kristína, Záhonová, Joel, Dacks, Karel, Harant, Ivan, Hrdý, Jan, Tachezy
المصدر: Molecular & Cellular Proteomics : MCP
مصطلحات موضوعية: Proteomics, CP, cysteine protease, ST, sucrose-tris buffer, LAMP, lysosome-associated membrane glycoprotein, BFA, Brefeldin A, MPR, mannose 6-phopshate receptor, SNAP, soluble N-ethylmaleimide-sensitive-factor attachment protein, DMAP, DNA methyltransferase-associated protein, TMD, transmembrane domain, BA, β-amylase, TEAB, triethylammonium bicarbonate, Cysteine Proteases, Phagosomes, TSP, tetraspanin, MPR300, mannose 6-phopshate receptor 300, mCLCP, mutated cathepsin L-like cysteine peptidase, CD-MPR, cation-dependent mannose 6-phosphate receptor, LTS, lysosomal targeting sequence, LFQ MS, label-free quantitative mass spectrometry, MRH, mannose 6-phosphate receptor homology, SNARE, SNAP receptor, CPBF1, cysteine protease-binding protein family 1, TYM, tryptone-yeast extract-maltose medium, nanoLC-MS, nano reverse-phase liquid chromatography mass spectrometry, NHS, N-hydroxysuccinimide, bHX, β-hexosaminidase, FITC, fluorescein isothiocyanate, SDC, sodium deoxycholate, MES, 2-[n-morpholino]-ethanesulfonic acid buffer, TLCK, tosyl-L-lysyl-chloromethane hydrochloride, glycosylation, proteome, PBS, phosphate-buffered saline, vATPase, vacuolar ATPase, CLCP, cathepsin L-like cysteine peptidase, LGF, large granule fraction, ER, endoplasmic reticulum, mannose 6-phosphate receptor, TCA, trichloracetic acid, Trichomonas vaginalis, Humans, GGA, Golgi-localized, γ-ear-containing, ADP ribosylation factor-binding protein, Cysteine, GlcNAc-PT, N-acetylglucosamine-1-phosphotransferase, s-LTS, lysosomal targeting sequence of soluble protein, TGN, trans Golgi network, UCE, uncovering enzyme, N-acetylglucosamine-1-phosphodiester α-N-acetylglucosaminidase, AP, acid phosphatase, Research, M6P, mannose 6-phosphate, CI-MPR, cation-independent mannose 6-phosphate receptor, LERP, lysosomal enzyme receptor protein, EDC, 1-ethyl-3-[3-dimethylaminopropyl] carbodiimide hydrochloride, mBA, mutated β-amylase, CLQ, chloroquine, TBSR, Trichomonas beta-sandwich repeat protein, MS, mass spectrometry, BBS, borate buffered saline, phagolysosome, t-LTS, lysosomal targeting sequence of transmembrane protein, Lysosomes, cysteine peptidase, LF, lactoferrin, Peptide Hydrolases, HA, hemagglutinin
الوصول الحر: https://explore.openaire.eu/search/publication?articleId=pmid________::d8b7a8dffd0ed0f52289b27ed2884830Test
https://pubmed.ncbi.nlm.nih.gov/34763061Test -
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المؤلفون: Zhen Li, Xianbin Tian, Lilian Kisiswa, Ajeena Ramanujan, Ning Zhang, Carlos F. Ibáñez, Wensu Yuan, Zhi Lin, Eunice Weiling Sim
المصدر: Zhang, N, Kisiswa, L, Ramanujan, A, Li, Z, Sim, E W, Tian, X, Yuan, W, Ibáñez, C F & Lin, Z 2021, ' Structural basis of NF-κB signaling by the p75 neurotrophin receptor interaction with adaptor protein TRADD through their respective death domains ', Journal of Biological Chemistry, vol. 297, no. 2, 100916 . https://doi.org/10.1016/j.jbc.2021.100916Test
The Journal of Biological Chemistryمصطلحات موضوعية: Male, PEI, polyethylenimine, 0301 basic medicine, Protein Conformation, TMD, transmembrane domain, Receptor, Nerve Growth Factor, Biochemistry, RMSD, root mean square deviation, Neurotrophic factors, Low-affinity nerve growth factor receptor, p75 neurotrophin receptor, Mice, Knockout, Neurons, biology, NF-kappa B, Signal transducing adaptor protein, DD, death domain, TNF Receptor-Associated Death Domain Protein, Cell biology, NT, neurotrophin, Female, TRADD, TNF receptor associated death domain, Signal Transduction, Research Article, Neurotrophin, Cell signaling, death domain, NGFR, nerve growth factor receptor, ICD, intracellular domain, Nerve Tissue Proteins, Receptors, Nerve Growth Factor, p75NTR, p75 neurotrophin receptor, TNFRSF, tumor necrosis factor receptor superfamily, 03 medical and health sciences, ECD, extracellular cysteine-rich domain, Animals, Humans, cell signaling, Protein Interaction Domains and Motifs, protein structure, NMR, nuclear magnetic resonance, Molecular Biology, Death domain, 030102 biochemistry & molecular biology, ES, embryonic stem, Cell Biology, TRADD, NMR, Mice, Inbred C57BL, CGN, cerebellar granule neuron, 030104 developmental biology, Nerve growth factor, biology.protein, sense organs
الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::3d0bbd2cb844bf0783353c7d641f4ec8Test
https://pure.au.dk/portal/da/publications/structural-basis-of-nfb-signaling-by-the-p75-neurotrophin-receptor-interaction-with-adaptor-protein-tradd-through-their-respective-death-domainsTest(955eafca-a0a5-442c-8b0e-8eceffee7ca1).html -
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المؤلفون: Fozia Ahmed, Kalina Hristova, Sergey A. Goncharuk, Andrea Soler-Lopez, Marçal Vilar, Kirill D. Nadezhdin, Taylor P. Light, Konstantin S. Mineev, Alexander S. Arseniev, María Luisa Franco
المساهمون: Ministerio de Economía y Competitividad (España), Generalitat Valenciana, National Institutes of Health (US), Russian Science Foundation, Vilar, Marçal, Vilar, Marçal [0000-0002-9376-6544]
المصدر: The Journal of Biological Chemistry
Digital.CSIC. Repositorio Institucional del CSIC
instnameمصطلحات موضوعية: Receptor complex, TMD, transmembrane domain, Tropomyosin receptor kinase B, eYFP, enhanced YFP, Tropomyosin receptor kinase A, Biochemistry, mTurq, mTurquoise, PC12 Cells, Receptor, Nerve Growth Factor, Transmembrane domain, CG, coarse-grained, FSI, fully quantified spectral imaging, Receptor, FGFR3, fibroblast growth factor receptor 3, LPR, lipid-to-protein ratio, NGF, DMEM, Dulbecco's modified Eagle's medium, biology, Chemistry, TrkA, neurotrophin, TrkB, Cell Differentiation, transmembrane domain, POPC, 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine, MD, molecular dynamics, TNFR, tumor necrosis factor receptor, Cell biology, p75ntr, NT, neurotrophin, Neurotrophin, CS, chemical shift, Research Article, Protein Binding, musculoskeletal diseases, p75, animal structures, Neurogenesis, ICD, intracellular domain, NGF, nerve growth factor, FBS, fetal bovine serum, Protein Domains, DPC, dodecylphosphocholine, TrkA, tyrosine protein kinase receptor A, Animals, Receptor, trkA, Protein kinase A, Molecular Biology, LAT, linker for the activation of T-cells, Cell Biology, biological factors, NMR, Rats, Nerve growth factor, nervous system, biology.protein, sense organs, FA, full-atom
الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::85af64fd4aa64a56d2d99d9492ad5817Test
http://europepmc.org/articles/PMC8327350Test -
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المؤلفون: Marijke Brams, Diletta Pasini, Akshay Sridhar, Chris Ulens, Sarah C. R. Lummis, Kumiko Kambara, Rebecca J. Howard, Aujan Mehregan, Erik Lindahl, Daniel Bertrand
المساهمون: Lummis, Sarah [0000-0001-9410-9805], Apollo - University of Cambridge Repository
المصدر: The Journal of Biological Chemistry
Journal of Biological Chemistryمصطلحات موضوعية: DYNAMICS, MECHANISM, 0301 basic medicine, Models, Molecular, POPG, palmitoyloleoylphosphatidylglycerol, TMD, transmembrane domain, DOTAP, dipalmitoyl-3-trimethylammonium-propane, PG, phosphatidylglycerol, Crystallography, X-Ray, Biochemistry, ACTIVATION, chemistry.chemical_compound, PC, phosphatidylcholine, Xenopus laevis, Chemistry, GABAA receptor, Editors' Pick, Lipids, Transmembrane domain, VSD, voltage-sensor domain, K+ CHANNEL, Ligand-gated ion channel, Protein Structural Elements, Signal transduction, site-directed mutagenesis, Life Sciences & Biomedicine, Research Article, Protein Binding, STRUCTURAL BASIS, Biochemistry & Molecular Biology, SOFTWARE NEWS, Protein subunit, ICD, intracellular domain, Cys-loop receptor, POPC, palmitoyloleoylphosphatidylcholine, PE, phosphatidylethanolamine, Cell Line, 03 medical and health sciences, pLGIC, pentameric ligand-gated ion channel, Cations, Animals, Humans, Molecular Biology, POPC, Ion channel, G protein-coupled receptor, GPCR, G-protein-coupled receptor, Science & Technology, RECEPTOR, 030102 biochemistry & molecular biology, RMSD, root-mean-squared deviation, Cell Biology, Ligand-Gated Ion Channels, electrophysiology, nAChR, nicotinic acetylcholine receptor, ECD, extracellular domain, WT, wild-type, molecular dynamics, PROTEIN INTERACTIONS, 030104 developmental biology, GENERAL-ANESTHETICS, Biophysics, Oocytes, ELIC, pentameric ligand-gated ion channel, X-RAY-STRUCTURE
وصف الملف: application/pdf; Print-Electronic
الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a1b160ea3186d551ffde4ccf17635eb8Test
http://europepmc.org/articles/PMC8327344Test -
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المؤلفون: Becky Provinciael, Eberhard Krause, Claudia Rutz, Dominique Schols, Heike Stephanowitz, Joren Stroobants, Eva Pauwels, Enno Hartmann, Kurt Vermeire, Ralf Schülein
المصدر: Molecular & Cellular Proteomics : MCP
مصطلحات موضوعية: Signal peptide, Proteomics, CADA, cyclotriazadisulfonamide, SILAC, stable isotope labeling by amino acids in cell culture, T-Lymphocytes, V5, virus 5, cyclotriazadisulfonamide, ERAD, endoplasmic reticulum–associated degradation, TMD, transmembrane domain, Endoplasmic-reticulum-associated protein degradation, DMSO, dimethyl sulfoxide, Endoplasmic Reticulum, ER cotranslational translocation, ERLEC1, endoplasmic reticulum lectin 1, SILAC, SAS, signal anchor sequence, Cell Line, Substrate Specificity, ER, endoplasmic reticulum, Stable isotope labeling by amino acids in cell culture, Humans, signal peptide, DNAJC3, DnaJ homolog subfamily C member 3, PL, prolactin, eGFP, enhanced GFP, Integral membrane protein, SORT, sortilin, Inactive Tyrosine-Protein Kinase 7, Sulfonamides, huCD4, human CD4, Chemistry, Endoplasmic reticulum, Research, Membrane Proteins, General Medicine, HEK293T, human embryonic kidney 293T, BFP, blue fluorescent protein, CD4, Cell biology, Membrane protein, Isotope Labeling, SP, signal peptide, DNAJC3, tGFP, turbo GFP, PTK7, inactive tyrosine-protein kinase 7, small-molecule inhibitor
وصف الملف: Print-Electronic
الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::29fa4c29ffd398e3d63aa5ece3f08763Test
https://pubmed.ncbi.nlm.nih.gov/34481949Test -
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المؤلفون: Shu-ou Shan, Yumeng Liu, Hyunju Cho, Woo Jun Shim
المصدر: The Journal of Biological Chemistry
مصطلحات موضوعية: 0301 basic medicine, tail-anchored protein, NBD, nucleotide binding domain, Saccharomyces cerevisiae Proteins, ATPase, TMD, transmembrane domain, membrane proteins, JDP, J-domain protein, Saccharomyces cerevisiae, SRP, signal recognition particle, Endoplasmic Reticulum, medicine.disease_cause, Biochemistry, Hsp70, 03 medical and health sciences, Protein targeting, protein targeting, medicine, HSP70 Heat-Shock Proteins, Molecular Biology, EV, empty vector, Signal recognition particle, Hsp40, TPR, tetratricopeptide repeat, 030102 biochemistry & molecular biology, biology, SBD, substrate binding domain, Chemistry, C-terminus, Cell Membrane, GET, guided entry of tail-anchored protein, Editors' Pick, Cell Biology, molecular chaperone, HSP40 Heat-Shock Proteins, CTD, C-terminal domain, SND, SRP-independent, Cell biology, Protein Transport, Tetratricopeptide, 030104 developmental biology, Membrane protein, Cyclic nucleotide-binding domain, biology.protein, Carrier Proteins, Biogenesis, Research Article, Protein Binding
وصف الملف: application/pdf
الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ca9faa735b7e4cad00a3ec62a45a219fTest
https://resolver.caltech.edu/CaltechAUTHORS:20210317-150527513Test