المؤلفون: Daniel J. Jackson, Nicolas Cerveau, Nico Posnien

المصدر: Frontiers in Zoology, Vol 21, Iss 1, Pp 1-18 (2024)

مصطلحات موضوعية: Transcriptome assembly, De novo assembly, RNA-seq, Short reads, Emerging model system, Genome, Zoology, QL1-991

وصف الملف: electronic resource

العلاقة: https://doaj.org/toc/1742-9994Test

الوصول الحر: https://doaj.org/article/6f7c66c1f1544864849c64ffb990ec76Test

المؤلفون: David, Gabriel, Bertolotti, Alicia, Layer, Ryan, Scofield, Douglas, 1966, Hayward, Alexander, Baril, Tobias, Burnett, Hamish A., Gudmunds, Erik, Jensen, Henrik, Husby, Arild, Associate Senior Lecturer

المصدر: Genome Biology and Evolution. 16(4)

مصطلحات موضوعية: structural variation, short reads, high-confidence variants, rapid manual curation, curation strategies, putative false positives

وصف الملف: electronic

الوصول الحر: https://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-527888Test
https://doi.org/10.1093/gbe/evae049Test
https://uu.diva-portal.org/smash/get/diva2:1857858/FULLTEXT01.pdfTest

المؤلفون: Hui Sun, Yingfeng Zheng, Haonan Xie, Huidong Ma, Xiaoguang Liu, Gang Wang

المصدر: BMC Bioinformatics, Vol 24, Iss 1, Pp 1-15 (2023)

مصطلحات موضوعية: Short reads data, Data compression, Fastq, Parallel algorithm, Computer applications to medicine. Medical informatics, R858-859.7, Biology (General), QH301-705.5

وصف الملف: electronic resource

العلاقة: https://doaj.org/toc/1471-2105Test

الوصول الحر: https://doaj.org/article/1bc98b6a90b54fee85ab4eafd3217a09Test

المؤلفون: Martin Hölzer, Stephan Fuchs, René Kmiecinski, Kathrin Trappe, Marie Lataretu, Oliver Drechsel

المصدر: F1000Research, Vol 12 (2024)

مصطلحات موضوعية: SARS-CoV-2, genome reconstruction, whole-genome sequencing, short reads, Illumina, amplicons, eng, Medicine, Science

وصف الملف: electronic resource

العلاقة: https://f1000research.com/articles/12-1091/v2Test; https://doaj.org/toc/2046-1402Test

الوصول الحر: https://doaj.org/article/908a40cfdc384e6597bd400401c9d545Test

المؤلفون: Meiye Jiang, Meili Chen, Jingyao Zeng, Zhenglin Du, Jingfa Xiao

المصدر: Frontiers in Plant Science, Vol 15 (2024)

مصطلحات موضوعية: plant pan-genome, short-reads based construction strategies, evaluation, map-to-pan, iterative, Plant culture, SB1-1110

وصف الملف: electronic resource

العلاقة: https://www.frontiersin.org/articles/10.3389/fpls.2024.1371222/fullTest; https://doaj.org/toc/1664-462XTest

الوصول الحر: https://doaj.org/article/24a4942237464d10b74cc08ba1169dfcTest

المؤلفون: Paganini, Julian A, Kerkvliet, Jesse J, Vader, Lisa, Plantinga, Nienke L, Meneses, Rodrigo, Corander, Jukka, Willems, Rob J L, Arredondo-Alonso, Sergio, Schürch, Anita C

المساهمون: MMB Research line 2, Infection & Immunity

مصطلحات موضوعية: Anti-Bacterial Agents/pharmacology, Drug Resistance, Microbial, Escherichia coli/genetics, High-Throughput Nucleotide Sequencing, Plasmids/genetics, WGS, assembly graph, Escherichia coli, plasmids, short reads, antibiotic resistance, bioinformatics, Illumina, Genetics, Molecular Biology, Epidemiology, Microbiology, Journal Article

وصف الملف: application/pdf

العلاقة: https://dspace.library.uu.nl/handle/1874/451361Test

الإتاحة: https://dspace.library.uu.nl/handle/1874/451361Test

المؤلفون: Paganini, Julian A., Kerkvliet, Jesse J., Vader, Lisa, Plantinga, Nienke L., Meneses, Rodrigo, Corander, Jukka, Willems, Rob J.L., Arredondo-Alonso, Sergio, Schürch, Anita C.

المساهمون: Helsinki Institute for Information Technology, Jukka Corander / Principal Investigator, Department of Mathematics and Statistics

مصطلحات موضوعية: antibiotic resistance, assembly graph, bioinformatics, Escherichia coli, Illumina, plasmids, short reads, WGS, Statistics and probability

وصف الملف: application/pdf

العلاقة: This work was partially supported by ZonMW (The Netherlands) [541 003 005 to A.C.S.], the Netherlands Centre of One Health (NCOH Complex systems and metagenomics) and by DiSSeMINATE (LSHM19138). This collaboration project is co-funded by the PPP Allowance made available by Health-Holland, Top Sector Life Sciences and Health, to stimulate public–private partnerships. This work was partially supported by the European Union Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie Actions (grant No. 801133 to S.A.-A). This work was partially supported by ZonMW (The Netherlands) [541 003 005 to A.C.S.], the Netherlands Centre of One Health (NCOH Complex systems and metagenomics) and by DiSSeMINATE (LSHM19138). This collaboration project is co-funded by the PPP Allowance made available by Health~Holland, Top Sector Life Sciences and Health, to stimulate public–private partnerships. This work was partially supported by the European Union Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie Actions (grant No. 801133 to S.A.-A).; Paganini , J A , Kerkvliet , J J , Vader , L , Plantinga , N L , Meneses , R , Corander , J , Willems , R J L , Arredondo-Alonso , S & Schürch , A C 2024 , ' PlasmidEC and gplas2 : an optimized short-read approach to predict and reconstruct antibiotic resistance plasmids in Escherichia coli ' , Microbial Genomics , vol. 10 , no. 2 , 001193 . https://doi.org/10.1099/mgen.0.001193Test; http://hdl.handle.net/10138/574034Test; bf2ada74-54a0-4913-a197-d82eb0d15e8c; 85185688030; 001206004700004

الإتاحة: http://hdl.handle.net/10138/574034Test

المؤلفون: Luca Ermini, Patrick Driguez

المصدر: Cancers, Vol 16, Iss 7, p 1275 (2024)

مصطلحات موضوعية: third-generation sequencing, short reads, long reads, cancer, precision oncology, Neoplasms. Tumors. Oncology. Including cancer and carcinogens, RC254-282

وصف الملف: electronic resource

العلاقة: https://www.mdpi.com/2072-6694/16/7/1275Test; https://doaj.org/toc/2072-6694Test

الوصول الحر: https://doaj.org/article/c80a0a47414245398acd86241ff766e5Test

المؤلفون: Vilda Puji Dini Anita, Deden Derajat Matra, Ulfah Juniarti Siregar

المصدر: BMC Research Notes, Vol 16, Iss 1, Pp 1-4 (2023)

مصطلحات موضوعية: Draft Chloroplast Genome, Falcataria moluccana, Long-reads, Short-reads, Medicine, Biology (General), QH301-705.5, Science (General), Q1-390

وصف الملف: electronic resource

العلاقة: https://doaj.org/toc/1756-0500Test

الوصول الحر: https://doaj.org/article/f92da2a8166f4ad5b1357d21ae16ad31Test

المؤلفون: Kristoffer Sahlin

المصدر: Genome Biology, Vol 23, Iss 1, Pp 1-27 (2022)

مصطلحات موضوعية: Read alignment, Short-reads, Read mapping, Strobemers, Syncmers, Seed-and-extend, Biology (General), QH301-705.5, Genetics, QH426-470

وصف الملف: electronic resource

العلاقة: https://doaj.org/toc/1474-760XTest

الوصول الحر: https://doaj.org/article/0cee7d1b8fad4cf5ac2ffd833ef576f3Test