المؤلفون: Olivier Mailhot (11238207), Vincent Frappier (410086), François Major (28507), Rafael J. Najmanovich (517280)

مصطلحات موضوعية: Biophysics, Genetics, Molecular Biology, Cancer, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, multivariate linear regression, capture signal beyond, better predictive power, tested model able, anisotropic network model, using dynamical information, throughput mutational data, dynamical features identified, anm performs better, popular nma models, 125a maturation point, 125a maturation dataset, grained nma model, similar performance profile, human microrna mir, 3d structural dynamics, training set contains, widely used coarse, model unique, testing set, available data, anm ), sequence information, sequence features

العلاقة: https://figshare.com/articles/journal_contribution/Supplementary_information_/21727726Test

الإتاحة: https://doi.org/10.1371/journal.pcbi.1010777.s001Test

المؤلفون: Natália Teruel (11238204), Olivier Mailhot (11238207), Rafael J. Najmanovich (517280)

مصطلحات موضوعية: Biophysics, Biological Sciences not elsewhere classified, mode analysis, SARS-CoV -2 infection mechanisms, ACE, open-state, dynamic, flexibility, residue, P 1 strains, N 501Y mutation, SARS-CoV -2 Spike protein variants, SARS-CoV -2 Spike protein, 614G, transition, model

العلاقة: https://figshare.com/articles/journal_contribution/Putative_mutations_and_associated_VDS_S_sub_vib_open_sub_S_sub_vib_close_sub_in_units_of_J_K_sup_-1_sup_and_predicted_occupancies_with_open_occupancies_lower_than_for_the_wild_type_for_the_64_mutants_with_FDS_0_3_and_the_20_mutants_with_low/15120747Test

الإتاحة: https://doi.org/10.1371/journal.pcbi.1009286.s010Test

المؤلفون: Natália Teruel (11238204), Olivier Mailhot (11238207), Rafael J. Najmanovich (517280)

مصطلحات موضوعية: Biophysics, Biological Sciences not elsewhere classified, mode analysis, SARS-CoV -2 infection mechanisms, ACE, open-state, dynamic, flexibility, residue, P 1 strains, N 501Y mutation, SARS-CoV -2 Spike protein variants, SARS-CoV -2 Spike protein, 614G, transition, model

العلاقة: https://figshare.com/articles/journal_contribution/Amino_acid_mutations_associated_to_13741_sequences_of_the_Spike_protein_available_on_May_08_in_COVID-19_Viral_Genome_Analysis_Pipeline_enabled_by_data_from_GISAID_/15120741Test

الإتاحة: https://doi.org/10.1371/journal.pcbi.1009286.s008Test

المؤلفون: Natália Teruel (11238204), Olivier Mailhot (11238207), Rafael J. Najmanovich (517280)

مصطلحات موضوعية: Biophysics, Biological Sciences not elsewhere classified, mode analysis, SARS-CoV -2 infection mechanisms, ACE, open-state, dynamic, flexibility, residue, P 1 strains, N 501Y mutation, SARS-CoV -2 Spike protein variants, SARS-CoV -2 Spike protein, 614G, transition, model

العلاقة: https://figshare.com/articles/journal_contribution/Random_mutants_accumulating_from_one_to_four_mutations_/15120744Test

الإتاحة: https://doi.org/10.1371/journal.pcbi.1009286.s009Test

المؤلفون: Olivier Mailhot (11238207), Vincent Frappier (410086), François Major (28507), Rafael J. Najmanovich (517280)

مصطلحات موضوعية: Biophysics, Genetics, Molecular Biology, Cancer, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, multivariate linear regression, capture signal beyond, better predictive power, tested model able, anisotropic network model, using dynamical information, throughput mutational data, dynamical features identified, anm performs better, popular nma models, 125a maturation point, 125a maturation dataset, grained nma model, similar performance profile, human microrna mir, 3d structural dynamics, training set contains, widely used coarse, model unique, testing set, available data, anm ), sequence information, sequence features

العلاقة: https://figshare.com/articles/dataset/Training_set_for_the_hard_benchmark_/21727729Test

الإتاحة: https://doi.org/10.1371/journal.pcbi.1010777.s002Test

المؤلفون: Olivier Mailhot (11238207), Vincent Frappier (410086), François Major (28507), Rafael J. Najmanovich (517280)

مصطلحات موضوعية: Biophysics, Genetics, Molecular Biology, Cancer, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, multivariate linear regression, capture signal beyond, better predictive power, tested model able, anisotropic network model, using dynamical information, throughput mutational data, dynamical features identified, anm performs better, popular nma models, 125a maturation point, 125a maturation dataset, grained nma model, similar performance profile, human microrna mir, 3d structural dynamics, training set contains, widely used coarse, model unique, testing set, available data, anm ), sequence information, sequence features

العلاقة: https://figshare.com/articles/figure/Assignment_of_beads_on_the_four_standard_nucleotides_and_strength_of_base-base_interactions_in_the_different_models_/21727741Test

الإتاحة: https://doi.org/10.1371/journal.pcbi.1010777.g001Test

المؤلفون: Olivier Mailhot (11238207), Vincent Frappier (410086), François Major (28507), Rafael J. Najmanovich (517280)

مصطلحات موضوعية: Biophysics, Genetics, Molecular Biology, Cancer, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, multivariate linear regression, capture signal beyond, better predictive power, tested model able, anisotropic network model, using dynamical information, throughput mutational data, dynamical features identified, anm performs better, popular nma models, 125a maturation point, 125a maturation dataset, grained nma model, similar performance profile, human microrna mir, 3d structural dynamics, training set contains, widely used coarse, model unique, testing set, available data, anm ), sequence information, sequence features

العلاقة: https://figshare.com/articles/dataset/Testing_set_for_the_hard_benchmark_/21727732Test

الإتاحة: https://doi.org/10.1371/journal.pcbi.1010777.s003Test

المؤلفون: Olivier Mailhot (11238207), Vincent Frappier (410086), François Major (28507), Rafael J. Najmanovich (517280)

مصطلحات موضوعية: Biophysics, Genetics, Molecular Biology, Cancer, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, multivariate linear regression, capture signal beyond, better predictive power, tested model able, anisotropic network model, using dynamical information, throughput mutational data, dynamical features identified, anm performs better, popular nma models, 125a maturation point, 125a maturation dataset, grained nma model, similar performance profile, human microrna mir, 3d structural dynamics, training set contains, widely used coarse, model unique, testing set, available data, anm ), sequence information, sequence features

العلاقة: https://figshare.com/articles/dataset/Training_set_for_the_inverted_benchmark_/21727735Test

الإتاحة: https://doi.org/10.1371/journal.pcbi.1010777.s004Test

المؤلفون: Olivier Mailhot (11238207), Vincent Frappier (410086), François Major (28507), Rafael J. Najmanovich (517280)

مصطلحات موضوعية: Biophysics, Genetics, Molecular Biology, Cancer, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, multivariate linear regression, capture signal beyond, better predictive power, tested model able, anisotropic network model, using dynamical information, throughput mutational data, dynamical features identified, anm performs better, popular nma models, 125a maturation point, 125a maturation dataset, grained nma model, similar performance profile, human microrna mir, 3d structural dynamics, training set contains, widely used coarse, model unique, testing set, available data, anm ), sequence information, sequence features

العلاقة: https://figshare.com/articles/dataset/Testing_set_for_the_inverted_benchmark_/21727738Test

الإتاحة: https://doi.org/10.1371/journal.pcbi.1010777.s005Test

المؤلفون: Olivier Mailhot (11238207), Vincent Frappier (410086), François Major (28507), Rafael J. Najmanovich (517280)

مصطلحات موضوعية: Biophysics, Genetics, Molecular Biology, Cancer, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, multivariate linear regression, capture signal beyond, better predictive power, tested model able, anisotropic network model, using dynamical information, throughput mutational data, dynamical features identified, anm performs better, popular nma models, 125a maturation point, 125a maturation dataset, grained nma model, similar performance profile, human microrna mir, 3d structural dynamics, training set contains, widely used coarse, model unique, testing set, available data, anm ), sequence information, sequence features

العلاقة: https://figshare.com/articles/figure/Cumulative_overlap_between_normal_modes_and_conformational_changes_from_X-ray_crystallography_experiments_/21727750Test

الإتاحة: https://doi.org/10.1371/journal.pcbi.1010777.g004Test