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1دورية أكاديمية
المؤلفون: Zeiger, Andrew M, McGarry, Meghan E, Mak, Angel CY, Medina, Vivian, Salazar, Sandra, Eng, Celeste, Liu, Amy K, Oh, Sam S, Nuckton, Thomas J, Jain, Deepti, Blackwell, Thomas W, Kang, Hyun Min, Abecasis, Goncalo, Oñate, Leandra Cordero, Seibold, Max A, Burchard, Esteban G, Rodriguez‐Santana, Jose
المصدر: Pediatric Pulmonology. 55(2)
مصطلحات موضوعية: Paediatrics, Biomedical and Clinical Sciences, Cardiovascular Medicine and Haematology, Cystic Fibrosis, Rare Diseases, Clinical Research, Genetics, Lung, Congenital, Good Health and Well Being, Adolescent, Base Sequence, Black People, Cystic Fibrosis Transmembrane Conductance Regulator, Dominican Republic, Female, Hispanic or Latino, Humans, Male, Puerto Rico, White People, CFTR variants, health disparities, Latino, whole genome sequencing, Paediatrics and Reproductive Medicine, Respiratory System, Cardiovascular medicine and haematology
وصف الملف: application/pdf
الوصول الحر: https://escholarship.org/uc/item/9r35v9zbTest
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2دورية أكاديمية
المؤلفون: Zeiger, Andrew M., McGarry, Meghan E., Mak, Angel C. Y., Medina, Vivian, Salazar, Sandra, Eng, Celeste, Liu, Amy K., Oh, Sam S., Nuckton, Thomas J., Jain, Deepti, Blackwell, Thomas W., Kang, Hyun Min, Abecasis, Goncalo, Oñate, Leandra Cordero, Seibold, Max A., Burchard, Esteban G., Rodriguez‐santana, Jose
مصطلحات موضوعية: whole genome sequencing, Latino, CFTR variants, health disparities, Pediatrics, Health Sciences
وصف الملف: application/pdf
العلاقة: Zeiger, Andrew M.; McGarry, Meghan E.; Mak, Angel C. Y.; Medina, Vivian; Salazar, Sandra; Eng, Celeste; Liu, Amy K.; Oh, Sam S.; Nuckton, Thomas J.; Jain, Deepti; Blackwell, Thomas W.; Kang, Hyun Min; Abecasis, Goncalo; Oñate, Leandra Cordero; Seibold, Max A.; Burchard, Esteban G.; Rodriguez‐santana, Jose (2020). "Identification of CFTR variants in Latino patients with cystic fibrosis from the Dominican Republic and Puerto Rico." Pediatric Pulmonology 55(2): 533-540.; https://hdl.handle.net/2027.42/153634Test; Pediatric Pulmonology; Wong LJC, Wang J, Zhang YH, et al. Improved detection of CFTR mutations in southern California Hispanic CF patients. Hum Mutat. 2001; 18 ( 4 ): 296 â 307.; Schrijver I, Pique L, Graham S, Pearl M, Cherry A, Kharrazi M. The spectrum of CFTR variants in nonâ White cystic fibrosis patients. J Mol Diagn. 2016; 18 ( 1 ): 39 â 50.; Palomaki GE, FitzSimmons SC, Haddow JE. Clinical sensitivity of prenatal screening for cystic fibrosis via CFTR carrier testing in a United States panethnic population. Genet Med. 2004; 6 ( 5 ): 405 â 414.; Stewart C, Pepper MS. Cystic fibrosis in the African diaspora. Ann Am Thorac Soc. 2017; 14 ( 1 ): 1 â 7.; Morenoâ Estrada A, Gravel S, Zakharia F, et al. Reconstructing the population genetic history of the Caribbean. PLoS Genet. 2013; 9 ( 11 ): e1003925.; Farrell PM, White TB, Ren CL, et al. Diagnosis of cystic fibrosis: consensus guidelines from the Cystic Fibrosis Foundation. J Pediatr. 2017; 181: S4 â S15.e1.; Taliun D, Harris DN, Kessler MD, et al. Sequencing of 53â 831 diverse genomes from the NHLBI TOPMed Program. bioRxiv. 2019; Taliun, Daniel, et al. "Sequencing of 53â 831 diverse genomes from the NHLBI TOPMed Program. BioRxiv. 2019: 563866.; Richards S, Aziz N, Bale S, et al. Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology. Genet Med. 2015; 17 ( 5 ): 405 â 423.; Liu X, White S, Peng B, et al. WGSA: an annotation pipeline for human genome sequencing studies. J Med Genet. 2016; 53 ( 2 ): 111 â 112.; Li H. Aligning sequence reads, clone sequences and assembly contigs with BWAâ MEM. arWiv preprint. 2013; arXiv: 1303. 3997.; Layer RM, Chiang C, Quinlan AR, Hall IM. LUMPY: a probabilistic framework for structural variant discovery. Genome Biol. 2014; 15 ( 6 ): R84.; Loh Pâ R, Danecek P, Palamara PF, et al. Referenceâ based phasing using the haplotype reference consortium panel. Nat Genet. 2016; 48 ( 11 ): 1443 â 1448.; 1000 Genomes Project Consortium. A global reference for human genetic variation. Nature. 2015; 526 ( 7571 ): 68 â 74.; CFTR2@Johns Hopkins. Home page [Internet]. http://cftr2.orgTest/. Updated March 2019.; Landrum MJ, Lee JM, Benson M, et al. ClinVar: public archive of interpretations of clinically relevant variants. Nucleic Acids Res. 2016; 44 ( D1 ): D862 â D868.; Nykamp K, Anderson M, Powers M, et al. Sherloc: a comprehensive refinement of the ACMGâ AMP variant classification criteria. Genet Med. 2017; 19 ( 10 ): 1105 â 1117.; Rentzsch P, Witten D, Cooper GM, Shendure J, Kircher M. CADD: predicting the deleteriousness of variants throughout the human genome. Nucleic Acids Res. 2019; 47 ( D1 ): D886 â D894.; Rogers MF, Shihab HA, Mort M, Cooper DN, Gaunt TR, Campbell C. FATHMMâ XF: accurate prediction of pathogenic point mutations via extended features. Bioinformatics. 2018; 34 ( 3 ): 511 â 513.; Ioannidis NM, Rothstein JH, Pejaver V, et al. REVEL: an ensemble method for predicting the pathogenicity of rare missense variants. Am J Hum Genet. 2016; 99 ( 4 ): 877 â 885.; Li H. A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data. Bioinformatics. 2011; 27 ( 21 ): 2987 â 2993.; Alonso MJ, Heineâ Suñer D, Calvo M, et al. Spectrum of mutations in the CFTR gene in cystic fibrosis patients of Spanish ancestry. Ann Hum Genet. 2007; 71 ( 2 ): 194 â 201.; Sugarman EA, Rohlfs EM, Silverman LM, Allitto BA. CFTR mutation distribution among U.S. Hispanic and African American individuals: evaluation in cystic fibrosis patient and carrier screening populations. Genet Med. 2004; 6 ( 5 ): 392 â 399.; Grebe TA, Seltzer WK, DeMarchi J, et al. Genetic analysis of Hispanic individuals with cystic fibrosis. Am J Hum Genet. 1994; 54 ( 3 ): 443 â 446.; Groman JD, Cutting GR. Variant cystic fibrosis phenotypes in the absence of CFTR mutations. N Engl J Med. 2002; 347 ( 6 ): 401 â 407.; Mekus F, Ballmann M, Bronsveld I, et al. Cysticâ fibrosisâ like disease unrelated to the cystic fibrosis transmembrane conductance regulator. Hum Genet. 1998; 102 ( 5 ): 582 â 586.; Agrawal PB, Wang R, Li HL, et al. The epithelial sodium channel is a modifier of the longâ term nonprogressive phenotype associated with F508del CFTR mutations. Am J Respir Cell Mol Biol. 2017; 57 ( 6 ): 711 â 720.; Committee on Genetics. Committee opinion no. 691: carrier screening for genetic conditions. Obstet Gynecol. 2017; 129 ( 3 ): e41 â e55.; Leung DH, Heltshe SL, Borowitz D, et al. Effects of diagnosis by newborn screening for cystic fibrosis on weight and length in the first year of life. JAMA Pediatrics. 2017; 171 ( 6 ): 546.; Kharrazi M, Yang J, Bishop T, et al. Newborn screening for cystic fibrosis in California. Pediatrics. 2015; 136 ( 6 ): 1062 â 1072.; Alper M, Wong LJC, Young S, et al. Identification of novel and rare mutations in California Hispanic and African American cystic fibrosis patients. Hum Mutat. 2004; 24 ( 4 ): 353.; De Boeck K, Amaral MD. Progress in therapies for cystic fibrosis. Lancet Respir Med. 2016; 4 ( 8 ): 662 â 674.; McGarry ME, Ly NP. Unequal access to CFTR modulators in Hispanics. Pediatr Pulm. 2017; 52: S396 â 297.; McGarry ME, McColley SA. Minorities are underrepresented in clinical trials of pharmaceutical agents for cystic fibrosis. Ann Am Thorac Soc. 2016; 13 ( 10 ): AnnalsATS.201603â 192BC.; Raraigh KS, Han ST, Davis E, et al. Functional assays are essential for interpretation of missense variants associated with variable expressivity. Am J Hum Genet. 2018; 102 ( 6 ): 1062 â 1077.; Lim RM, Silver AJ, Silver MJ, et al. Targeted mutation screening panels expose systematic population bias in detection of cystic fibrosis risk. Genet Med. 2016; 18 ( 2 ): 174 â 179.; Marson FAL, Bertuzzo CS, Ribeiro JD. Classification of CFTR mutation classes. Lancet Respir Med. 2016; 4 ( 8 ): 37.; Li H, Handsaker B, Wysoker A, et al. The sequence Alignment/Map format and SAMtools. Bioinformatics. 2009; 25 ( 16 ): 2078 â 2079.; Abyzov A, Urban AE, Snyder M, Gerstein M. CNVnator: an approach to discover, genotype, and characterize typical and atypical CNVs from family and population genome sequencing. Genome Res. 2011; 21 ( 6 ): 974 â 984.; Cystic Fibrosis Foundation. Cystic fibrosis Foundation Patient Registry, 2017 Annual Data Report to the Center Directors. Bethesda, MD: Cystic Fibrosis Foundation; 2017.; McGarry ME, Neuhaus JM, Nielson DW, Burchard E, Ly NP. Pulmonary function disparities exist and persist in Hispanic patients with cystic fibrosis: a longitudinal analysis. Pediatr Pulmonol. 2017; 52 ( 12 ): 1550 â 1557.; Rho J, Ahn C, Gao A, Sawicki GS, Keller A, Jain R. Disparities in mortality of Hispanic patients with cystic fibrosis in the United States. A national and regional cohort study. Am J Respir Crit Care Med. 2018; 198 ( 8 ): 1055 â 1063.; Watts KD, Layne B, Harris A, McColley SA. Hispanic infants with cystic fibrosis show low CFTR mutation detection rates in the Illinois newborn screening program. J Genet Couns. 2012; 21 ( 5 ): 671 â 675.
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3دورية أكاديمية
المؤلفون: Zeiger, Andrew M., McGarry, Meghan E., Mak, Angel C. Y., Medina, Vivian, Salazar, Sandra, Eng, Celeste, Liu, Amy K., Oh, Sam S., Nuckton, Thomas J., Jain, Deepti, Blackwell, Thomas W., Kang, Hyun Min, Abecasis, Goncalo, Oñate, Leandra Cordero, Seibold, Max A., Burchard, Esteban G., Rodriguez‐Santana, Jose
المساهمون: National Institute of Environmental Health Sciences, Cystic Fibrosis Foundation Therapeutics, National Institute on Minority Health and Health Disparities, National Heart, Lung, and Blood Institute
المصدر: Pediatric Pulmonology ; volume 55, issue 2, page 533-540 ; ISSN 8755-6863 1099-0496