المؤلفون: Abdennur, Nezar, Goloborodko, Anton, Imakaev, Maxim, Kerpedjiev, Peter, Fudenberg, Geoffrey, Oullette, Scott, Lee, Soohyun, Strobelt, Hendrik, Gehlenborg, Nils, Mirny, Leonid A.

مصطلحات موضوعية: bioinformatics, genomics, Hi-C, sparse, matrix, format, Python, out-of-core

العلاقة: https://github.com/open2c/cooler/tree/v0.10.1Test; https://dx.doi.org/10.5281/zenodo.597976Test

الإتاحة: https://doi.org/10.5281/zenodo.1200145110.5281/zenodo.597976Test

المؤلفون: Scelfo, Andrea, Barra, Viviana, Abdennur, Nezar, Spracklin, George, Busato, Florence, Salinas-Luypaert, Catalina, Bonaiti, Elena, Velasco, Guillaume, Bonhomme, Frédéric, Chipont, Anna, Tijhuis, Andréa, Spierings, Diana C.J., Guérin, Coralie, Arimondo, Paola B, Francastel, Claire, Foijer, Floris, Tost, Jӧrg, Mirny, Leonid, Fachinetti, Daniele

المساهمون: Biologie Cellulaire et Cancer, Institut Curie Paris -Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS), Università degli studi di Palermo - University of Palermo, University of Massachusetts Medical School Worcester (UMASS), University of Massachusetts System (UMASS), Massachusetts Institute of Technology (MIT), Centre National de Recherche en Génomique Humaine (CNRGH), Institut de Biologie François JACOB (JACOB), Direction de Recherche Fondamentale (CEA) (DRF (CEA)), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Direction de Recherche Fondamentale (CEA) (DRF (CEA)), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA), Centre épigénétique et destin cellulaire (EDC), Centre National de la Recherche Scientifique (CNRS)-Université Paris Cité (UPCité), Chimie biologique épigénétique - Epigenetic Chemical Biology (EpiCBio), Institut Pasteur Paris (IP)-Institut de Chimie - CNRS Chimie (INC-CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université Paris Cité (UPCité), Institut Curie Paris, University of Groningen Groningen, Université Paris Cité (UPCité), Institut National de la Santé et de la Recherche Médicale (INSERM), D. Fachinetti receives salary support from the Centre National de la Recherche Scientifique and has received support for this project by Centre National de la Recherche Scientifique, Institut Curie, and Fondation ARC pour la recherche sur le cancer “ARC labellisation program 2019”. A. Scelfo was supported by AIRC and from the European Union’s Horizon 2020 research and innovation program under the Marie Skłodowska-Curie grant agreement No. 800924., We thank all the members of the Daniele Fachinetti team for the discussion and Edith Pfister (UMass Chan Medical School, Worcester, MA, USA) for editing the manuscript. We thank Hélöise Muller from Ines Drinnenberg’s laboratory (Institut Curie, Paris, France) for advice and sharing reagents. We also acknowledge the Flow Cytometry Core Facility and the Cell and Tissue Imaging Facility (member of the French National Research Infrastructure France-BioImaging ANR10-INBS-04) of the Institut Curie and the DIMONEHEALT2019 equipment grant (project EpiK to Paola Arimondo).

المصدر: ISSN: 0021-9525.

مصطلحات موضوعية: [CHIM]Chemical Sciences

العلاقة: info:eu-repo/semantics/altIdentifier/pmid/38376465; pasteur-04472433; https://pasteur.hal.science/pasteur-04472433Test; https://pasteur.hal.science/pasteur-04472433/documentTest; https://pasteur.hal.science/pasteur-04472433/file/jcb_202307026.pdfTest; PUBMED: 38376465; PUBMEDCENTRAL: PMC10876481

الإتاحة: https://doi.org/10.1083/jcb.202307026Test
https://pasteur.hal.science/pasteur-04472433Test
https://pasteur.hal.science/pasteur-04472433/documentTest
https://pasteur.hal.science/pasteur-04472433/file/jcb_202307026.pdfTest

المؤلفون: Hildebrand, Erica M., Polovnikov, Kirill, Dekker, Bastiaan, Liu, Yu, Lafontaine, Denis L., Fox, A. Nicole, Li, Ying, Venev, Sergey V., Mirny, Leonid A., Dekker, Job

المصدر: Molecular Cell ; volume 84, issue 8, page 1422-1441.e14 ; ISSN 1097-2765

مصطلحات موضوعية: Cell Biology, Molecular Biology

الإتاحة: https://doi.org/10.1016/j.molcel.2024.02.025Test
https://api.elsevier.com/content/article/PII:S1097276524001448?httpAccept=text/xmlTest
https://api.elsevier.com/content/article/PII:S1097276524001448?httpAccept=text/plainTest

المؤلفون: Finn, Elizabeth, Pegoraro, Gianluca, Brandão, Hugo, Valton, Anne-Laure, Oomen, Marlies, Dekker, Job, Mirny, Leonid, Misteli, Tom

المساهمون: Institut Jacques Monod (IJM (UMR_7592)), Université Paris Diderot - Paris 7 (UPD7)-Centre National de la Recherche Scientifique (CNRS), University of Massachusetts Medical School Worcester (UMASS), University of Massachusetts System (UMASS), Department of Physics MIT Cambridge, Massachusetts Institute of Technology (MIT), National Cancer Institute Bethesda (NCI-NIH), National Institutes of Health Bethesda, MD, USA (NIH)

المصدر: https://hal.inrae.fr/hal-04641845Test ; 2024.

مصطلحات موضوعية: [SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Genomics [q-bio.GN]

العلاقة: hal-04641845; https://hal.inrae.fr/hal-04641845Test; https://hal.inrae.fr/hal-04641845/documentTest; https://hal.inrae.fr/hal-04641845/file/171801v2.full.pdfTest; BIORXIV: 171801

الإتاحة: https://doi.org/10.1101/171801Test
https://hal.inrae.fr/hal-04641845Test
https://hal.inrae.fr/hal-04641845/documentTest
https://hal.inrae.fr/hal-04641845/file/171801v2.full.pdfTest

المؤلفون: Nora, Elphège P, Caccianini, Laura, Fudenberg, Geoffrey, So, Kevin, Kameswaran, Vasumathi, Nagle, Abigail, Uebersohn, Alec, Hajj, Bassam, Saux, Agnès Le, Coulon, Antoine, Mirny, Leonid A, Pollard, Katherine S, Dahan, Maxime, Bruneau, Benoit G

المصدر: Nature communications. 11(1)

مصطلحات موضوعية: Cell Line, Chromosomes, Mammalian, Chromatin, Animals, Mice, Drosophila, Cell Cycle Proteins, Chromosomal Proteins, Non-Histone, Binding Sites, Amino Acid Motifs, Protein Binding, Structure-Activity Relationship, Mutation, Cricetinae, Nucleotide Motifs, CCCTC-Binding Factor

الوصول الحر: https://escholarship.org/uc/item/4sf4c6mkTest

المؤلفون: Abdennur, Nezar, Goloborodko, Anton, Imakaev, Maxim, Kerpedjiev, Peter, Fudenberg, Geoffrey, Oullette, Scott, Lee, Soohyun, Strobelt, Hendrik, Gehlenborg, Nils, Mirny, Leonid A.

مصطلحات موضوعية: bioinformatics, genomics, Hi-C, sparse, matrix, format, Python, out-of-core

العلاقة: https://github.com/open2c/cooler/tree/v0.9.2Test; https://dx.doi.org/10.5281/zenodo.597976Test

الإتاحة: https://doi.org/10.5281/zenodo.799267910.5281/zenodo.597976Test
https://zenodo.org/record/7992679Test

المؤلفون: Liu, Siyu, Miné-Hattab, Judith, Villemeur, Marie, Guérois, Raphaël, Dahl Pinholt, Henrik, Mirny, Leonid, Taddei, Angela

المساهمون: Dynamique du noyau Institut Curie, Institut Curie Paris -Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS), Institut de Biologie Intégrative de la Cellule (I2BC), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS), Department of Physics MIT Cambridge, Massachusetts Institute of Technology (MIT), Massachusetts Institute of Technology, Cambridge, Massachusetts, USA. (MIT), ANR-10-IDEX-0001,PSL,Paris Sciences et Lettres(2010)

المصدر: ISSN: 1545-9993.

مصطلحات موضوعية: Rad51 Presynaptic filament, Live microscopy, Budding Yeast, Homologous recombination HR, [SDV]Life Sciences [q-bio]

العلاقة: hal-04268858; https://hal.science/hal-04268858Test; https://hal.science/hal-04268858/documentTest; https://hal.science/hal-04268858/file/Liu%20et%20al%20AUTHOR%20versionOp.pdfTest

الإتاحة: https://doi.org/10.1038/s41594-023-01065-wTest
https://hal.science/hal-04268858Test
https://hal.science/hal-04268858/documentTest
https://hal.science/hal-04268858/file/Liu%20et%20al%20AUTHOR%20versionOp.pdfTest

المؤلفون: Spracklin, George, Abdennur, Nezar, Imakaev, Maxim, Chowdhury, Neil, Pradhan, Sriharsa, Mirny, Leonid A, Dekker, Job

المساهمون: Program in Bioinformatics and Integrative Biology, Systems Biology

المصدر: Nature structural & molecular biology ; 30 ; 1 ; 38 ; 51 ; United States

مصطلحات موضوعية: Biophysics, Computational biology and bioinformatics, Epigenomics, Nuclear organization, Systems biology

العلاقة: Nature Structural & Molecular Biology; https://doi.org/10.1038/s41594-022-00892-7Test; Spracklin G, Abdennur N, Imakaev M, Chowdhury N, Pradhan S, Mirny LA, Dekker J. Diverse silent chromatin states modulate genome compartmentalization and loop extrusion barriers. Nat Struct Mol Biol. 2023 Jan;30(1):38-51. doi:10.1038/s41594-022-00892-7. Epub 2022 Dec 22. PMID: 36550219; PMCID: PMC9851908.; http://hdl.handle.net/20.500.14038/52871Test

الإتاحة: https://doi.org/10.1038/s41594-022-00892-7Test
https://doi.org/20.500.14038/52871Test
https://hdl.handle.net/20.500.14038/52871Test

المؤلفون: Gabriele, Michele, Brandão, Hugo B, Grosse-Holz, Simon, Jha, Asmita, Dailey, Gina M, Cattoglio, Claudia, Hsieh, Tsung-Han S, Mirny, Leonid, Zechner, Christoph, Hansen, Anders S

المساهمون: Massachusetts Institute of Technology. Department of Biological Engineering

المصدر: PMC

وصف الملف: application/pdf

العلاقة: Science; https://hdl.handle.net/1721.1/147831Test; Gabriele, Michele, Brandão, Hugo B, Grosse-Holz, Simon, Jha, Asmita, Dailey, Gina M et al. 2022. "Dynamics of CTCF- and cohesin-mediated chromatin looping revealed by live-cell imaging." Science, 376 (6592).

الإتاحة: https://hdl.handle.net/1721.1/147831Test

المؤلفون: Dequeker, Bart JH, Scherr, Matthias J, Brandão, Hugo B, Gassler, Johanna, Powell, Sean, Gaspar, Imre, Flyamer, Ilya M, Lalic, Aleksandar, Tang, Wen, Stocsits, Roman, Davidson, Iain F, Peters, Jan-Michael, Duderstadt, Karl E, Mirny, Leonid A, Tachibana, Kikuë

المساهمون: Harvard-MIT Program in Health Sciences and Technology

المصدر: Nature

وصف الملف: application/pdf

العلاقة: Nature; https://hdl.handle.net/1721.1/150493Test; Dequeker, Bart JH, Scherr, Matthias J, Brandão, Hugo B, Gassler, Johanna, Powell, Sean et al. 2022. "MCM complexes are barriers that restrict cohesin-mediated loop extrusion." Nature, 606 (7912).

الإتاحة: https://hdl.handle.net/1721.1/150493Test