المؤلفون: McSwiggen, David Trombley, Hansen, Anders S, Teves, Sheila S, Marie-Nelly, Hervé, Hao, Yvonne, Heckert, Alec Basil, Umemoto, Kayla K, Dugast-Darzacq, Claire, Tjian, Robert, Darzacq, Xavier

مصطلحات موضوعية: Cell Line, Cell Nucleus, Animals, Humans, Simplexvirus, DNA-Binding Proteins, Nuclear Proteins, DNA, Viral, Virus Replication, Protein Binding, RNA Polymerase II, chromatin function, chromosomes, gene expression, human, molecular biophysics, nuclear organization, phase separation, single particle tracking, structural biology, transcription factors, virus, DNA, Viral, Biochemistry and Cell Biology

وصف الملف: application/pdf

الوصول الحر: https://escholarship.org/uc/item/63c7r454Test

المؤلفون: Baudry, Lyam, Guiglielmoni, Nadège, Marie-Nelly, Hervé, Cormier, Alexandre, Marbouty, Martial, Avia, Komlan, Mie, Yann Loe, Godfroy, Olivier, Sterck, Lieven, Cock, J. Mark, Zimmer, Christophe, Coelho, Susana M., Koszul, Romain

مصطلحات موضوعية: Genetics, FOS Biological sciences, Evolutionary Biology, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, Infectious Diseases, FOS Health sciences, Plant Biology

الإتاحة: https://doi.org/10.6084/m9.figshare.c.5028611Test
https://springernature.figshare.com/collections/instaGRAAL_chromosome-level_quality_scaffolding_of_genomes_using_a_proximity_ligation-based_scaffolder/5028611Test

المؤلفون: Baudry, Lyam, Marbouty, Martial, Marie-Nelly, Hervé, Cormier, Alexandre, Guiglielmoni, Nadège, Avia, Komlan, Mie, Yann Loe, Godfroy, Olivier, Sterck, Lieven, Cock, J. Mark, Zimmer, Christophe, Coelho, Susana M., Koszul, Romain

المساهمون: Régulation spatiale des Génomes - Spatial Regulation of Genomes, Institut Pasteur Paris (IP)-Centre National de la Recherche Scientifique (CNRS), Centre de Bioinformatique, Biostatistique et Biologie Intégrative (C3BI), Collège Doctoral, Sorbonne Université (SU), Laboratoire de Biologie Intégrative des Modèles Marins (LBI2M), Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Station biologique de Roscoff = Roscoff Marine Station (SBR), Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS), Université libre de Bruxelles (ULB), Imagerie et Modélisation - Imaging and Modeling, This research was supported by funding to R.K. and S.M.C. from the European Research Council under the Horizon 2020 Program (ERC grant agreements 260822 and 638240, respectively) and from Agence Nationale pour la Recherche (JPI-EC-AMR STARCS ANR-16-JPEC-0003-05) to R.K. This project has received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement No 764840, ANR-16-JPEC-0003,STARCS,Selection and Transmission of Antimicrobial Resistance in Complex Systems(2016), European Project: 260822,EC:FP7:ERC,ERC-2010-StG_20091118,DICIG(2011), European Project: 638240,H2020,ERC-2014-STG,SEXSEA(2015), European Project: 764840,H2020-EU.1.3. - EXCELLENT SCIENCE - Marie Skłodowska-Curie Actions / H2020-EU.1.3.1. - Fostering new skills by means of excellent initial training of researchers,10.3030/764840,IGNITE(2018)

المصدر: BioRxiv ; https://hal.inrae.fr/hal-02947625Test ; 2021

مصطلحات موضوعية: Ectocarpus, Hi-C scaffolding, Hi-C genome assembly, MCMC, GPU, parallel computing, Desmarestia herbacea, [SDV]Life Sciences [q-bio]

العلاقة: info:eu-repo/grantAgreement/EC/FP7/260822/EU/Dynamic Interplay between Eukaryotic Chromosomes: Impact on Genome Stability/DICIG; info:eu-repo/grantAgreement//638240/EU/Origin and evolution of the sexes and reproductive systems: novel insights from a distant eukaryotic lineage/SEXSEA; info:eu-repo/grantAgreement//764840/EU/Comparative genomics of non-model invertebrates/IGNITE; hal-02947625; https://hal.inrae.fr/hal-02947625Test; https://hal.inrae.fr/hal-02947625/documentTest; https://hal.inrae.fr/hal-02947625/file/2019.12.22.882084v1.full.pdfTest; BIORXIV: 2019.12.22.882084; PRODINRA: 494069

الإتاحة: https://doi.org/10.1101/2019.12.22.882084Test
https://hal.inrae.fr/hal-02947625Test
https://hal.inrae.fr/hal-02947625/documentTest
https://hal.inrae.fr/hal-02947625/file/2019.12.22.882084v1.full.pdfTest

المؤلفون: Baudry, Lyam, Marbouty, Martial, Marie-Nelly, Hervé, Cormier, Alexandre, Guiglielmoni, Nadège, Avia, Komlan, Mie, Yann Loe, Godfroy, Olivier, Sterck, Lieven, Cock, J. Mark, Zimmer, Christophe, Coelho, Susana M., Koszul, Romain

المساهمون: Régulation spatiale des Génomes - Spatial Regulation of Genomes, Institut Pasteur Paris -Centre National de la Recherche Scientifique (CNRS), Centre de Bioinformatique, Biostatistique et Biologie Intégrative (C3BI), Collège doctoral Sorbonne universités, Sorbonne Université (SU), Laboratoire de Biologie Intégrative des Modèles Marins (LBI2M), Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Station biologique de Roscoff (SBR), Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS), Université libre de Bruxelles (ULB), Imagerie et Modélisation - Imaging and Modeling, This research was supported by funding to R.K. and S.M.C. from the European Research Council under the Horizon 2020 Program (ERC grant agreements 260822 and 638240, respectively) and from Agence Nationale pour la Recherche (JPI-EC-AMR STARCS ANR-16-JPEC-0003-05) to R.K. This project has received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement No 764840, ANR-16-JPEC-0003,STARCS,Selection and Transmission of Antimicrobial Resistance in Complex Systems(2016), European Project: 260822,EC:FP7:ERC,ERC-2010-StG_20091118,DICIG(2011), European Project: 638240,H2020,ERC-2014-STG,SEXSEA(2015), European Project: 764840,IGNITE

المصدر: BioRxiv ; https://hal.inrae.fr/hal-02947625Test ; 2020

مصطلحات موضوعية: Ectocarpus, Hi-C scaffolding, Hi-C genome assembly, MCMC, GPU, parallel computing, Desmarestia herbacea, [SDV]Life Sciences [q-bio]

العلاقة: info:eu-repo/grantAgreement/EC/FP7/260822/EU/Dynamic Interplay between Eukaryotic Chromosomes: Impact on Genome Stability/DICIG; info:eu-repo/grantAgreement//638240/EU/Origin and evolution of the sexes and reproductive systems: novel insights from a distant eukaryotic lineage/SEXSEA; info:eu-repo/grantAgreement//764840/EU/IGNITE - Comparative genomics of non-model invertebrates Programme: H2020-EU.1.3.1. Record Number: 211660/IGNITE; hal-02947625; https://hal.inrae.fr/hal-02947625Test; BIORXIV: 2019.12.22.882084; PRODINRA: 494069

الإتاحة: https://doi.org/10.1101/2019.12.22.882084Test
https://hal.inrae.fr/hal-02947625Test

المؤلفون: McSwiggen, David T, Hansen, Anders S., Marie-Nelly, Hervé, Teves, Sheila, Heckert, Alec B, Dugast-Darzacq, Claire, Hao, Yvonne, Umemoto, Kayla K., Tjian, Robert, Darzacq, Xavier

العلاقة: https://zenodo.org/record/1313872Test; https://doi.org/10.5281/zenodo.1313872Test; oai:zenodo.org:1313872

الإتاحة: https://doi.org/10.5281/zenodo.1313872Test
https://doi.org/10.5281/zenodo.1313871Test
https://zenodo.org/record/1313872Test

المؤلفون: Xie, Liangqi, Torigoe, Sharon E, Xiao, Jifang, Mai, Daniel H, Li, Li, Davis, Fred P, Dong, Peng, Marie-Nelly, Herve, Grimm, Jonathan, Lavis, Luke, Darzacq, Xavier, Cattoglio, Claudia, Liu, Zhe, Tjian, Robert

المصدر: Genes & Development, vol 31, iss 17

مصطلحات موضوعية: Biochemistry and Cell Biology, Biological Sciences, Human Genome, Genetics, Stem Cell Research, Underpinning research, 1.1 Normal biological development and functioning, Generic health relevance, Animals, Binding Sites, Chromatin, Embryonic Stem Cells, Enhancer Elements, Genetic, Gene Expression Regulation, Kruppel-Like Factor 4, Kruppel-Like Transcription Factors, Mice, Octamer Transcription Factor-3, Pluripotent Stem Cells, Protein Binding, Receptors, Estrogen, SOXB1 Transcription Factors, STAT3 Transcription Factor, Transcription Factors, dynamics, enhancer, CRISPR, naive pluripotency

الوقت: 1795 - 1808

وصف الملف: application/pdf

العلاقة: qt2zr9h35g; https://escholarship.org/uc/item/2zr9h35gTest

الإتاحة: https://escholarship.org/uc/item/2zr9h35gTest

المؤلفون: Flot, Jean-François, Marie-Nelly, Hervé, Koszul, Romain

المصدر: FEBS letters, 589 (20

مصطلحات موضوعية: Evolution des espèces, Biologie moléculaire, Océanographie biologique, Systématique des espèces [zoologie], Génétique, cytogénétique

وصف الملف: 1 full-text file(s): application/pdf

العلاقة: uri/info:doi/10.1016/j.febslet.2015.04.034; uri/info:pmid/25935414; uri/info:scp/84943361976; https://dipot.ulb.ac.be/dspace/bitstream/2013/309496/1/doi_293140.pdfTest; http://hdl.handle.net/2013/ULB-DIPOT:oai:dipot.ulb.ac.be:2013/309496Test

الإتاحة: http://hdl.handle.net/2013/ULB-DIPOT:oai:dipot.ulb.ac.be:2013/309496Test

المؤلفون: Marie-Nelly, Hervé, Marbouty, Martial, Cournac, Axel, Liti, Gianni, Fischer, Gilles, Zimmer, Christophe, Koszul, Romain

المساهمون: Régulation spatiale des Génomes - Spatial Regulation of Genomes, Institut Pasteur Paris (IP)-Centre National de la Recherche Scientifique (CNRS), Imagerie et Modélisation, Institut de Recherche sur le Cancer et le Vieillissement (IRCAN), Université Nice Sophia Antipolis (1965 - 2019) (UNS)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-Université Côte d'Azur (UniCA), Biologie Computationnelle et Quantitative = Laboratory of Computational and Quantitative Biology (LCQB), Université Pierre et Marie Curie - Paris 6 (UPMC)-Institut de Biologie Paris Seine (IBPS), Université Pierre et Marie Curie - Paris 6 (UPMC)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS), R.K. from the European Research Council under the 7th Framework Program (FP7/2007-2013)/ERC grant agreement (260822) and by Agence Nationale de la Recherche (ANR-09-PIRI-0024) to C.Z. and R.K. H.M-N. is supported by a fellowship from Fondation pour la Recherche Médicale (FRM). MM is the recipient of an Association pour la Recherche sur le Cancer fellowship (20100600373) and C.Z. is also supported by a FRM grant (DEQ20100318291)., ANR-09-PIRI-0024,Chromodyn(2009), European Project: 260822,EC:FP7:ERC,ERC-2010-StG_20091118,DICIG(2011)

المصدر: ISSN: 1367-4803.

مصطلحات موضوعية: MESH: Centromere/genetics, MESH: Consensus Sequence, MESH: DNA, Ribosomal/genetics, MESH: Genetic Loci/genetics, MESH: Genome, Fungal/genetics, MESH: Genomics/methods, MESH: Molecular Sequence Annotation/methods, MESH: Saccharomycetales/genetics, MESH: Synteny, [SDV]Life Sciences [q-bio]

العلاقة: info:eu-repo/semantics/altIdentifier/pmid/24711652; info:eu-repo/grantAgreement/EC/FP7/260822/EU/Dynamic Interplay between Eukaryotic Chromosomes: Impact on Genome Stability/DICIG; pasteur-01488132; https://pasteur.hal.science/pasteur-01488132Test; https://pasteur.hal.science/pasteur-01488132/documentTest; https://pasteur.hal.science/pasteur-01488132/fileTest/Marie-Nelly%20et%20al%202014%20bioinformatics.pdf; PUBMED: 24711652

الإتاحة: https://doi.org/10.1093/bioinformatics/btu162Test
https://pasteur.hal.science/pasteur-01488132Test
https://pasteur.hal.science/pasteur-01488132/documentTest
https://pasteur.hal.science/pasteur-01488132/fileTest/Marie-Nelly%20et%20al%202014%20bioinformatics.pdf

المؤلفون: Marbouty, Martial, Cournac, Axel, Flot, Jean-François, Marie-Nelly, Hervé, Mozziconacci, Julien, Koszul, Romain

المصدر: eLife, 3

مصطلحات موضوعية: Biologie moléculaire, Génétique, cytogénétique, Bacteria -- genetics, Chromosomes, Bacterial -- genetics, Fungal -- genetics, Genome, Bacterial, Image Processing, Computer-Assisted, Metagenomics -- methods, Plasmids -- metabolism, Segmental Duplications, Genomic, Yeasts -- genetics, B. subtilis, E. coli, Hi-C, S. cerevisiae, evolutionary biology, genes, genome assembly, genomics, meta Hi-C, meta3C, metagenomics, plasmid F

وصف الملف: 1 full-text file(s): application/pdf

العلاقة: uri/info:doi/10.7554/eLife.03318; uri/info:pmid/25517076; uri/info:pmcid/PMC4381813; https://dipot.ulb.ac.be/dspace/bitstream/2013/226137/4/doi_209764.pdfTest; http://hdl.handle.net/2013/ULB-DIPOT:oai:dipot.ulb.ac.be:2013/226137Test

الإتاحة: http://hdl.handle.net/2013/ULB-DIPOT:oai:dipot.ulb.ac.be:2013/226137Test

المؤلفون: Marie-Nelly, Hervé, Marbouty, Martial, Cournac, Axel, Flot, Jean-François, Liti, Gianni, Parodi, Dante Poggi, Syan, Sylvie, Guillén, Nancy, Margeot, Antoine, Zimmer, Christophe, Koszul, Romain

المصدر: Nature communications, 5

مصطلحات موضوعية: Evolution des espèces, Biologie moléculaire, Océanographie biologique, Systématique des espèces [zoologie], Génétique, cytogénétique, Algorithms, Chromosomes, Fungal, Human, Contig Mapping -- methods -- statistics & numerical data, Genome, High-Throughput Nucleotide Sequencing, Humans, Karyotype, Models, Statistical, Saccharomyces cerevisiae -- genetics, Sequence Analysis, DNA, Trichoderma -- genetics

وصف الملف: 1 full-text file(s): application/pdf

العلاقة: uri/info:doi/10.1038/ncomms6695; uri/info:pii/ncomms6695; uri/info:pmid/25517223; uri/info:pmcid/PMC4284522; https://dipot.ulb.ac.be/dspace/bitstream/2013/226136/4/doi_209763.pdfTest; http://hdl.handle.net/2013/ULB-DIPOT:oai:dipot.ulb.ac.be:2013/226136Test

الإتاحة: http://hdl.handle.net/2013/ULB-DIPOT:oai:dipot.ulb.ac.be:2013/226136Test