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1دورية أكاديمية
المؤلفون: Lin, Weiwei, Mousavi, Fatemeh, Blum, Benjamin C., Heckendorf, Christian F, Moore, Jarrod, Lampl, Noah, McComb, Mark, Kotelnikov, Sergei, Yin, Wenqing, Rabhi, Nabil, Layne, Matthew D., Kozakov, Dima, Chitalia, Vipul C., Emili, Andrew
المصدر: Frontiers in Pharmacology ; volume 15 ; ISSN 1663-9812
مصطلحات موضوعية: Pharmacology (medical), Pharmacology
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2دورية أكاديمية
المؤلفون: Padhorny, Dzmitry, Porter, Kathryn A, Ignatov, Mikhail, Alekseenko, Andrey, Beglov, Dmitri, Kotelnikov, Sergei, Ashizawa, Ryota, Desta, Israel, Alam, Nawsad, Sun, Zhuyezi, Brini, Emiliano, Dill, Ken, Schueler‐Furman, Ora, Vajda, Sandor, Kozakov, Dima
المصدر: Proteins Structure Function and Bioinformatics. 88(8)
مصطلحات موضوعية: Biological Sciences, Bioinformatics and Computational Biology, Amino Acid Sequence, Benchmarking, Binding Sites, Humans, Ligands, Molecular Docking Simulation, Peptides, Protein Binding, Protein Conformation, alpha-Helical, Protein Conformation, beta-Strand, Protein Interaction Domains and Motifs, Protein Interaction Mapping, Protein Multimerization, Proteins, Research Design, Software, Structural Homology, Protein, Thermodynamics, ambiguous templates, docking server, homology modeling, protein-peptide complexes, protein-protein complexes, template selection, Mathematical Sciences, Information and Computing Sciences, Bioinformatics, Biological sciences, Mathematical sciences
وصف الملف: application/pdf
الوصول الحر: https://escholarship.org/uc/item/0z76k7x7Test
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3دورية أكاديمية
المؤلفون: Kotelnikov, Sergei, Alekseenko, Andrey, Liu, Cong, Ignatov, Mikhail, Padhorny, Dzmitry, Brini, Emiliano, Lukin, Mark, Coutsias, Evangelos, Dill, Ken A, Kozakov, Dima
المصدر: Journal of Computer-Aided Molecular Design. 34(2)
مصطلحات موضوعية: Medicinal and Biomolecular Chemistry, Chemical Sciences, Generic health relevance, Amyloid Precursor Protein Secretases, Aspartic Acid Endopeptidases, Binding Sites, Drug Design, Humans, Ligands, Macrocyclic Compounds, Molecular Docking Simulation, Molecular Dynamics Simulation, Monte Carlo Method, Protein Binding, Thermodynamics, BACE-1, D3R, Macrocycles, Protein–ligand docking, Template-based docking, Theoretical and Computational Chemistry, Medicinal & Biomolecular Chemistry, Medicinal and biomolecular chemistry, Theoretical and computational chemistry
وصف الملف: application/pdf
الوصول الحر: https://escholarship.org/uc/item/560933hbTest
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4دورية أكاديمية
المؤلفون: Ignatov, Mikhail, Liu, Cong, Alekseenko, Andrey, Sun, Zhuyezi, Padhorny, Dzmitry, Kotelnikov, Sergei, Kazennov, Andrey, Grebenkin, Ivan, Kholodov, Yaroslav, Kolosvari, Istvan, Perez, Alberto, Dill, Ken, Kozakov, Dima
المصدر: Journal of Computer-Aided Molecular Design. 33(1)
مصطلحات موضوعية: Binding Sites, Cathepsins, Computer-Aided Design, Crystallography, X-Ray, Databases, Protein, Drug Design, Ligands, Molecular Conformation, Molecular Docking Simulation, Molecular Dynamics Simulation, Monte Carlo Method, Protein Binding, Thermodynamics, Cathepsin S, D3R, MD, Manifold, Minimization, Monte Carlo, Medicinal and Biomolecular Chemistry, Theoretical and Computational Chemistry, Medicinal & Biomolecular Chemistry
وصف الملف: application/pdf
الوصول الحر: https://escholarship.org/uc/item/8n5345xxTest
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5دورية أكاديمية
المؤلفون: Lensink, Marc F., Brysbaert, Guillaume, Raouraoua, Nessim, Bates, Paul A., Giulini, Marco, Honorato, Rodrigo V., van Noort, Charlotte, Teixeira, Joao M. C., Bonvin, Alexandre M. J. J., Kong, Ren, Shi, Hang, Lu, Xufeng, Chang, Shan, Liu, Jian, Guo, Zhiye, Chen, Xiao, Morehead, Alex, Roy, Raj S., Wu, Tianqi, Giri, Nabin, Quadir, Farhan, Chen, Chen, Cheng, Jianlin, Del Carpio, Carlos A., Ichiishi, Eichiro, Rodriguez-Lumbreras, Luis A., Fernandez-Recio, Juan, Harmalkar, Ameya, Chu, Lee-Shin, Canner, Sam, Smanta, Rituparna, Gray, Jeffrey J., Li, Hao, Lin, Peicong, He, Jiahua, Tao, Huanyu, Huang, Sheng-You, Roel-Touris, Jorge, Jimenez-Garcia, Brian, Christoffer, Charles W., Jain, Anika J., Kagaya, Yuki, Kannan, Harini, Nakamura, Tsukasa, Terashi, Genki, Verburgt, Jacob C., Zhang, Yuanyuan, Zhang, Zicong, Fujuta, Hayato, Sekijima, Masakazu, Kihara, Daisuke, Khan, Omeir, Kotelnikov, Sergei, Ghani, Usman, Padhorny, Dzmitry, Beglov, Dmitri, Vajda, Sandor, Kozakov, Dima, Negi, Surendra S., Ricciardelli, Tiziana, Barradas-Bautista, Didier, Cao, Zhen, Chawla, Mohit, Cavallo, Luigi, Oliva, Romina, Yin, Rui, Cheung, Melyssa, Guest, Johnathan D., Lee, Jessica, Pierce, Brian G., Shor, Ben, Cohen, Tomer, Halfon, Matan, Schneidman-Duhovny, Dina, Zhu, Shaowen, Yin, Rujie, Sun, Yuanfei, Shen, Yang, Maszota-Zieleniak, Martyna, Bojarski, Krzysztof K., Lubecka, Emilia A., Marcisz, Mateusz, Danielsson, Annemarie, Dziadek, Lukasz, Gaardlos, Margrethe, Gieldon, Artur, Liwo, Adam, Samsonov, Sergey A., Slusarz, Rafal, Zieba, Karolina, Sieradzan, Adam K., Czaplewski, Cezary, Kobayashi, Shinpei, Miyakawa, Yuta, Kiyota, Yasuomi, Takeda-Shitaka, Mayuko, Olechnovič, Kliment, Valančauskas, Lukas, Dapkūnas, Justas, Venclovas, Česlovas, Wallner, Bjorn, Yang, Lin, Hou, Chengyu, He, Xiaodong, Guo, Shuai, Jiang, Shenda, Ma, Xiaoliang, Duan, Rui, Qui, Liming, Xu, Xianjin, Zou, Xiaoqin, Velankar, Sameer, Wodak, Shoshana J.
المصدر: Proteins: structure, function and bioinformatics: Special Issue: CASP15: Critical Assessment of methods for Structure Prediction, 15th round., Hoboken : John Wiley and Sons Inc, 2023, vol. 91, iss. 12, p. 1658-1683. ; ISSN 0887-3585 ; eISSN 1097-0134
مصطلحات موضوعية: AlphaFold, blind prediction, CAPRI, CASP, deep learning, protein assemblies, protein complexes, protein-protein interaction
وصف الملف: application/pdf
العلاقة: https://epublications.vu.lt/object/elaba:181802571/181802571.pdfTest; https://repository.vu.lt/VU:ELABAPDB181802571&prefLang=en_USTest
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6دورية أكاديمية
المؤلفون: Lensink, Marc, Brysbaert, Guillaume, Raouraoua, Nessim, Bates, Paul A., Giulini, Marco, Honorato, Rodrigo V., van Noort, Charlotte, Teixeira, Joao M. C., Bonvin, Alexandre M. J. J., Kong, Ren, Shi, Hang, Lu, Xufeng, Chang, Shan, Liu, Jian, Guo, Zhiye, Chen, Xiao, Morehead, Alex, Roy, Raj S., Wu, Tianqi, Giri, Nabin, Quadir, Farhan, Chen, Chen, Cheng, Jianlin, del Carpio, Carlos A., Ichiishi, Eichiro, Rodriguez‐lumbreras, Luis A., Fernandez‐recio, Juan, Harmalkar, Ameya, Chu, Lee‐shin, Canner, Sam, Smanta, Rituparna, Gray, Jeffrey J., Li, Hao, Lin, Peicong, He, Jiahua, Tao, Huanyu, Huang, Sheng‐you, Roel‐touris, Jorge, Jimenez‐garcia, Brian, Christoffer, Charles W., Jain, Anika J., Kagaya, Yuki, Kannan, Harini, Nakamura, Tsukasa, Terashi, Genki, Verburgt, Jacob C., Zhang, Yuanyuan, Zhang, Zicong, Fujuta, Hayato, Sekijima, Masakazu, Kihara, Daisuke, Khan, Omeir, Kotelnikov, Sergei, Ghani, Usman, Padhorny, Dzmitry, Beglov, Dmitri, Vajda, Sandor, Kozakov, Dima, Negi, Surendra S., Ricciardelli, Tiziana, Barradas‐bautista, Didier, Cao, Zhen, Chawla, Mohit, Cavallo, Luigi, Oliva, Romina, Yin, Rui, Cheung, Melyssa, Guest, Johnathan D., Lee, Jessica, Pierce, Brian G., Shor, Ben, Cohen, Tomer, Halfon, Matan, Schneidman‐duhovny, Dina, Zhu, Shaowen, Yin, Rujie, Sun, Yuanfei, Shen, Yang, Maszota‐zieleniak, Martyna, Bojarski, Krzysztof K., Lubecka, Emilia A., Marcisz, Mateusz, Danielsson, Annemarie, Dziadek, Lukasz, Gaardlos, Margrethe, Gieldon, Artur, Liwo, Adam, Samsonov, Sergey A., Slusarz, Rafal, Zieba, Karolina, Sieradzan, Adam K., Czaplewski, Cezary, Kobayashi, Shinpei, Miyakawa, Yuta, Kiyota, Yasuomi, Takeda‐shitaka, Mayuko, Olechnovic, Kliment, Valancauskas, Lukas, Dapkunas, Justas, Venclovas, Ceslovas, Wallner, Bjorn, Yang, Lin, Hou, Chengyu, He, Xiaodong, Guo, Shuai, Jiang, Shenda, Ma, Xiaoliang, Duan, Rui, Qui, Liming, Xu, Xianjin, Zou, Xiaoqin, Velankar, Sameer, Wodak, Shoshana J.
المساهمون: Unité de Glycobiologie Structurale et Fonctionnelle - UMR 8576 (UGSF), Université de Lille-Centre National de la Recherche Scientifique (CNRS), Biomolecular Modelling laboratory London, Cancer Research UK London Research Institute, Bijvoet Center for Biomolecular Research Utrecht, Universiteit Utrecht / Utrecht University Utrecht, Jiangsu University of Technology Changzhou, Department of Electrical Engineering and Computer Science Columbia (EECS), University of Missouri Columbia (Mizzou), University of Missouri System-University of Missouri System, International University of Health and Welfare Hospital (IUHW Hospital), Barcelona Supercomputing Center - Centro Nacional de Supercomputacion (BSC-CNS), Instituto de Ciencias de la Vid y el Vino (ICVV), Universidad de La Rioja (UR)-Consejo Superior de Investigaciones Científicas Spain (CSIC), Johns Hopkins University (JHU), Program in Molecular Biophysics Baltimore, Huazhong University of Science and Technology Wuhan (HUST), Department of Computer Science Purdue, Purdue University West Lafayette, Department of Biological Sciences West Lafayette, Indian Institute of Technology Madras (IIT Madras), Tokyo Institute of Technology Tokyo (TITECH), Boston University Boston (BU), Stony Brook University SUNY (SBU), State University of New York (SUNY), The University of Texas Medical Branch (UTMB), King Abdullah University of Science and Technology Saudi Arabia (KAUST), Università degli Studi di Salerno = University of Salerno (UNISA), Università degli Studi di Napoli “Parthenope” = University of Naples (PARTHENOPE), University of Maryland College Park, University of Maryland System, The Hebrew University of Jerusalem (HUJ), Texas A&M University College Station, Kitasato University, Institute of Biotechnology Vilnius, Life Science Center Vilnius, Vilnius University Vilnius -Vilnius University Vilnius, Linköping University (LIU), The University of Sydney, Harbin Institute of Technology (HIT), University of Missouri System, European Bioinformatics Institute Hinxton (EMBL-EBI), EMBL Heidelberg, VIB-VUB Center for Structural Biology Bruxelles, VIB Belgium, BioExcel Centre of Excellence for ComputationalBiomolecular Research, Cancer Research UK. Grant Number: FC0001003, UK Medical Research Council. Grant Number: FC001003, Marie Skłodowska-Curie. Grant Number: 801342, Government of Catalonia's Agency for Business Competitiveness (ACCIO), National Science Foundation. Grant Numbers: DMS 2054251, DBI2003635, IIS2211598, DBI2146026, MCB1925643, CMMI1825941, IIS1763246, DBI1759934, CCF-1943008, OAC1920103, National Institute of General Medical Sciences. Grant Number: T32 GM132024, NIH/NIGMS. Grant Numbers: R35GM136409, R35GM124952, Research Council of Lithuania. Grant Number: S-MIP-21-25, Wallenberg AI, Autonomous System and Software Program (WASP), Knut and Alice Wallenberg Foundation (KAW), Swedish Research Council, Science Foundation of the National Key Laboratory of Science and Technology, Wellcome Trust. Grant Number: FC001003, Netherlands e-Science Center. Grant Number: 027.020.G13, US National Institutes of Health. Grant Numbers: R01GM146340, R01GM093123, Spanish Ministry of Science. Grant Numbers: 501100011033, AEI/10.13039, PID2019-110167RB-I00, National Institute of Health. Grant Numbers: R35 GM144083, RM1135136, R35GM118078, R01GM140098, R01GM123055, R01GM133840, R35-GM141881, Advanced Research Computing at Hopkins (ARCH) core facility, National Natural Science Foundation of China. Grant Numbers: 32161133002, 62072199, European Molecular Biology Organization (EMBO). Grant Number: ALTF 145-2021
المصدر: ISSN: 0887-3585.
مصطلحات موضوعية: AlphaFold, blind prediction, CAPRI, CASP, deep learning, protein assemblies, protein complexes, protein-protein interaction, [SDV]Life Sciences [q-bio], [CHIM.THEO]Chemical Sciences/Theoretical and/or physical chemistry
العلاقة: hal-04279362; https://hal.univ-lille.fr/hal-04279362Test; https://hal.univ-lille.fr/hal-04279362/documentTest; https://hal.univ-lille.fr/hal-04279362/file/P23.38%20Lensink-capri-casp-2023.pdfTest
الإتاحة: https://doi.org/10.1002/prot.26609Test
https://hal.univ-lille.fr/hal-04279362Test
https://hal.univ-lille.fr/hal-04279362/documentTest
https://hal.univ-lille.fr/hal-04279362/file/P23.38%20Lensink-capri-casp-2023.pdfTest -
7دورية أكاديمية
المؤلفون: Paul, Indranil, Bolzan, Dante, Youssef, Ahmed, Gagnon, Keith A., Hook, Heather, Karemore, Gopal, Oliphant, Michael U. J., Lin, Weiwei, Liu, Qian, Phanse, Sadhna, White, Carl, Padhorny, Dzmitry, Kotelnikov, Sergei, Chen, Christopher S., Hu, Pingzhao, Denis, Gerald V., Kozakov, Dima, Raught, Brian, Siggers, Trevor, Wuchty, Stefan, Muthuswamy, Senthil K., Emili, Andrew
المساهمون: Division of Cancer Prevention, National Cancer Institute
المصدر: Nature Communications ; volume 14, issue 1 ; ISSN 2041-1723
مصطلحات موضوعية: General Physics and Astronomy, General Biochemistry, Genetics and Molecular Biology, General Chemistry, Multidisciplinary
الإتاحة: https://doi.org/10.1038/s41467-023-36122-xTest
https://www.nature.com/articles/s41467-023-36122-x.pdfTest
https://www.nature.com/articles/s41467-023-36122-xTest -
8دورية أكاديمية
المؤلفون: Lensink, Marc F, Brysbaert, Guillaume, Raouraoua, Nessim, Bates, Paul A, Giulini, Marco, Honorato, Rodrigo V, van Noort, Charlotte, Teixeira, Joao M C, Bonvin, Alexandre M J J, Kong, Ren, Shi, Hang, Lu, Xufeng, Chang, Shan, Liu, Jian, Guo, Zhiye, Chen, Xiao, Morehead, Alex, Roy, Raj S, Wu, Tianqi, Giri, Nabin, Quadir, Farhan, Chen, Chen, Cheng, Jianlin, Del Carpio, Carlos A, Ichiishi, Eichiro, Rodriguez-Lumbreras, Luis A, Fernandez-Recio, Juan, Harmalkar, Ameya, Chu, Lee-Shin, Canner, Sam, Smanta, Rituparna, Gray, Jeffrey J, Li, Hao, Lin, Peicong, He, Jiahua, Tao, Huanyu, Huang, Sheng-You, Roel-Touris, Jorge, Jimenez-Garcia, Brian, Christoffer, Charles W, Jain, Anika J, Kagaya, Yuki, Kannan, Harini, Nakamura, Tsukasa, Terashi, Genki, Verburgt, Jacob C, Zhang, Yuanyuan, Zhang, Zicong, Fujuta, Hayato, Sekijima, Masakazu, Kihara, Daisuke, Khan, Omeir, Kotelnikov, Sergei, Ghani, Usman, Padhorny, Dzmitry, Beglov, Dmitri, Vajda, Sandor, Kozakov, Dima, Negi, Surendra S, Ricciardelli, Tiziana, Barradas-Bautista, Didier, Cao, Zhen, Chawla, Mohit, Cavallo, Luigi, Oliva, Romina, Yin, Rujie, Cheung, Melyssa, Guest, Johnathan D, Lee, Jessica, Pierce, Brian G, Shor, Ben, Cohen, Tomer, Halfon, Matan, Schneidman-Duhovny, Dina, Zhu, Shaowen, Sun, Yuanfei, Shen, Yang, Maszota-Zieleniak, Martyna, Bojarski, Krzysztof K, Lubecka, Emilia A, Marcisz, Mateusz, Danielsson, Annemarie, Dziadek, Lukasz, Gaardlos, Margrethe, Gieldon, Artur, Liwo, Adam, Samsonov, Sergey A, Slusarz, Rafal, Zieba, Karolina, Sieradzan, Adam K, Czaplewski, Cezary, Kobayashi, Shinpei, Miyakawa, Yuta, Kiyota, Yasuomi, Takeda-Shitaka, Mayuko, Olechnovic, Kliment, Valancauskas, Lukas, Dapkunas, Justas, Venclovas, Ceslovas, Wallner, Bjorn, Yang, Lin, Hou, Chengyu, He, Xiaodong, Guo, Shuai, Jiang, Shenda, Ma, Xiaoliang, Duan, Rui, Qui, Liming, Xu, Xianjin, Zou, Xiaoqin, Velankar, Sameer, Wodak, Shoshana J
المساهمون: Sub NMR Spectroscopy, NMR Spectroscopy
مصطلحات موضوعية: AlphaFold, CAPRI, CASP, blind prediction, deep learning, protein assemblies, protein complexes, protein-protein interaction, Molecular Biology, Structural Biology, Biochemistry
وصف الملف: application/pdf
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9دورية أكاديمية
المؤلفون: Lin, Weiwei, Mousavi, Fatemeh, Blum, Benjamin C., Heckendorf, Christian F., Moore, Jarrod, Lampl, Noah, McComb, Mark, Kotelnikov, Sergei, Yin, Wenqing, Rabhi, Nabil, Layne, Matthew D., Kozakov, Dima, Chitalia, Vipul C., Emili, Andrew
المساهمون: Canadian Institutes of Health Research, Boston University
المصدر: Frontiers in Pharmacology ; volume 14 ; ISSN 1663-9812
مصطلحات موضوعية: Pharmacology (medical), Pharmacology
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10دورية أكاديمية
المؤلفون: Chen, Shi-Jie, Hassan, Mubashir, Jernigan, Robert L., Jia, Kejue, Kihara, Daisuke, Kloczkowski, Andrzej, Kotelnikov, Sergei, Kozakov, Dima, Liang, Jie, Liwo, Adam, Matysiak, Silvina, Meller, Jarek, Micheletti, Cristian, Mitchell, Julie C., Mondal, Sayantan, Nussinov, Ruth, Okazaki, Kei-ichi, Padhorny, Dzmitry, Skolnick, Jeffrey, Sosnick, Tobin R.
العلاقة: https://knowledge.uchicago.edu/record/10347/files/pnas.2214423119_v1.pdfTest; https://knowledge.uchicago.edu/record/10347/files/chen-et-al-2022-protein-folds-vs-protein-folding-differing-questions-different-challenges.pdfTest; http://knowledge.uchicago.edu/record/10347Test