المؤلفون: Gerard J. Kleywegt, Paul D. Adams, Sarah J. Butcher, Catherine L. Lawson, Alexis Rohou, Peter B. Rosenthal, Sriram Subramaniam, Maya Topf, Sanja Abbott, Philip R. Baldwin, John M. Berrisford, Gérard Bricogne, Preeti Choudhary, Tristan I. Croll, Radostin Danev, Sai J. Ganesan, Timothy Grant, Aleksandras Gutmanas, Richard Henderson, J. Bernard Heymann, Juha T. Huiskonen, Andrei Istrate, Takayuki Kato, Gabriel C. Lander, Shee-Mei Lok, Steven J. Ludtke, Garib N. Murshudov, Ryan Pye, Grigore D. Pintilie, Jane S. Richardson, Carsten Sachse, Osman Salih, Sjors H. W. Scheres, Gunnar F. Schroeder, Carlos Oscar S. Sorzano, Scott M. Stagg, Zhe Wang, Rangana Warshamanage, John D. Westbrook, Martyn D. Winn, Jasmine Y. Young, Stephen K. Burley, Jeffrey C. Hoch, Genji Kurisu, Kyle Morris, Ardan Patwardhan, Sameer Velankar

المصدر: IUCrJ, Vol 11, Iss 2, Pp 140-151 (2024)

مصطلحات موضوعية: cryogenic-specimen electron microscopy, data archiving, validation, quality control, electron microscopy data bank, protein data bank, single-particle cryoem, databases, bioinformatics, structure determination, Crystallography, QD901-999

وصف الملف: electronic resource

العلاقة: http://scripts.iucr.org/cgi-bin/paper?S2052252524001246Test; https://doaj.org/toc/2052-2525Test

الوصول الحر: https://doaj.org/article/0e43f020fe4a4894b6f5aa6a5fd3dc2fTest

المؤلفون: Gerard J Kleywegt, Paul D Adams, Sarah J Butcher, Catherine L Lawson, Alexis Rohou, Peter B Rosenthal, Sriram Subramaniam, Maya Topf, Sanja Abbott, Philip R Baldwin, John M Berrisford, Gérard Bricogne, Preeti Choudhary, Tristan I Croll, Radostin Danev, Sai J Ganesan, Timothy Grant, Aleksandras Gutmanas, Richard Henderson, J Bernard Heymann, Juha T Huiskonen, Andrei Istrate, Takayuki Kato, Gabriel C Lander, Shee Mei Lok, Steven J Ludtke, Garib N Murshudov, Ryan Pye, Grigore D Pintilie, Jane S Richardson, Carsten Sachse, Osman Salih, Sjors HW Scheres, Gunnar F Schroeder, Carlos Oscar S Sorzano, Scott M Stagg, Zhe Wang, Rangana Warshamanage, John D Westbrook, Martyn D Winn, Jasmine Y Young, Stephen K Burley, Jeffrey C Hoch, Genji Kurisu, Kyle Morris, Ardan Patwardhan, Sameer Velankar

مصطلحات موضوعية: Model organisms, Imaging, Structural Biology & Biophysics, Cell Biology, Infectious Disease, bioinformatics, cryogenic-specimen electron microscopy, data archiving, databases, Electron Microscopy Data Bank, Protein Data Bank, quality control, single-particle cryoEM, structure determination, validation, Rosenthal CC2106, 0202 Atomic, Molecular, Nuclear, Particle and Plasma Physics, 0204 Condensed Matter Physics, 0306 Physical Chemistry (incl. Structural), 3406 Physical chemistry, 5104 Condensed matter physics

العلاقة: https://figshare.com/articles/journal_contribution/Community_recommendations_on_cryoEM_data_archiving_and_validation_/25250728Test

الإتاحة: https://doi.org/10.25418/crick.25250728.v1Test
https://figshare.com/articles/journal_contribution/Community_recommendations_on_cryoEM_data_archiving_and_validation_/25250728Test

المؤلفون: David R. Armstrong, Nurul Nadzirin, Lukáš Pravda, Mihaly Varadi, Sameer Velankar, Stephen Anyango, Saqib Mir, John M. Berrisford, Sreenath Nair, Aleksandras Gutmanas

المصدر: Bioinformatics

مصطلحات موضوعية: Statistics and Probability, Supplementary data, Information retrieval, Source code, Graph database, AcademicSubjects/SCI01060, Computer science, media_common.quotation_subject, computer.file_format, Python (programming language), Protein Data Bank, computer.software_genre, Applications Notes, Structural Bioinformatics, Biochemistry, Computer Science Applications, Computational Mathematics, Computational Theory and Mathematics, Knowledge graph, UniProt, Molecular Biology, computer, media_common, computer.programming_language

الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::7edca8429dcfe39b47c84ea1d71e3116Test
https://doi.org/10.1093/bioinformatics/btab424Test

المؤلفون: David Bednar, Sucharita Dey, Emmanuel D. Levy, Natarajan Kannan, Bissan Al-Lazikani, Damiano Piovesan, Luis A Rodriguez, Sameer Velankar, Mihaly Varadi, Jan Stourac, Jaime Prilusky, Manjeet Kumar, Radoslav Krivak, Michael J.E. Sternberg, Juan Fernandez Recio, Daniel Zaidman, David R. Armstrong, Nathan J Rollins, Gulzar Singh, Jiri Damborsky, Dandan Xue, Stephen Anyango, Vivek Modi, Antonio Rosato, Christine A. Orengo, Valeria Putignano, Radka Svobodová, Alessia David, Debora S. Marks, Roland L. Dunbrack, Jose Ramon Macias, David Jakubec, Mark N. Wass, Luis Serrano, Silvio C. E. Tosatto, John M. Berrisford, Ahsan Tanweer, Sreenath Nair, Geoffrey J. Barton, Wim F. Vranken, Lukáš Pravda, Karel Berka, Stuart A McGowan, Janet M. Thornton, Nir London, Madhusudhan M Srivatsan, Lennart Martens, Atilio O Rausch, Toby J. Gibson, Pawel Rubach, Joanna I. Sulkowska, Petr Škoda, Gerardo Pepe, Nathalie Reuter, Natalia Tichshenko, Mandar Deshpande, Franca Fraternali, David Hoksza, Tom L. Blundell, R. Gonzalo Parra, Preeti Choudhary, José María Carazo, Claudia Andreini, Jake E McGreig, Leandro G Radusky, Thomas A. Hopf, Pathmanaban Ramasamy, Carlos Oscar S. Sorzano, Manuela Helmer-Citterich, Kelly P Brock, Nurul Nadzirin

المساهمون: Faculty of Sciences and Bioengineering Sciences, Department of Bio-engineering Sciences, Basic (bio-) Medical Sciences, Chemistry, Informatics and Applied Informatics, Barcelona Supercomputing Center, Biotechnology and Biological Sciences Research Council (UK), European Molecular Biology Laboratory, Ministry of Education, Youth and Sports (Czech Republic), European Commission, Research Foundation - Flanders, Fondazione Cassa di Risparmio di Firenze, Ministerio de Ciencia, Innovación y Universidades (España), Agencia Estatal de Investigación (España), Wellcome Trust

المصدر: Nucleic acids research
Nucleic Acids Research
Nucleic Acids Research (NAR)
D534-D542
UPCommons. Portal del coneixement obert de la UPC
Universitat Politècnica de Catalunya (UPC)
D542
D534

مصطلحات موضوعية: Models, Molecular, Informàtica::Aplicacions de la informàtica::Bioinformàtica [Àrees temàtiques de la UPC], Knowledge Base, AcademicSubjects/SCI00010, Protein Conformation, Knowledge Bases, 05 Environmental Sciences, Context (language use), WEB SERVER, PROTEIN, PREDICT, Biology, structural biology, database, bioinorganic chemistry, Macromolecular structure data, 03 medical and health sciences, Structure-Activity Relationship, User-Computer Interface, Bioinformàtica, Genetics, Database Issue, Humans, Protein sequencing, Phosphorylation, Databases, Protein, 030304 developmental biology, 0303 health sciences, Internet, Settore BIO/11, 030302 biochemistry & molecular biology, Proteins, Molecular Sequence Annotation, Protein Data Bank (PDB), 06 Biological Sciences, Data science, Europe, Gene Ontology, Macromolecules, Mutation, 08 Information and Computing Sciences, Protein Processing, Post-Translational, Proteïnes, Developmental Biology

وصف الملف: application/pdf

الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::050cb89e62952b78f542717c68240da1Test
https://kar.kent.ac.uk/95049/1/gkab988.pdfTest

المؤلفون: John D. Westbrook, Jasmine Y. Young, Chenghua Shao, Zukang Feng, Vladimir Guranovic, Catherine L. Lawson, Brinda Vallat, Paul D. Adams, John M Berrisford, Gerard Bricogne, Kay Diederichs, Robbie P. Joosten, Peter Keller, Nigel W. Moriarty, Oleg V. Sobolev, Sameer Velankar, Clemens Vonrhein, David G. Waterman, Genji Kurisu, Helen M. Berman, Stephen K. Burley, Ezra Peisach

المصدر: Journal of molecular biology, vol 434, iss 11

مصطلحات موضوعية: Biochemistry & Molecular Biology, Macromolecular Substances, Protein Conformation, Bioengineering, Microbiology, Databases, Medicinal and Biomolecular Chemistry, Structural Biology, Underpinning research, ddc:570, protein data bank, Databases, Protein, Molecular Biology, Crystallography, Protein, Computational Biology, macromolecular structure, 1.5 Resources and infrastructure (underpinning), Semantics, Networking and Information Technology R&D (NITRD), data standard, data management, Generic health relevance, Biochemistry and Cell Biology, biological data, Software

وصف الملف: application/pdf

الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::9054c5675bbed4d1a40c7a38f5ad581dTest
https://pubmed.ncbi.nlm.nih.gov/35460671Test

المؤلفون: Harry Jubb, Aleksandras Gutmanas, Radka Svobodová, Stephen Anyango, Sreenath Nair, Manjeet Kumar, Jonathan D. Tyzack, Leandro G Radusky, Toby J. Gibson, Liang-Chin Huang, Luis Serrano, Eloy Villasclaras Fernandez, Sameer Velankar, Petr Škoda, Michael J.E. Sternberg, Mark N. Wass, Fábio Madeira, Christine A. Orengo, Rishabh Jain, Stuart A. MacGowan, Patrizio Di Micco, Sayoni Das, Emmanuel D. Levy, Natarajan Kannan, John M. Berrisford, Tom L. Blundell, Janet M. Thornton, Radoslav Krivak, Christos C. Kannas, Lukáš Pravda, Bissan Al-Lazikani, Jose M. Dana, Abhik Mukhopadhyay, David R. Armstrong, Saqib Mir, Mihaly Varadi, Franca Fraternali, Karel Berka, Mallur S. Madhusudhan, Jake E McGreig, Mandar Deshpande, Neera Borkakoti, Luca Parca, António J. M. Ribeiro, Ian Sillitoe, Henry J Martell, Manuela Helmer-Citterich, Sucharita Dey, David Hoksza, Gulzar Singh, Jaroslav Koča, Typhaine Paysan-Lafosse, Geoffrey J. Barton, Alfonso Valencia, Wim F. Vranken

المساهمون: Biotechnology and Biological Sciences Research Council (BBSRC), Faculty of Sciences and Bioengineering Sciences, Basic (bio-) Medical Sciences, Chemistry, Informatics and Applied Informatics, Department of Bio-engineering Sciences, Apollo - University of Cambridge Repository

المصدر: Nucleic Acids Research
D353
D344

مصطلحات موضوعية: Knowledge Bases, 05 Environmental Sciences, Interoperability, Protein Data Bank (RCSB PDB), Context (language use), Biology, Market fragmentation, Workflow, Set (abstract data type), 03 medical and health sciences, User-Computer Interface, 0302 clinical medicine, Genetics, Database Issue, PDBe-KB consortium, Databases, Protein, 030304 developmental biology, 0303 health sciences, Internet, Information retrieval, Settore BIO/11, Proteins, computer.file_format, 06 Biological Sciences, Protein Data Bank, Europe, Data exchange, 08 Information and Computing Sciences, UniProt, computer, 030217 neurology & neurosurgery, Developmental Biology

وصف الملف: application/pdf

الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::aa27c0dd4bcd59db90b1d8c5a0ca1042Test
http://europepmc.org/articles/PMC6943075Test

المؤلفون: John D. Westbrook, Stephen K. Burley, Zukang Feng, Ezra Peisach, Chenghua Shao, John M. Berrisford, Jasmine Young, Genji Kurisu, Sameer Velankar, Yasuyo Ikegawa

المصدر: Glycobiology

مصطلحات موضوعية: 0303 health sciences, Computer science, 030302 biochemistry & molecular biology, Protein Data Bank (RCSB PDB), Carbohydrates, Findability, Proteins, Structure validation, computer.file_format, Computational biology, Data dictionary, Protein Data Bank, External Data Representation, Biochemistry, 03 medical and health sciences, Reference data, Crystallographic Information File, Structural Biology, Databases, Protein, computer, 030304 developmental biology

الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e823f50a837a334b36bd45bb46eb3d62Test
https://pubmed.ncbi.nlm.nih.gov/33978738Test

المؤلفون: Marcin Wojdyr, Paul D. Adams, David G. Brown, Zukang Feng, Yasuyo Ikegawa, Lora Mak, Minyu Chen, Billy K. Poon, John D. Westbrook, Ezra Peisach, Jasmine Young, Helen M. Berman, Masashi Yokochi, Nigel W. Moriarty, Yu-He Liang, Stephen K. Burley, John L. Markley, Garib N. Murshudov, John M. Berrisford, Eldon L. Ulrich, Sameer Velankar, Yumiko Kengaku, Aleksandras Gutmanas, Dorothee Liebschner, C. Flensburg, Pavel V. Afonine, Kumaran Baskaran, Clemens Vonrhein, Jeffrey C. Hoch, Eugene Krissinel, Irina Persikova, Genji Kurisu, Oleg V. Sobolev, Martin E.M. Noble, Gérard Bricogne

المصدر: Acta crystallographica. Section D, Structural biology, vol 75, iss Pt 4

مصطلحات موضوعية: PDB, PDBx, Protein Conformation, Computer science, Biophysics, Protein Data Bank (RCSB PDB), Crystallography, X-Ray, 010402 general chemistry, 01 natural sciences, Databases, OneDep, 03 medical and health sciences, macromolecular crystallography, Protein Data Bank, Structural Biology, Humans, Letters to the Editor, Databases, Protein, Worldwide Protein Data Bank, 030304 developmental biology, PDBx/mmCIF format, validation, 0303 health sciences, Crystallography, Protein, biocuration, Macromolecular crystallography, Proteins, computer.file_format, mmCIF format, Biological Sciences, Data dictionary, 0104 chemical sciences, data archiving, Physical Sciences, Chemical Sciences, X-Ray, mmCIF, wwPDB, Database Management Systems, data dictionary, data standards, computer, Software

الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::88e593a136cedb0a65b4e5c2e32df2a6Test
https://doi.org/10.1107/s2059798319004522Test

المؤلفون: Masashi Yokochi, Ju Yaen Kim, Chenghua Shao, John M. Berrisford, Hongyang Yao, Miron Livny, Stephen Anyango, Abhik Mukhopadhyay, Romana Gáborová, Yi-Ping Tao, Monica Sekharan, Aleksandras Gutmanas, Jose M. Dana, Mandar Deshpande, Charmi Bhikadiya, Yannis Ioannidis, Pedro Romero, Jonathan R. Wedell, Eldon L. Ulrich, Gert-Jan Bekker, Chris Randle, Chunxiao Bi, Jeffrey C. Hoch, Nurul Nadzirin, Jaroslav Koča, Yumiko Kengaku, Jasmine Young, Cole Christie, John D. Westbrook, Naohiro Kobayashi, Alexander S. Rose, Sameer Velankar, David Sehnal, Lukáš Pravda, David R. Armstrong, Hasumi Cho, Genji Kurisu, Lora Mak, John L. Markley, Saqib Mir, Sutapa Ghosh, Ardan Patwardhan, Zukang Feng, Stephen K. Burley, Robert Lowe, David S. Goodsell, Hirofumi Suzuki, Maria Voigt, Paul Gane, Jose M. Duarte, Osman Salih, Irina Periskova, Matthew J. Conroy, Toshimichi Fujiwara, Yasuyo Ikegawa, Takahiro Kudou, Dimitri Maziuk, Typhaine Paysan-Lafosse, Brian P. Hudson, Christine Zardecki, Sreenath Nair, Gerard J. Kleywegt, Marina A. Zhuravleva, Shuchismita Dutta, Dmytro Guzenko, Kumaran Baskaran, Rachel Kramer Green, Ezra Peisach, Li Chen, Reiko Yamashita, Vladimir Guranovic, Yu-He Liang, Takeshi Iwata, Atsushi Nakagawa, Haruki Nakamura, Junko Sato, Radka Svobodová Vařeková, Helen M. Berman, Deepti Gupta, Luigi Di Costanzo, Mihaly Varadi, Yana Valasatava

المساهمون: Burley, S. K., Berman, H. M., Bhikadiya, C., Bi, C., Chen, L., DI COSTANZO, Luigi, Addeo, PIETRO FRANCESCO BRUNO CHRISTI, Duarte, J. M., Dutta, S., Feng, Z., Ghosh, S., Goodsell, D. S., Green, R. K., Guranovic, V., Guzenko, D., Hudson, B. P., Liang, Y., Lowe, R., Peisach, E., Periskova, I., Randle, C., Rose, A., Sekharan, M., Shao, C., Tao, Y. -P., Valasatava, Y., Voigt, M., Westbrook, J., Young, J., Zardecki, C., Zhuravleva, M., Kurisu, G., Nakamura, H., Kengaku, Y., Cho, H., Sato, J., Kim, J. Y., Ikegawa, Y., Nakagawa, A., Yamashita, R., Kudou, T., Bekker, G. -J., Suzuki, H., Iwata, T., Yokochi, M., Kobayashi, N., Fujiwara, T., Velankar, S., Kleywegt, G. J., Anyango, S., Armstrong, D. R., Berrisford, J. M., Conroy, M. J., Dana, J. M., Deshpande, M., Gane, P., Gaborova, R., Gupta, D., Gutmanas, A., Koca, J., Mak, L., EL MIR, Abdelouahad, Mukhopadhyay, A., Nadzirin, N., Nair, S., Patwardhan, A., Paysan-Lafosse, T., Pravda, L., Salih, O., Sehnal, D., Varadi, M., Varekova, R., Markley, J. L., Hoch, J. C., Romero, P. R., Baskaran, K., Maziuk, D., Ulrich, E. L., Wedell, J. R., Sicong, Yao, Livny, M., Ioannidis, Y. E.

المصدر: Nucleic Acids Research

مصطلحات موضوعية: Models, Molecular, Protein Conformation, Molecular Conformation, Protein Data Bank (RCSB PDB), Master data, Biology, computer.software_genre, 03 medical and health sciences, 0302 clinical medicine, Genetics, Database Issue, RDF, Databases, Protein, 030304 developmental biology, Structure (mathematical logic), 0303 health sciences, Database, Experimental data, DNA, computer.file_format, Atomic coordinates, Protein Data Bank, Metadata, Metals, Nucleic Acid Conformation, RNA, computer, 030217 neurology & neurosurgery

الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::270875b3782759eb0deca83927e6993cTest
https://doi.org/10.1093/nar/gky949Test

المؤلفون: Minyu Chen, Jasmine Young, John M. Berrisford

المصدر: Nature Methods. 18:431-432

مصطلحات موضوعية: 0303 health sciences, 2019-20 coronavirus outbreak, Engineering, Coronavirus disease 2019 (COVID-19), SARS-CoV-2, business.industry, Extramural, Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), COVID-19, Cell Biology, History, 20th Century, History, 21st Century, Biochemistry, World Wide Web, 03 medical and health sciences, Structural biology, Research community, Humans, Databases, Protein, business, Molecular Biology, 030304 developmental biology, Biotechnology

الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::44f30f1254916f54798d4a6322eec68dTest
https://doi.org/10.1038/s41592-021-01137-zTest