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1دورية أكاديمية
المصدر: Clinical and Translational Radiation Oncology ; volume 38, page 104-110 ; ISSN 2405-6308
مصطلحات موضوعية: Radiology, Nuclear Medicine and imaging, Oncology
الإتاحة: https://doi.org/10.1016/j.ctro.2022.10.009Test
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https://api.elsevier.com/content/article/PII:S2405630822000933?httpAccept=text/plainTest -
2دورية أكاديمية
المؤلفون: Banes‐Berceli, Amy, Polina, Aws, Singhal, Sara, Jammerino, Jennifer, Fulton, Matthew, Geddes, Timothy, Thibodeau, Bryan, Wison, George, Hafron, Jason
المصدر: The FASEB Journal ; volume 29, issue S1 ; ISSN 0892-6638 1530-6860
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3دورية أكاديمية
المؤلفون: Pinatti, Lisa M., Sinha, Hana N., Brummel, Collin V., Goudsmit, Christine M., Geddes, Timothy J., Wilson, George D., Akervall, Jan A., Brenner, Chad J., Walline, Heather M., Carey, Thomas E.
مصطلحات موضوعية: human papillomavirus (HPV), survival, head and neck squamous cell carcinoma (HNSCC), oropharynx, integration, Otolaryngology, Health Sciences
وصف الملف: application/pdf
العلاقة: Pinatti, Lisa M.; Sinha, Hana N.; Brummel, Collin V.; Goudsmit, Christine M.; Geddes, Timothy J.; Wilson, George D.; Akervall, Jan A.; Brenner, Chad J.; Walline, Heather M.; Carey, Thomas E. (2021). "Association of human papillomavirus integration with better patient outcomes in oropharyngeal squamous cell carcinoma." Head & Neck 43(2): 544-557.; https://hdl.handle.net/2027.42/166276Test; https://dx.doi.org/10.7302/199Test; Head & Neck; Wittekindt C, Wagner S, Bushnak A, et al. Increasing incidence rates of oropharyngeal squamous cell carcinoma in germany and significance of disease burden attributed to human papillomavirus. Cancer Prev Res (Phila). 2019; 12 ( 6 ): 375 ‐ 382.; Olthof NC, Speel EJ, Kolligs J, et al. Comprehensive analysis of HPV16 integration in OSCC reveals no significant impact of physical status on viral oncogene and virally disrupted human gene expression. Plos One. 2014; 9 ( 2 ): e88718.; Ibragimova M, Tsyganov M, Shpileva O, et al. HPV status and its genomic integration affect survival of patients with cervical cancer. Neoplasma. 2018; 65 ( 3 ): 441 ‐ 448.; Kiseleva VI, Mkrtchyan LS, Ivanov SA, et al. The presence of human papillomavirus DNA integration is associated with poor clinical results in patients with third‐stage cervical cancer. Bull Exp Biol Med. 2019; 168 ( 1 ): 87 ‐ 91.; Shin HJ, Joo J, Yoon JH, Yoo CW, Kim JY. Physical status of human papillomavirus integration in cervical cancer is associated with treatment outcome of the patients treated with radiotherapy. Plos One. 2014; 9 ( 1 ): e78995.; Anayannis NV, Schlecht NF, Ben‐Dayan M, et al. Association of an intact E2 gene with higher HPV viral load, higher viral oncogene expression, and improved clinical outcome in HPV16 positive head and neck squamous cell carcinoma. Plos One. 2018; 13 ( 2 ): e0191581.; Nulton TJ, Kim NK, DiNardo LJ, Morgan IM, Windle B. Patients with integrated HPV16 in head and neck cancer show poor survival. Oral Oncol. 2018; 80: 52 ‐ 55.; Lim MY, Dahlstrom KR, Sturgis EM, Li G. Human papillomavirus integration pattern and demographic, clinical, and survival characteristics of patients with oropharyngeal squamous cell carcinoma. Head Neck. 2016; 38 ( 8 ): 1139 ‐ 1144.; Vojtechova Z, Sabol I, Salakova M, et al. Analysis of the integration of human papillomaviruses in head and neck tumours in relation to patients’ prognosis. Int J Cancer. 2016; 138 ( 2 ): 386 ‐ 395.; Koneva LA, Zhang Y, Virani S, et al. HPV integration in HNSCC correlates with survival outcomes, immune response signatures, and candidate drivers. Mol Cancer Res. 2017; 16 ( 1 ): 90 – 102.; Walline HM, Komarck CM, McHugh JB, et al. Genomic integration of high‐risk HPV alters gene expression in oropharyngeal squamous cell carcinoma. Mol Cancer Res. 2016; 14 ( 10 ): 941 ‐ 952.; Walline HM, Komarck CM, McHugh JB, et al. High‐risk human papillomavirus detection in oropharyngeal, nasopharyngeal, and, oral cavity cancers: Comparison of multiple methods. JAMA Otolaryngology. 2013; 139 ( 12 ): 1320 ‐ 1327.; Luft F, Klaes R, Nees M, et al. Detection of integrated papillomavirus sequences by ligation‐mediated PCR (DIPS‐PCR) and molecular characterization in cervical cancer cells. Int J Cancer. 2001; 92 ( 1 ): 9 ‐ 17.; Lundberg M, Leivo I, Saarilahti K, Makitie AA, Mattila PS. Increased incidence of oropharyngeal cancer and p16 expression. Acta Otolaryngol. 2011; 131 ( 9 ): 1008 ‐ 1011.; Chaturvedi AK, Engels EA, Pfeiffer RM, et al. Human papillomavirus and rising oropharyngeal cancer incidence in the United States. J Clin Oncol. 2011; 29 ( 32 ): 4294 ‐ 4301.; Bigelow EO, Seiwert TY, Fakhry C. Deintensification of treatment for human papillomavirus‐related oropharyngeal cancer: Current state and future directions. Oral Oncol. 2020; 105: 104652.; Marur S, Li S, Cmelak AJ, et al. E1308: Phase II trial of induction chemotherapy followed by reduced‐dose radiation and weekly cetuximab in patients with hpv‐associated resectable squamous cell carcinoma of the oropharynx‐ECOG‐ACRIN Cancer Research Group. J Clin Oncol. 2017; 35 ( 5 ): 490 ‐ 497.; Misiukiewicz K, Gupta V, Miles BA, et al. Standard of care vs reduced‐dose chemoradiation after induction chemotherapy in HPV+ oropharyngeal carcinoma patients: The Quarterback trial. Oral Oncol. 2019; 95: 170 ‐ 177.; Seiwert TY, Foster CC, Blair EA, et al. OPTIMA: a phase II dose and volume de‐escalation trial for human papillomavirus‐positive oropharyngeal cancer. Ann Oncol. 2019; 30 ( 10 ): 1673.; Tian R, Cui Z, He D, et al. Risk stratification of cervical lesions using capture sequencing and machine learning method based on HPV and human integrated genomic profiles. Carcinogenesis. 2019; 40 ( 10 ): 1220 ‐ 1228.; Liu L, Ying C, Zhao Z, et al. Identification of reliable biomarkers of human papillomavirus 16 methylation in cervical lesions based on integration status using high‐resolution melting analysis. Clin Epigenetics. 2018; 10: 10.; Schmitz M, Driesch C, Jansen L, Runnebaum IB, Durst M. Non‐random integration of the HPV genome in cervical cancer. PLoS One. 2012; 7 ( 6 ): e39632.; Pinatti LM, Walline HM, Carey TE, Klussman JP, Huebbers CU. Viral integration analysis reveals likely common clonal origin of bilateral HPV16‐positive, p16‐positive tonsil tumors. Arch Clin Med Case Rep. 2020; 4: 680 ‐ 696.; Chen J, Li S, Zhou S, et al. Kinesin superfamily protein expression and its association with progression and prognosis in hepatocellular carcinoma. J Cancer Res Ther. 2017; 13 ( 4 ): 651 ‐ 659.; Sun ZG, Pan F, Shao JB, Yan QQ, Lu L, Zhang N. Kinesin superfamily protein 21B acts as an oncogene in non‐small cell lung cancer. Cancer Cell Int. 2020; 20: 233.; Zhao HQ, Dong BL, Zhang M, et al. Increased KIF21B expression is a potential prognostic biomarker in hepatocellular carcinoma. World J Gastrointest Oncol. 2020; 12 ( 3 ): 276 ‐ 288.; Reuschenbach M, Huebbers CU, Prigge ES, et al. Methylation status of HPV16 E2‐binding sites classifies subtypes of HPV‐associated oropharyngeal cancers. Cancer Am Cancer Soc. 2015; 121 ( 12 ): 1966 ‐ 1976.; von Knebel Doeberitz M, Prigge ES. Role of DNA methylation in HPV associated lesions. Papillomavirus Res. 2019; 7: 180 ‐ 183.; Wallace NA, Khanal S, Robinson KL, Wendel SO, Messer JJ, Galloway DA. High‐risk alphapapillomavirus oncogenes impair the homologous recombination pathway. J Virol. 2017; 91 ( 20 ):e01084‐17. https://doi.org/10.1128/JVI.01084-17Test.; Oguejiofor K, Hall J, Slater C, et al. Stromal infiltration of CD8 T cells is associated with improved clinical outcome in HPV‐positive oropharyngeal squamous carcinoma. Br J Cancer. 2015; 113 ( 6 ): 886 ‐ 893.; Mahal BA, Catalano PJ, Haddad RI, et al. Incidence and demographic burden of HPV‐associated oropharyngeal head and neck cancers in the United States. Cancer Epidemiol Biomarkers Prev. 2019; 28 ( 10 ): 1660 ‐ 1667.; Gillison ML, Koch WM, Capone RB, et al. Evidence for a causal association between human papillomavirus and a subset of head and neck cancers. J Natl Cancer Inst. 2000; 92 ( 9 ): 709 ‐ 720.; Fakhry C, Westra WH, Li S, et al. Improved survival of patients with human papillomavirus‐positive head and neck squamous cell carcinoma in a prospective clinical trial. J Natl Cancer Inst. 2008; 100 ( 4 ): 261 ‐ 269.; Licitra L, Perrone F, Bossi P, et al. High‐risk human papillomavirus affects prognosis in patients with surgically treated oropharyngeal squamous cell carcinoma. J Clin Oncol. 2006; 24 ( 36 ): 5630 ‐ 5636.; Ang KK, Harris J, Wheeler R, et al. Human papillomavirus and survival of patients with oropharyngeal cancer. N Engl J Med. 2010; 363 ( 1 ): 24 ‐ 35.; Bodelon C, Untereiner ME, Machiela MJ, Vinokurova S, Wentzensen N. Genomic characterization of viral integration sites in HPV‐related cancers. Int J Cancer. 2016; 139 ( 9 ): 2001 ‐ 2011.; Gao G, Wang J, Kasperbauer JL, et al. Whole genome sequencing reveals complexity in both HPV sequences present and HPV integrations in HPV‐positive oropharyngeal squamous cell carcinomas. BMC Cancer. 2019; 19 ( 1 ): 352.; Holmes A, Lameiras S, Jeannot E, et al. Mechanistic signatures of HPV insertions in cervical carcinomas. NPJ Genom Med. 2016; 1: 16004.; Kalantari M, Villa LL, Calleja‐Macias IE, Bernard HU. Human papillomavirus‐16 and ‐18 in penile carcinomas: DNA methylation, chromosomal recombination and genomic variation. Int J Cancer. 2008; 123 ( 8 ): 1832 ‐ 1840.; Morel A, Neuzillet C, Wack M, et al. Mechanistic signatures of human papillomavirus insertions in anal squamous cell carcinomas. Cancers (Basel). 2019; 11 ( 12 ): 1846. https://doi.org/10.3390/cancers11121846Test.; Nulton TJ, Olex AL, Dozmorov M, Morgan IM, Windle B. Analysis of The Cancer Genome Atlas sequencing data reveals novel properties of the human papillomavirus 16 genome in head and neck squamous cell carcinoma. Oncotarget. 2017; 8 ( 11 ): 17684 ‐ 17699.; Parfenov M, Pedamallu CS, Gehlenborg N, et al. Characterization of HPV and host genome interactions in primary head and neck cancers. Proc Natl Acad Sci U S A. 2014; 111 ( 43 ): 15544 ‐ 15549.; Hu Z, Zhu D, Wang W, et al. Genome‐wide profiling of HPV integration in cervical cancer identifies clustered genomic hot spots and a potential microhomology‐mediated integration mechanism. Nat Genet. 2015; 47 ( 2 ): 158 ‐ 163.; McBride AA, Warburton A. The role of integration in oncogenic progression of HPV‐associated cancers. PLoS Pathog. 2017; 13 ( 4 ): e1006211.; McBride AA. The papillomavirus E2 proteins. Virology. 2013; 445 ( 1–2 ): 57 ‐ 79.; Zhang Y, Koneva LA, Virani S, et al. Subtypes of HPV‐positive head and neck cancers are associated with HPV characteristics, copy number alterations, PIK3CA mutation, and pathway signatures. Clin Cancer Res. 2016; 22 ( 18 ): 4735 ‐ 4745.; Qin T, Koneva LA, Liu Y, et al. Significant association between host transcriptome‐derived HPV oncogene E6* influence score and carcinogenic pathways, tumor size, and survival in head and neck cancer. Head Neck. 2020; 42 ( 9 ): 2375 ‐ 2389.; Jeon S, Lambert PF. Integration of human papillomavirus type 16 DNA into the human genome leads to increased stability of E6 and E7 mRNAs: implications for cervical carcinogenesis. Proc Natl Acad Sci USA. 1995; 92 ( 5 ): 1654 ‐ 1658.; Akagi K, Li J, Broutian TR, et al. Genome‐wide analysis of HPV integration in human cancers reveals recurrent, focal genomic instability. Genome Res. 2014; 24 ( 2 ): 185 ‐ 199.; Walline HM, Goudsmit CM, McHugh JB, et al. Integration of high‐risk human papillomavirus into cellular cancer‐related genes in head and neck cancer cell lines. Head Neck. 2017; 39 ( 5 ): 840 ‐ 852.
الإتاحة: https://doi.org/10.1002/hed.26501Test
https://doi.org/10.7302/199Test
https://doi.org/10.1128/JVI.01084-17Test
https://doi.org/10.3390/cancers11121846Test
https://hdl.handle.net/2027.42/166276Test -
4دورية أكاديمية
المؤلفون: Banes‐Berceli, Amy, Singhal, Sara, Fulton, Matthew, Geddes, Timothy, Thibodeau, Bryan, Wilson, George, Hafron, Jason
المصدر: The FASEB Journal ; volume 28, issue S1 ; ISSN 0892-6638 1530-6860
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5دورية أكاديمية
المؤلفون: Pezeshkian, Bahareh, Donnelly, Christopher, Tamburo, Kelley, Geddes, Timothy, Madlambayan, Gerard J.
المساهمون: St-Pierre, Yves
المصدر: PLoS ONE ; volume 8, issue 4, page e60823 ; ISSN 1932-6203
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6دورية أكاديمية
المؤلفون: Kuhn, Donald M., Sykes, Catherine E., Geddes, Timothy J., Jaunarajs, Karen L. Eskow, Bishop, Christopher
المصدر: Journal of Neurochemistry ; volume 116, issue 3, page 426-437 ; ISSN 0022-3042
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7دورية أكاديمية
المؤلفون: Paulauskis, Joseph D., Blanc, Victoria M., Carey, Thomas, Chesla, David W., Frey, Renée C., Geddes, Timothy, Keats, Jonathan, Loup, Allan, Pruetz, Barbara, Rohrer, Daniel C., Valley, Dana R., Tomlinson, Tom, Akervall, Jan, Wilson, George D., Jewell, Scott D.
المصدر: Biopreservation and Biobanking ; volume 17, issue 6, page 598-602 ; ISSN 1947-5535 1947-5543
مصطلحات موضوعية: Cell Biology, General Biochemistry, Genetics and Molecular Biology, General Medicine, Medicine (miscellaneous)
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8دورية أكاديمية
المؤلفون: Vijay, Vindhya, Miller, Regan, Vue, Gau Shoua, Pezeshkian, Mida Bahareh, Maywood, Michael, Ast, Allison M., Drusbosky, Leylah M., Pompeu, Yuri, Salgado, Alan D., Lipten, Samuel D., Geddes, Timothy, Blenc, Ann Marie, Ge, Yubin, Ostrov, David A., Cogle, Christopher R., Madlambayan, Gerard J.
المساهمون: National Institutes of Health
المصدر: Leukemia Research ; volume 84, page 106180 ; ISSN 0145-2126
مصطلحات موضوعية: Cancer Research, Oncology, Hematology
الإتاحة: https://doi.org/10.1016/j.leukres.2019.106180Test
https://api.elsevier.com/content/article/PII:S0145212619301250?httpAccept=text/xmlTest
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9دورية أكاديمية
المصدر: Journal of Neurochemistry ; volume 89, issue 3, page 529-536 ; ISSN 0022-3042 1471-4159
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10دورية أكاديمية
المصدر: Journal of Biological Chemistry ; volume 278, issue 31, page 28736-28742 ; ISSN 0021-9258
مصطلحات موضوعية: Cell Biology, Molecular Biology, Biochemistry
الإتاحة: https://doi.org/10.1074/jbc.m304362200Test
https://api.elsevier.com/content/article/PII:S0021925820843671?httpAccept=text/xmlTest
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