المؤلفون: Sanjeet Kumar Mahtha, Kamlesh Kumari, Vineet Gaur, Gitanjali Yadav

المصدر: Computational and Structural Biotechnology Journal, Vol 21, Iss , Pp 3946-3963 (2023)

مصطلحات موضوعية: START Domains, Oryza sativa, Lipid binding tunnels, Binding pockets, Fold prediction, Deep learning, Biotechnology, TP248.13-248.65

وصف الملف: electronic resource

العلاقة: http://www.sciencedirect.com/science/article/pii/S2001037023002726Test; https://doaj.org/toc/2001-0370Test

الوصول الحر: https://doaj.org/article/3f4ea3c9648246698cce113434b6330eTest

المؤلفون: Kinch, Lisa, Li, Wenlin, Monastyrskyy, Bohdan, Kryshtafovych, Andriy, Grishin, Nick

المصدر: Proteins: Structure, Function, and Bioinformatics, vol 84 Suppl 1, iss Suppl 1

مصطلحات موضوعية: CASP ROLL, CASP11, ab initio, alignment quality, domain structure, free modeling, protein fold prediction, protein structure, structure comparison, Amino Acid Sequence, Bacteria, Computational Biology, Computer Graphics, Databases, Protein, Humans, International Cooperation, Internet, Models, Molecular, Models, Statistical, Protein Folding, Protein Interaction Domains and Motifs, Protein Multimerization, Protein Structure, Secondary, Proteins, Sequence Alignment, Software, Viruses

وصف الملف: application/pdf

الوصول الحر: https://escholarship.org/uc/item/9qp4n54cTest

المؤلفون: Villegas Morcillo, Amelia Otilia, Gómez García, Ángel Manuel, Sánchez Calle, Victoria Eugenia

مصطلحات موضوعية: Protein Fold Prediction, Protein Language Models, Fine-Tuning Neural Networks, Embedding Learning

العلاقة: Published version: Amelia Villegas-Morcillo, Angel M Gomez, Victoria Sanchez, An analysis of protein language model embeddings for fold prediction, Briefings in Bioinformatics, Volume 23, Issue 3, May 2022, bbac142, [https://doi.org/10.1093/bib/bbac142Test]; https://hdl.handle.net/10481/80621Test

الإتاحة: https://doi.org/10.1101/2022.02.07.479394Test
https://doi.org/10.1093/bib/bbac142Test
https://hdl.handle.net/10481/80621Test

المؤلفون: Anton, Bernat, Besalú, Mireia, Fornes, Oriol, Bonet, Jaume, Molina, Alexis, Molina-Fernandez, Ruben, las Cuevas, Gemma De, Fernandez-Fuentes, Narcis, Oliva, Baldo

المساهمون: Barcelona Supercomputing Center

مصطلحات موضوعية: Àrees temàtiques de la UPC::Informàtica::Aplicacions de la informàtica::Bioinformàtica, Algorithm, Protein sequencing, Direct-coupling analysis, Protein fold prediction, RADI/raDIMod, DCA algorithm, Proteïnes

وصف الملف: 10 p.; application/pdf

العلاقة: https://academic.oup.com/nargab/article/3/2/lqab027/6246168?login=falseTest; Anton, B. [et al.]. On the use of direct-coupling analysis with a reduced alphabet of amino acids combined with super-secondary structure motifs for protein fold prediction. "NAR Genomics and Bioinformatics", 2021, vol. 3, núm. 2, lqab027.; http://hdl.handle.net/2117/364828Test

الإتاحة: https://doi.org/10.1093/nargab/lqab027Test
http://hdl.handle.net/2117/364828Test

المؤلفون: Meiler, Jens, Baker, David

المصدر: Proceedings of the National Academy of Sciences of the United States of America, 2003 Dec . 100(26), 15404-15409.

الوصول الحر: https://www.jstor.org/stable/3149018Test

المؤلفون: Xu, Chuan, Bouvier, Guillaume, Bardiaux, Benjamin, Nilges, Michael, Malliavin, Thérèse, Lisser, Abdel

المساهمون: Laboratoire de Recherche en Informatique (LRI), Université Paris-Sud - Paris 11 (UP11)-CentraleSupélec-Centre National de la Recherche Scientifique (CNRS), Bioinformatique structurale - Structural Bioinformatics, Institut Pasteur Paris (IP)-Centre National de la Recherche Scientifique (CNRS), Centre de Bioinformatique, Biostatistique et Biologie Intégrative (C3BI), This work was funded by the European Union (FP7-IDEAS-ERC 294809 to MN). Chuan Xu thanks the support for PhD thesis. University Paris-Sud, CNRS and Institut Pasteur are acknowledged for funding., European Project: 294809,EC:FP7:ERC,ERC-2011-ADG_20110310,BAYCELLS(2012)

المصدر: ISSN: 2001-0370 ; Computational and Structural Biotechnology Journal ; https://hal.science/hal-01776351Test ; Computational and Structural Biotechnology Journal, 2018, 16, pp.140 - 156. ⟨10.1016/j.csbj.2018.03.001⟩.

مصطلحات موضوعية: Protein contact matrix, Fold prediction, Graph theory, Dynamic programming, Self-organizing map, [INFO.INFO-RO]Computer Science [cs]/Operations Research [cs.RO], [SDV.BIBS]Life Sciences [q-bio]/Quantitative Methods [q-bio.QM]

العلاقة: info:eu-repo/semantics/altIdentifier/pmid/29632657; info:eu-repo/grantAgreement/EC/FP7/294809/EU/A Bayesian Framework for Cellular Structural Biology/BAYCELLS; hal-01776351; https://hal.science/hal-01776351Test; https://hal.science/hal-01776351/documentTest; https://hal.science/hal-01776351/file/1-s2.0-S2001037017301058-main.pdfTest; PUBMED: 29632657; PUBMEDCENTRAL: PMC5889711

الإتاحة: https://doi.org/10.1016/j.csbj.2018.03.001Test
https://hal.science/hal-01776351Test
https://hal.science/hal-01776351/documentTest
https://hal.science/hal-01776351/file/1-s2.0-S2001037017301058-main.pdfTest

المؤلفون: Amelia Villegas-Morcillo, Angel M. Gomez, Victoria Sanchez

المصدر: Briefings in Bioinformatics. 23

مصطلحات موضوعية: Embedding Learning, Proteins, Protein Language Models, Neural Networks, Computer, Protein Fold Prediction, Molecular Biology, Fine-Tuning Neural Networks, Language, Natural Language Processing, Information Systems

الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::7fc77122741bafe82a1f72aecf7cc469Test
https://doi.org/10.1093/bib/bbac142Test

المؤلفون: Josephine Dannersø Nissen, Sean Hansen, Poul Nissen, Esben M. Quistgaard

المصدر: Quistgaard, E M H, Nissen, J D, Hansen, S & Nissen, P 2021, ' Mind the gap: molecular architecture of the axon initial segment – from fold prediction to a mechanistic model of function? ', Journal of Molecular Biology, vol. 433, no. 20, 167176 . https://doi.org/10.1016/j.jmb.2021.167176Test

مصطلحات موضوعية: Models, Molecular, Fold prediction, Computer science, Protein Conformation, Action Potentials, Domain (software engineering), voltage-gated ion channels, axon initial segment (AIS), Structural Biology, Animals, Humans, Cytoskeleton, Molecular Biology, Axon Initial Segment, action potentials, ankyrin-spectrin, Neurons, Voltage-gated ion channel, Membrane Proteins, membrane ultrastructure, Protein composition, Axon initial segment, Cytoskeletal Proteins, Membrane protein, Neuroscience, Function (biology)

وصف الملف: application/pdf

الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::042b411066ea59b1b0ac717c201422b2Test
https://pure.au.dk/portal/da/publications/mind-the-gapTest(d1a1977b-3910-4a10-87b3-af8214539782).html

المؤلفون: Wayland Yeung, Rahil Taujale, Zhongliang Zhou, Kelley W. Moremen, Natarajan Kannan, Sheng Li

مصطلحات موضوعية: Fold prediction, biology, business.industry, Computer science, Deep learning, Fold (geology), Computational biology, Convolutional neural network, Glycosyltransferase, biology.protein, Artificial intelligence, business, Protein secondary structure, Function (biology), Sequence (medicine)

الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_________::329b08e9b09885492a6f7d6551882ec5Test
https://doi.org/10.1101/2021.07.05.451183Test

المؤلفون: Vytautas Gapsys, Martin Werner, Bert L. de Groot

المصدر: Journal of Physical Chemistry Letters
The Journal of Physical Chemistry Letters

مصطلحات موضوعية: 0301 basic medicine, chemistry.chemical_classification, Nuclease, Letter, Fold prediction, biology, Chemistry, Mutant, Computational biology, Molecular Dynamics Simulation, Protein superfamily, 010402 general chemistry, 01 natural sciences, 0104 chemical sciences, Amino acid, 03 medical and health sciences, 030104 developmental biology, Protein stability, Protein structure, Mutation, biology.protein, Thermodynamics, General Materials Science, Amino Acids, Physical and Theoretical Chemistry

وصف الملف: application/pdf

الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::7930e4dab93ed6a3cc13bce4dbd6e6aaTest
https://hdl.handle.net/21.11116/0000-0009-5A68-E21.11116/0000-0009-5A6B-BTest