المؤلفون: Bearnot, Courtney J, Mbong, Eta N, Muhayangabo, Rigo F, Laghari, Razia, Butler, Kelsey M., Gainey, Monique, Perera, Shiromi M, Michelow, Ian C, Tang, Oliver Y, Levine, Adam C, Colubri, Andrés, Aluisio, Adam R

المساهمون: Genomics and Computational Biology, Morningside Graduate School of Biomedical Sciences, Program in Bioinformatics and Integrative Biology, Kelsey Butler

المصدر: Open forum infectious diseases ; 11 ; 2 ; ofad689 ; United States

مصطلحات موضوعية: Ebola virus disease, biomarker, humanitarian response, machine learning, point-of-care testing

العلاقة: Open Forum Infectious Diseases; https://doi.org/10.1093/ofid/ofad689Test; Bearnot CJ, Mbong EN, Muhayangabo RF, Laghari R, Butler K, Gainey M, Perera SM, Michelow IC, Tang OY, Levine AC, Colubri A, Aluisio AR. Derivation and Internal Validation of a Mortality Prognostication Machine Learning Model in Ebola Virus Disease Based on Iterative Point-of-Care Biomarkers. Open Forum Infect Dis. 2024 Jan 5;11(2):ofad689. doi:10.1093/ofid/ofad689. PMID: 38379568; PMCID: PMC10878059.; http://hdl.handle.net/20.500.14038/53261Test

الإتاحة: https://doi.org/10.1093/ofid/ofad689Test
https://doi.org/20.500.14038/53261Test
https://hdl.handle.net/20.500.14038/53261Test

المؤلفون: Levine, Zoë C, Sene, Aita, Mkandawire, Winnie, Deme, Awa B, Ndiaye, Tolla, Sy, Mouhamad, Gaye, Amy, Diedhiou, Younouss, Mbaye, Amadou M, Ndiaye, Ibrahima M, Gomis, Jules, Ndiop, Médoune, Sene, Doudou, Faye Paye, Marietou, MacInnis, Bronwyn L, Schaffner, Stephen F, Park, Daniel J, Badiane, Aida S, Colubri, Andrés, Ndiaye, Mouhamadou, Sy, Ngayo, Sabeti, Pardis C, Ndiaye, Daouda, Siddle, Katherine J

المساهمون: Genomics and Computational Biology, Morningside Graduate School of Biomedical Sciences, Winnie Mkandawire

المصدر: Nature communications ; 15 ; 1 ; 747 ; United States ; England

مصطلحات موضوعية: Genomics, Infectious diseases, Microbial genetics

العلاقة: Nature Communications; https://doi.org/10.1038/s41467-024-44800-7Test; Levine ZC, Sene A, Mkandawire W, Deme AB, Ndiaye T, Sy M, Gaye A, Diedhiou Y, Mbaye AM, Ndiaye IM, Gomis J, Ndiop M, Sene D, Faye Paye M, MacInnis BL, Schaffner SF, Park DJ, Badiane AS, Colubri A, Ndiaye M, Sy N, Sabeti PC, Ndiaye D, Siddle KJ. Investigating the etiologies of non-malarial febrile illness in Senegal using metagenomic sequencing. Nat Commun. 2024 Jan 25;15(1):747. doi:10.1038/s41467-024-44800-7. PMID: 38272885; PMCID: PMC10810818.; http://hdl.handle.net/20.500.14038/53099Test

الإتاحة: https://doi.org/10.1038/s41467-024-44800-7Test
https://doi.org/20.500.14038/53099Test
https://hdl.handle.net/20.500.14038/53099Test

المؤلفون: Colubri, Andres, Yadav, Kailash, Jha, Abhishek, Sabeti, Pardis C.

مصطلحات موضوعية: Statistics - Applications, Quantitative Biology - Populations and Evolution, Statistics - Computation

الوصول الحر: http://arxiv.org/abs/2006.16761Test

المؤلفون: Machoko, Munashe M P, Dong, Yinan, Grozdani, Andonaq, Hong, Hung, Oliver, Elizabeth, Hyle, Emily P, Ryan, Edward T, Colubri, Andrés, LaRocque, Regina C

المساهمون: Microbiology and Physiological Systems, Program in Bioinformatics and Integrative Biology

المصدر: Journal of travel medicine ; England

مصطلحات موضوعية: mobile app, travel

العلاقة: Journal of Travel Medicine; https://doi.org/10.1093/jtm/taad089Test; Machoko MMP, Dong Y, Grozdani A, Hong H, Oliver E, Hyle EP, Ryan ET, Colubri A, LaRocque RC. Knowledge, attitudes and practices regarding the use of mobile travel health apps. J Travel Med. 2023 Jul 6:taad089. doi:10.1093/jtm/taad089. Epub ahead of print. PMID: 37410376.; http://hdl.handle.net/20.500.14038/52417Test

الإتاحة: https://doi.org/10.1093/jtm/taad089Test
https://doi.org/20.500.14038/52417Test
https://hdl.handle.net/20.500.14038/52417Test

المؤلفون: Adam, Carole, Taillandier, Franck, Biré, Léo, Phung, Quynh, Nga, Phung, Diep, Anh, Taillandier, Patrick, Braz, Luiz Fernando, Sichman, Jaime Simão, Brugière, Arthur, Nguyen-Ngoc, Doanh, Drogoul, Alexis, Ferrer, Eduardo, Castello, Alonso Pastor, Luis, Alberto, Grignard, Arnaud, Chapuis, Kevin, da Hora, Nerian, Evangelista Do Vale, Jôine Cariele, Melo, Gustavo, Bonnet, Marie-Paule, Le Page, Christophe, Cohen, Jonathan, Gil, Jorge, Rosado, Leonardo, Dinaharison, Jean, Bienvenue, Marilleau, Nicolas, Rakotonirainy, Hasina, Lalaina, Corson, Nathalie, Müller, Jean-Pierre, Doussin, Benoît, Amblard, Frédéric, Kaddoum, Elsy, Gaudou, Benoit, Verstaevel, Nicolas, Sabbadin, Régis, Glass, Ayse, Baddam, Pramod, Sanchez Figueroa, Mariela, Rossana, Noennig, Joerg, Grosjean, Lucas, Philippe, Laurent, Nguyen, Huu-Tri, Kesamoon, Chainarong, Boonprasurt, Prachya, Korbmacher, Raphael, Tordeux, Antoine, Li, Chance Jiajie, Qian, Kejiang, Zhang, Yan, Larson, Kent, Gao, Jin, Tang, Ziyi, Tepool, Trent, Rose, Hiromu, Ryan, Iruretagoyena, Maitane, Laatabi, Ahmed, Hanachi, Chihab, Stolf, Patricia, Richa, Aurélien, Laclef, Ellen, Debus, Nathalie, González García, Eliel, Lurette, Amandine, Leitzke, Bruna S., Adamatti, Diana Francisca, Loup-Hadamard, Flavien, Becu, Nicolas, Flavoni, Simona, Mkandawire, Winnie, Butler, Kelsey, Varilly, Patrick, Moshiri, Niema, Colubri, Andrés, Moatty, Annabelle, Moreno, Janwar, Nabil, Sandra, Huraux, Thomas, Camus, Benjamin, Boulisset, Valentin, Ouachene, Naomi, Bessard, Laurent, Daubos, Thierry, Poisvert, Rémi, Neuwirth, Christian, Niane, Papa, Massar, Gaye, Amadou Thierno, Martiny, Nadège, Roucou, Pascal, Palomo Briones, Gamaliel, A., Padilla-Garcia, Raquel, Edith, Padilla-Lepe, Alejandro, Siller, Mario, Gamboa-Gonzalez, Mayra, Eugenia, Sadou, Loïc, Couture, Stéphane, Thomopoulos, Rallou, Coretti-Sanchez, Naroa, Mugica, Juan, Saveant, Damien, Guimont, Mathieu, Darcel, Nicolas, N., Scriban, Arthur, Delay, Etienne, Stark, Fabien, Salgado, Paulo, Sklab, Youcef, Sousa, Deborah, Coelho, Cassio, Alves, Conceição, Ralha, Celia, Szarejko, Maciej, Szurlej, Mikołaj, Dang, Huu-Tu, Vinyals, Meritxell, Lesquoy, Baptiste

المساهمون: Laboratoire d'Informatique de Grenoble (LIG), Centre National de la Recherche Scientifique (CNRS)-Université Grenoble Alpes (UGA)-Institut polytechnique de Grenoble - Grenoble Institute of Technology (Grenoble INP ), Université Grenoble Alpes (UGA), Risques, Ecosystèmes, Vulnérabilité, Environnement, Résilience (RECOVER), Aix Marseille Université (AMU)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Unité de modélisation mathématique et informatique des systèmes complexes Bondy (UMMISCO), Université Gaston Berger de Saint-Louis Sénégal (UGB)-Université de Yaoundé I (UY1)-Institut de la francophonie pour l'informatique-Université Cadi Ayyad Marrakech (UCA)-Sorbonne Université (SU)-Institut de Recherche pour le Développement (IRD France-Nord )-Université Cheikh Anta Diop de Dakar Sénégal (UCAD), Thuyloi University, Unité de Mathématiques et Informatique Appliquées de Toulouse (MIAT INRAE), Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Escola Politecnica da Universidade de Sao Paulo Sao Paulo, MIT media Lab, Massachusetts Institute of Technology (MIT), MIT Institute for Data, Systems, and Society Cambridge, MA (IDSS), Laboratoire International de Recherche sur les Images et la Scénographie (LIRIS), Université Sorbonne Nouvelle - Paris 3, UMR 228 Espace-Dev, Espace pour le développement, Institut de Recherche pour le Développement (IRD)-Université de Perpignan Via Domitia (UPVD)-Avignon Université (AU)-Université de La Réunion (UR)-Université de la Nouvelle-Calédonie (UNC)-Université de Guyane (UG)-Université des Antilles (UA)-Université de Montpellier (UM), Universidade de Brasilia Brasília (UnB), Universidade Federal de Ouro Preto (UFOP), Savoirs, ENvironnement et Sociétés (SENS), Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Université Paul-Valéry - Montpellier 3 (UPVM)-Institut de Recherche pour le Développement (IRD), Département Environnements et Sociétés (Cirad-ES), Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad), Chalmers University of Technology Gothenburg, Sweden, Université de Fianarantsoa, Laboratoire de Mathématiques Appliquées du Havre (LMAH), Université Le Havre Normandie (ULH), Normandie Université (NU)-Normandie Université (NU), Laboratoire Interdisciplinaire de Recherches « Sociétés, Sensibilités, Soin » (LIR3S), Université de Bourgogne (UB)-Centre National de la Recherche Scientifique (CNRS), Systèmes Multi-Agents Coopératifs (IRIT-SMAC), Institut de recherche en informatique de Toulouse (IRIT), Université Toulouse Capitole (UT Capitole), Université de Toulouse (UT)-Université de Toulouse (UT)-Université Toulouse - Jean Jaurès (UT2J), Université de Toulouse (UT)-Université Toulouse III - Paul Sabatier (UT3), Université de Toulouse (UT)-Centre National de la Recherche Scientifique (CNRS)-Institut National Polytechnique (Toulouse) (Toulouse INP), Université de Toulouse (UT)-Toulouse Mind & Brain Institut (TMBI), Université Toulouse - Jean Jaurès (UT2J), Université de Toulouse (UT)-Université de Toulouse (UT)-Université Toulouse III - Paul Sabatier (UT3), Université de Toulouse (UT)-Université Toulouse Capitole (UT Capitole), Université de Toulouse (UT), Université Toulouse III - Paul Sabatier (UT3), HafenCity Universität Hamburg (HCU), Zentrum fur Informationsdienste und Hochlesitungsrechnen (ZIH TU Dresden), Technische Universität Dresden = Dresden University of Technology (TU Dresden), Digital City Science of HafenCity University (DCS HCU), Franche-Comté Électronique Mécanique, Thermique et Optique - Sciences et Technologies (UMR 6174) (FEMTO-ST), Université de Technologie de Belfort-Montbeliard (UTBM)-Ecole Nationale Supérieure de Mécanique et des Microtechniques (ENSMM)-Centre National de la Recherche Scientifique (CNRS)-Université de Franche-Comté (UFC), Université Bourgogne Franche-Comté COMUE (UBFC)-Université Bourgogne Franche-Comté COMUE (UBFC), Thammasat Business School, Thammasat University (TU), University of Wuppertal, Tongji-MIT City Science Lab, Shanghai, MIT Department of Architecture, Harvard University, Système d’exploitation, systèmes répartis, de l’intergiciel à l’architecture (IRIT-SEPIA), Systèmes d'élevage méditerranéens et tropicaux (UMR SELMET), Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Institut Agro Montpellier, Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro), Federal University of Rio Grande do Sul (UFRGS), LIttoral ENvironnement et Sociétés (LIENSs), La Rochelle Université (ULR)-Centre National de la Recherche Scientifique (CNRS), University of Massachusetts Medical School Worcester (UMASS), University of Massachusetts System (UMASS), Broad Institute Cambridge

المصدر: GAMA days 2022 ; https://ird.hal.science/ird-04179579Test ; GAMA days 2022, 2022

مصطلحات موضوعية: Multi-agent, Modelling & simulation, Gama, Agent based modeling, [INFO.INFO-MA]Computer Science [cs]/Multiagent Systems [cs.MA], [INFO.EIAH]Computer Science [cs]/Technology for Human Learning, [INFO.INFO-DC]Computer Science [cs]/Distributed, Parallel, and Cluster Computing [cs.DC], [INFO.INFO-MO]Computer Science [cs]/Modeling and Simulation, [MATH.MATH-DS]Mathematics [math]/Dynamical Systems [math.DS], [SDE.ES]Environmental Sciences/Environment and Society, [SHS.SOCIO]Humanities and Social Sciences/Sociology

العلاقة: ird-04179579; https://ird.hal.science/ird-04179579Test; https://ird.hal.science/ird-04179579/documentTest; https://ird.hal.science/ird-04179579/file/GamaDays2022_acts.pdfTest

الإتاحة: https://ird.hal.science/ird-04179579Test
https://ird.hal.science/ird-04179579/documentTest
https://ird.hal.science/ird-04179579/file/GamaDays2022_acts.pdfTest

المؤلفون: Colubri, Andrés

المساهمون: Program in Bioinformatics and Integrative Biology, Department of Microbiology and Physiological Systems

مصطلحات موضوعية: epidemics, outbreaks, pathogens, simulation, mobile apps, Bioinformatics, Computer Sciences, Data Science, Epidemiology

العلاقة: http://hdl.handle.net/20.500.14038/46439Test; https://escholarship.umassmed.edu/cgi/viewcontent.cgi?article=1069&context=publications&unstamped=1Test; https://escholarship.umassmed.edu/publications/46Test; publications/46

الإتاحة: https://doi.org/10.13028/1q68-y106Test
https://doi.org/20.500.14038/46439Test
https://hdl.handle.net/20.500.14038/46439Test
https://escholarship.umassmed.edu/cgi/viewcontent.cgi?article=1069&context=publications&unstamped=1Test
https://escholarship.umassmed.edu/publications/46Test

المؤلفون: Levine, Zoë C, Sene, Aita, Mkandawire, Winnie, Deme, Awa B, Ndiaye, Tolla, Sy, Mouhamad, Gaye, Amy, Diedhiou, Younouss, Mbaye, Amadou M, Ndiaye, Ibrahima, Gomis, Jules, Ndiop, Médoune, Sene, Doudou, Paye, Marietou Faye, MacInnis, Bronwyn, Schaffner, Stephen F, Park, Daniel J, Badiane, Aida S, Colubri, Andrés, Ndiaye, Mouhamadou, Sy, Ngayo, Sabeti, Pardis C, Ndiaye, Daouda, Siddle, Katherine J

المساهمون: Microbiology and Physiological Systems, Program in Bioinformatics and Integrative Biology, Winnie Mkandawire

المصدر: medRxiv : the preprint server for health sciences ; United States

مصطلحات موضوعية: Infectious Diseases (except HIV/AIDS), non-malarial febrile illness (NMFI), diagnosis

العلاقة: medRxiv; https://doi.org/10.1101/2023.08.24.23294564Test; Levine ZC, Sene A, Mkandawire W, Deme AB, Ndiaye T, Sy M, Gaye A, Diedhiou Y, Mbaye AM, Ndiaye I, Gomis J, Ndiop M, Sene D, Paye MF, MacInnis B, Schaffner SF, Park DJ, Badiane AS, Colubri A, Ndiaye M, Sy N, Sabeti PC, Ndiaye D, Siddle KJ. Improving diagnosis of non-malarial fevers in Senegal: Borrelia and the contribution of tick-borne bacteria. medRxiv [Preprint]. 2023 Aug 25:2023.08.24.23294564. doi:10.1101/2023.08.24.23294564. PMID: 37662407; PMCID: PMC10473814.; http://hdl.handle.net/20.500.14038/52658Test; medRxiv : the preprint server for health sciences

الإتاحة: https://doi.org/10.1101/2023.08.24.23294564Test
https://doi.org/20.500.14038/52658Test
https://hdl.handle.net/20.500.14038/52658Test

المؤلفون: Pratt, Henry E., Andrews, Gregory, Shedd, Nicole, Phalke, Nishigandha, Li, Tongxin, Pampari, Anusri, Jensen, Matthew, Wen, Cindy, Consortium, PsychENCODE, Gandal, Michael J., Geschwind, Daniel H., Gerstein, Mark, Moore, Jill, Kundaje, Anshul, Colubri, Andrés, Weng, Zhiping

المصدر: Science Advances ; volume 10, issue 21 ; ISSN 2375-2548

الإتاحة: https://doi.org/10.1126/sciadv.adj4452Test

المؤلفون: Genisca, Alicia E, Butler, Kelsey M., Gainey, Monique, Chu, Tzu-Chun, Huang, Lawrence, Mbong, Eta N, Kennedy, Stephen B, Laghari, Razia, Nganga, Fiston, Muhayangabo, Rigobert F, Vaishnav, Himanshu, Perera, Shiromi M, Adeniji, Moyinoluwa, Levine, Adam C, Michelow, Ian C, Colubri, Andrés

المساهمون: Microbiology and Physiological Systems, Morningside Graduate School of Biomedical Sciences, Program in Bioinformatics and Integrative Biology

المصدر: PLoS neglected tropical diseases ; 16 ; 10 ; e0010789 ; United States

مصطلحات موضوعية: Pediatrics, Africa, Biomarkers, Forecasting, Medical risk factors, Hemorrhage, Myalgia, Ebola hemorrhagic fever

العلاقة: PLOS Neglected Tropical Diseases; https://doi.org/10.1371/journal.pntd.0010789Test; Genisca AE, Butler K, Gainey M, Chu TC, Huang L, Mbong EN, Kennedy SB, Laghari R, Nganga F, Muhayangabo RF, Vaishnav H, Perera SM, Adeniji M, Levine AC, Michelow IC, Colubri A. Constructing, validating, and updating machine learning models to predict survival in children with Ebola Virus Disease. PLoS Negl Trop Dis. 2022 Oct 12;16(10):e0010789. doi:10.1371/journal.pntd.0010789. PMID: 36223331; PMCID: PMC9555640.; http://hdl.handle.net/20.500.14038/51452Test

الإتاحة: https://doi.org/10.1371/journal.pntd.0010789Test
https://doi.org/20.500.14038/51452Test
https://hdl.handle.net/20.500.14038/51452Test

المؤلفون: Petros, Brittany A, Paull, Jillian S, Tomkins-Tinch, Christopher H, Loftness, Bryn C, DeRuff, Katherine C, Nair, Parvathy, Gionet, Gabrielle L, Benz, Aaron, Brock-Fisher, Taylor, Hughes, Michael, Yurkovetskiy, Leonid, Mulaudzi, Shandukani, Leenerman, Emma, Nyalile, Thomas, Moreno, Gage K, Specht, Ivan, Sani, Kian, Adams, Gordon, Babet, Simone V, Baron, Emily, Blank, Jesse T, Boehm, Chloe, Botti-Lodovico, Yolanda, Brown, Jeremy, Buisker, Adam R, Burcham, Timothy, Chylek, Lily, Cronan, Paul, Dauphin, Ann, Desreumaux, Valentine, Doss, Megan, Flynn, Belinda, Gladden-Young, Adrianne, Glennon, Olivia, Harmon, Hunter D, Hook, Thomas V, Kary, Anton, King, Clay, Loreth, Christine, Marrs, Libby, McQuade, Kyle J, Milton, Thorsen T, Mulford, Jada M, Oba, Kyle, Pearlman, Leah, Schifferli, Mark, Schmidt, Madelyn J, Tandus, Grace M, Tyler, Andy, Vodzak, Megan E, Krohn Bevill, Kelly, Colubri, Andrés, MacInnis, Bronwyn L, Ozsoy, A Zeynep, Parrie, Eric, Sholtes, Kari, Siddle, Katherine J, Fry, Ben, Luban, Jeremy, Park, Daniel J, Marshall, John, Bronson, Amy, Schaffner, Stephen F, Sabeti, Pardis C

المساهمون: Biochemistry and Molecular Biotechnology, Morningside Graduate School of Biomedical Sciences, Program in Bioinformatics and Integrative Biology, Program in Molecular Medicine

المصدر: Med (New York, N.Y.) ; United States

مصطلحات موضوعية: Foundational research, SARS-CoV-2, genomic epidemiology, lineage characterization, multimodal surveillance, risk identification and mitigation, social network analysis, university outbreak response, viral genomic sequencing, wastewater sequencing methods, wastewater surveillance

العلاقة: Med; https://doi.org/10.1016/j.medj.2022.09.003Test; Petros BA, Paull JS, Tomkins-Tinch CH, Loftness BC, DeRuff KC, Nair P, Gionet GL, Benz A, Brock-Fisher T, Hughes M, Yurkovetskiy L, Mulaudzi S, Leenerman E, Nyalile T, Moreno GK, Specht I, Sani K, Adams G, Babet SV, Baron E, Blank JT, Boehm C, Botti-Lodovico Y, Brown J, Buisker AR, Burcham T, Chylek L, Cronan P, Dauphin A, Desreumaux V, Doss M, Flynn B, Gladden-Young A, Glennon O, Harmon HD, Hook TV, Kary A, King C, Loreth C, Marrs L, McQuade KJ, Milton TT, Mulford JM, Oba K, Pearlman L, Schifferli M, Schmidt MJ, Tandus GM, Tyler A, Vodzak ME, Krohn Bevill K, Colubri A, MacInnis BL, Ozsoy AZ, Parrie E, Sholtes K, Siddle KJ, Fry B, Luban J, Park DJ, Marshall J, Bronson A, Schaffner SF, Sabeti PC. Multimodal surveillance of SARS-CoV-2 at a university enables development of a robust outbreak response framework. Med (N Y). 2022 Sep 19:S2666-6340(22)00404-4. doi:10.1016/j.medj.2022.09.003. Epub ahead of print. PMID: 36198312; PMCID: PMC9482833.; http://hdl.handle.net/20.500.14038/51437Test; Med (New York, N.Y.)

الإتاحة: https://doi.org/10.1016/j.medj.2022.09.003Test
https://doi.org/20.500.14038/51437Test
https://hdl.handle.net/20.500.14038/51437Test