دورية أكاديمية
FastRemap: a tool for quickly remapping reads between genome assemblies
| العنوان: | FastRemap: a tool for quickly remapping reads between genome assemblies |
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| المؤلفون: | Kim, J. S., Firtina, C., Cavlak, M. B., Cali, D. S., Alkan, Can, Mutlu, Onur |
| المساهمون: | Alkan, Can, Mutlu, Onur |
| المصدر: | Bioinformatics |
| بيانات النشر: | Oxford University Press |
| سنة النشر: | 2022 |
| المجموعة: | Bilkent University: Institutional Repository |
| الوصف: | Motivation: A genome read dataset can be quickly and efficiently remapped from one reference to another similar reference (e.g., between two reference versions or two similar species) using a variety of tools, e.g., the commonly used CrossMap tool. With the explosion of available genomic datasets and references, high-performance remapping tools will be even more important for keeping up with the computational demands of genome assembly and analysis. Results: We provide FastRemap, a fast and efficient tool for remapping reads between genome assemblies. FastRemap provides up to a 7.82 speedup (6.47, on average) and uses as low as 61.7% (80.7%, on average) of the peak memory consumption compared to the state-of-the-art remapping tool, CrossMap. |
| نوع الوثيقة: | article in journal/newspaper |
| وصف الملف: | application/pdf |
| اللغة: | English |
| تدمد: | 1367-4803 1367-4811 |
| العلاقة: | https://www.doi.org/10.1093/bioinformatics/btac554Test; http://hdl.handle.net/11693/111254Test |
| DOI: | 10.1093/bioinformatics/btac554 |
| الإتاحة: | https://doi.org/10.1093/bioinformatics/btac554Test http://hdl.handle.net/11693/111254Test |
| رقم الانضمام: | edsbas.8F5FD0C8 |
| قاعدة البيانات: | BASE |
Full Text Finder | تدمد: | 13674803 13674811 |
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| DOI: | 10.1093/bioinformatics/btac554 |