المؤلفون: Olson, Nathan D., Wagner, Justin, McDaniel, Jennifer, Stephens, Sarah H., Westreich, Samuel T., Prasanna, Anish G., Johanson, Elaine, Boja, Emily, Maier, Ezekiel J., Serang, Omar, Jáspez, David, Lorenzo-Salazar, José M., Muñoz-Barrera, Adrián, Rubio-Rodríguez, Luis A., Flores, Carlos, Kyriakidis, Konstantinos, Malousi, Andigoni, Shafin, Kishwar, Pesout, Trevor, Jain, Miten, Paten, Benedict, Chang, Pi-Chuan, Kolesnikov, Alexey, Nattestad, Maria, Baid, Gunjan, Goel, Sidharth, Yang, Howard, Carroll, Andrew, Eveleigh, Robert, Bourgey, Mathieu, Bourque, Guillaume, Li, Gen, MA, ChouXian, Tang, LinQi, DU, YuanPing, Zhang, ShaoWei, Morata, Jordi, Tonda, Raúl, Parra, Genís, Trotta, Jean-Rémi, Brueffer, Christian, Demirkaya-Budak, Sinem, Kabakci-Zorlu, Duygu, Turgut, Deniz, Kalay, Özem, Budak, Gungor, Narcı, Kübra, Arslan, Elif, Brown, Richard, Johnson, Ivan J., Dolgoborodov, Alexey, Semenyuk, Vladimir, Jain, Amit, Tetikol, H. Serhat, Jain, Varun, Ruehle, Mike, Lajoie, Bryan, Roddey, Cooper, Catreux, Severine, Mehio, Rami, Ahsan, Mian Umair, Liu, Qian, Wang, Kai, Sahraeian, Sayed Mohammad Ebrahim, Fang, Li Tai, Mohiyuddin, Marghoob, Hung, Calvin, Jain, Chirag, Feng, Hanying, Li, Zhipan, Chen, Luoqi, Sedlazeck, Fritz J., Zook, Justin M

المصدر: Cell Genomics. 2(5):1-12

مصطلحات موضوعية: DNA, variant, shot-read sequencing, long-read sequencing, benchmark, Naturvetenskap, Biologi, Bioinformatik och systembiologi, Natural Sciences, Biological Sciences, Bioinformatics and Systems Biology, Data- och informationsvetenskap (Datateknik), Bioinformatik (beräkningsbiologi), Computer and Information Science, Bioinformatics (Computational Biology), Medicin och hälsovetenskap, Medicinska och farmaceutiska grundvetenskaper, Medicinsk genetik, Medical and Health Sciences, Basic Medicine, Medical Genetics

الوصول الحر: https://lup.lub.lu.se/record/321a29e2-0c7d-4659-90cc-e5a073131432Test
http://dx.doi.org/10.1016/j.xgen.2022.100129Test

المؤلفون: Zou, Trudy, Sethi, Rahil, Wang, Jiefei, Budak, Gungor, Chandran, Uma, John, Ivy, Watters, Rebecca, Weiss, Kurt

المصدر: Frontiers in Molecular Medicine ; volume 3 ; ISSN 2674-0095

الإتاحة: https://doi.org/10.3389/fmmed.2023.1152550Test

المؤلفون: Tetikol, H. Serhat, Turgut, Deniz, Narci, Kubra, Budak, Gungor, Kalay, Ozem, Arslan, Elif, Demirkaya-Budak, Sinem, Dolgoborodov, Alexey, Kabakci-Zorlu, Duygu, Semenyuk, Vladimir, Jain, Amit, Davis-Dusenbery, Brandi N.

المصدر: Nature Communications ; volume 13, issue 1 ; ISSN 2041-1723

مصطلحات موضوعية: General Physics and Astronomy, General Biochemistry, Genetics and Molecular Biology, General Chemistry, Multidisciplinary

الإتاحة: https://doi.org/10.1038/s41467-022-31724-3Test
https://www.nature.com/articles/s41467-022-31724-3.pdfTest
https://www.nature.com/articles/s41467-022-31724-3Test

المؤلفون: Olson, Nathan D., Wagner, Justin, McDaniel, Jennifer, Stephens, Sarah H., Westreich, Samuel T., Prasanna, Anish G., Johanson, Elaine, Maier, Ezekiel J., Boja, Emily, Serang, Omar, Jáspez, David, Lorenzo-Salazar, José M., Muñoz-Barrera, Adrián, Rubio-Rodríguez, Luis A., Flores, Carlos, Kyriakidis, Konstantinos, Malousi, Andigoni, Shafin, Kishwar, Pesout, Trevor, Jain, Miten, Paten, Benedict, Chang, Pi-Chuan, Kolesnikov, Alexey, Nattestad, Maria, Baid, Gunjan, Goel, Sidharth, Yang, Howard, Carroll, Andrew, Eveleigh, Robert, Bourgey, Mathieu, Bourque, Guillaume, Li, Gen, MA, ChouXian, Tang, LinQi, DU, YuanPing, Zhang, ShaoWei, Morata, Jordi, Tonda, Raúl, Parra, Genís, Trotta, Jean-Rémi, Brueffer, Christian, Demirkaya-Budak, Sinem, Kabakci-Zorlu, Duygu, Turgut, Deniz, Kalay, Özem, Budak, Gungor, Narcı, Kübra, Arslan, Elif, Brown, Richard, Johnson, Ivan J., Dolgoborodov, Alexey, Semenyuk, Vladimir, Jain, Amit, Tetikol, H. Serhat, Jain, Varun, Ruehle, Mike, Lajoie, Bryan, Roddey, Cooper, Catreux, Severine, Mehio, Rami, Ahsan, Mian Umair, Liu, Qian, Wang, Kai, Sahraeian, Sayed Mohammad Ebrahim, Fang, Li Tai, Mohiyuddin, Marghoob, Hung, Calvin, Jain, Chirag, Feng, Hanying, Li, Zhipan, Chen, Luoqi, Sedlazeck, Fritz J., Zook, Justin M

مصطلحات موضوعية: DNA, variant, short-read sequencing, long-read sequencing, benchmark, Naturvetenskap, Biologi, Bioinformatik och systembiologi, Natural Sciences, Biological Sciences, Bioinformatics and Systems Biology, Data- och informationsvetenskap (Datateknik), Bioinformatik (beräkningsbiologi), Computer and Information Science, Bioinformatics (Computational Biology), Medicin och hälsovetenskap, Medicinska och farmaceutiska grundvetenskaper, Medicinsk genetik, Medical and Health Sciences, Basic Medicine, Medical Genetics

الوصول الحر: https://lup.lub.lu.se/record/5798e0a5-a5ee-4d5f-87ed-c78692ff514cTest
http://dx.doi.org/10.1101/2020.11.13.380741Test

المؤلفون: Budak, Gungor, Dash, Soma, Srivastava, Rajneesh, Lachke, Salil A., Janga, Sarath Chandra

المساهمون: National Institute of General Medical Sciences, National Institutes of Health, National Eye Institute

المصدر: Experimental Eye Research ; volume 168, page 57-68 ; ISSN 0014-4835

مصطلحات موضوعية: Cellular and Molecular Neuroscience, Sensory Systems, Ophthalmology

الإتاحة: https://doi.org/10.1016/j.exer.2018.01.009Test
https://api.elsevier.com/content/article/PII:S0014483516305607?httpAccept=text/xmlTest
https://api.elsevier.com/content/article/PII:S0014483516305607?httpAccept=text/plainTest

المؤلفون: Budak, Gungor, Srivastava, Rajneesh, Janga, Sarath Chandra

المساهمون: BioHealth Informatics, School of Informatics and Computing

المصدر: PMC

مصطلحات موضوعية: CLIP (crosslinking and immunoprecipitation), RNA-binding proteins, Functional enrichment, Gene set enrichment, Genotype–phenotype, Post-transcriptional networks

وصف الملف: application/pdf

العلاقة: RNA; Budak, G., Srivastava, R., & Janga, S. C. (2017). Seten: a tool for systematic identification and comparison of processes, phenotypes, and diseases associated with RNA-binding proteins from condition-specific CLIP-seq profiles. RNA (New York, N.Y.), 23(6), 836-846.; https://hdl.handle.net/1805/18371Test

الإتاحة: https://hdl.handle.net/1805/18371Test

المؤلفون: Srivastava, Rajneesh, Budak, Gungor, Dash, Soma, Lachke, Salil A., Janga, Sarath Chandra

المساهمون: BioHealth Informatics, School of Informatics and Computing

المصدر: PMC

مصطلحات موضوعية: Transcriptome analysis, Lens, RNA sequencing

وصف الملف: application/pdf

العلاقة: Scientific Reports; Srivastava, R., Budak, G., Dash, S., Lachke, S. A., & Janga, S. C. (2017). Transcriptome analysis of developing lens reveals abundance of novel transcripts and extensive splicing alterations. Scientific Reports, 7. https://doi.org/10.1038/s41598-017-10615-4Test; https://hdl.handle.net/1805/15379Test

الإتاحة: https://hdl.handle.net/1805/15379Test

المؤلفون: Hill, Steven M., Heiser, Laura M., Cokelaer, Thomas, Unger, Michael, Nesser, Nicole K., Carlin, Daniel E., Zhang, Yang, Sokolov, Artem, Paull, Evan O., Wong, Chris K., Graim, Kiley, Bivol, Adrian, Wang, Haizhou, Zhu, Fan, Afsari, Bahman, Danilova, Ludmila V., Favorov, Alexander V., Lee, Wai Shing, Taylor, Dane, Hu, Chenyue W., Long, Byron L., Noren, David P., Bisberg, Alexander J., Mills, Gordon B., Gray, Joe W., Kellen, Michael, Norman, Thea, Friend, Stephen, Qutub, Amina A., Fertig, Elana J., Guan, Yuanfang, Song, Mingzhou, Stuart, Joshua M., Spellman, Paul T., Koeppl, Heinz, Stolovitzky, Gustavo, Saez-Rodriguez, Julio, Mukherjee, Sach, Guinney, Justin, Hodgson, Jay, Hoff, Bruce, Al-Ouran, Rami, Bunescu, Razvan, Li, Yichao, Liang, Xiaoyu, Welch, Lonnie, Anton, Bernat, Bonet, Jaume, Garcia-Garcia, Javier, Oliva, Baldo, Planas-Iglesias, Joan, Poglayen, Daniel, Arodz, Tomasz, Gao, Xi, Slawek, Janusz, Askari Sichani, Omid, Daneshmand, Seyed-Mohammad-Hadi, Jalili, Mahdi, Bagheri, Neda, Ciaccio, Mark F., Xue, Albert Y., Berlow, Noah, Haider, Saad, Pal, Ranadip, Wan, Qian, Bohler, Anwesha, Budak, Gungor, Evelo, Chris, Kutmon, Martina, Bonneau, Richard, Hafemeister, Christoph, Müller, Christian Lorenz, Caglar, Mehmet, Cai, Binghuang, Cai, Chunhui, Chen, Luija, Cooper, Gregory, Dutta-Moscato, Joyeeta, Jiang, Xia, Lu, Songjian, Lu, Xinghua, Carlon, Azzurra, Di Camillo, Barbara, Finotello, Francesca, Giaretta, Alberto, Manfrini, Marco, Sambo, Francesco, Sanavia, Tiziana, Toffolo, Gianna Maria, Trifoglio, Emanuele, Creighton, Chad J., de la Fuente, Alberto, Strunz, Sonja, Emmett, Kevin, Fassia, Mohammad-Kasim H., Finkle, Justin D., Wu, Jia J., Gao, Jean, Kang, Mingon, Ghosh, Samik, Hase, Takeshi, Kikuchi, Kaito, Kitano, Hiroaki, Yamanaka, Ryota, Großeholz, Ruth, Hahn, Oliver, Zengerling, Michael, Hsu, Chih Hao, Hu, Ying, Komatsoulis, George, Meerzaman, Daoud, Yan, Chunhua, Huang, Xun, Zi, Zhike, Kacprowski, Tim, Kaderali, Lars, Knapp, Bettina, Matos, Marta R. A., Kannan, Venkateshan, Tegnér, Jesper, Zenil, Hector, Kim, Dong-Chul, Krämer, Andreas, Kursa, Miron Bartosz, Liu, Zhaoqi, Min, Wenwen, Zhang, Shihua, Liu, Yu, Neapolitan, Richard E., Obol Opiyo, Stephen, Palinkas, Aljoscha, Streck, Adam, Thobe, Kirste, Sharifi-Zarchi, Ali, Zairis, Sakellarios

المصدر: Nature methods, 13(4): 310-318

مصطلحات موضوعية: Cancer models, Cellular signalling networks, Systems biology

العلاقة: https://repository.publisso.de/resource/frl:6404384Test; https://doi.org/10.1038/nmeth.3773Test; https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4854847Test/; http://www.nature.com/nmeth/journal/v13/n4/full/nmeth.3773.html?foxtrotcallback=true#supplementary-informationTest

الإتاحة: https://doi.org/10.1038/nmeth.3773Test
https://repository.publisso.de/resource/frl:6404384Test
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4854847Test/
http://www.nature.com/nmeth/journal/v13/n4/full/nmeth.3773.html?foxtrotcallback=true#supplementary-informationTest

المؤلفون: Hashemikhabir, Seyedsasan, Budak, Gungor, Janga, Sarath Chandra

المساهمون: Department of BioHealth Informatics, IU School of Informatics and Computing

المصدر: PMC

مصطلحات موضوعية: Survival, Splicing, Exon expression, Cancer, Posttranscriptional regulation

وصف الملف: application/pdf

العلاقة: Cancer Informatics; Hashemikhabir, S., Budak, G., & Janga, S. C. (2016). ExSurv: A Web Resource for Prognostic Analyses of Exons Across Human Cancers Using Clinical Transcriptomes. Cancer Informatics, 15(Suppl 2), 17–24. http://doi.org/10.4137/CIN.S39367Test; https://hdl.handle.net/1805/12950Test

الإتاحة: https://hdl.handle.net/1805/12950Test

المؤلفون: Budak, Gungor, Ozsoy, Oyku Eren, Aydın Son, Yeşim, Can, Tolga, Tunçbağ, Nurcan

مصطلحات موضوعية: Phosphoproteomic, Network reconstruction, Salmonella infection, Temporal data integration, Pathway analysis

وصف الملف: application/pdf

العلاقة: Budak G., Ozsoy O. E. , Son Y., Can T., Tunçbağ N., "Reconstruction of the temporal signaling network in Salmonella-infected human cells", FRONTIERS IN MICROBIOLOGY, cilt.6, 2015; 84938843817; https://hdl.handle.net/11511/30841Test; WOS:000358717100001

الإتاحة: https://doi.org/10.3389/fmicb.2015.00730Test
https://hdl.handle.net/11511/30841Test