المؤلفون: Britney Ragunton, Steve Van Buskirk, Devin Wakefield, Ninad Ranadive, Andrew Pipathsouk, Baikang Pei, Hong Zhou, Tracy Yamawaki, Mike Berke, Chi-Ming Li, Christopher Hale, Songli Wang, Stuart M. Chambers

الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_________::43ff284e29e4dd26ee34573973b0b1d0Test
https://doi.org/10.1101/2023.03.20.533543Test

المؤلفون: Robert G. Guenette, Seung Wook Yang, Jaeki Min, Baikang Pei, Patrick Ryan Potts

المصدر: Chemical Society reviews. 51(14)

مصطلحات موضوعية: Ubiquitin-Protein Ligases, Proteolysis, General Chemistry, Ligands

الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::811a63bf59a863e0f45bd4bbc852817cTest
https://pubmed.ncbi.nlm.nih.gov/35587208Test

المؤلفون: Fabio C. P. Navarro, Jonathan M. Mudge, S. Mohanan, Adam Frankish, Joel Armstrong, Tiago Grego, Irwin Jungreis, Roderic Guigó, Jinrui Xu, Benedict Paten, Cristina Sisu, Daniel R. Zerbino, Julien Lagarde, Mark Diekhans, José M. González, Michael L. Tress, E. Stapleton, Osagie G. Izuogu, Mark Gerstein, Ian T. Fiddes, Toby Hunt, Sarah Donaldson, Marie Marthe Suner, Fernando Pozo, Andrew D. Yates, S. Carbonell Sala, T. Di Domenico, Matthew Hardy, Barbara Uszczynska-Ratajczak, Fiona Cunningham, Andrew Berry, Anne Parker, Laura Martinez, Alexandra Bignell, Bianca M. Schmitt, Yan Zhang, Jane E. Loveland, Baikang Pei, Jyoti S. Choudhary, F. C. Riera, Paul R. Muir, C. Garcia Giron, Tim Hubbard, Fergal J. Martin, Rory Johnson, Magali Ruffier, If Barnes, James C. Wright, I. Sycheva, Manolis Kellis, Carles Boix, Thibaut Hourlier, Paul Flicek, Maxim Y Wolf, Y. T. Yang, Kerstin Howe

المصدر: Frankish, Adam; Diekhans, Mark; Jungreis, Irwin; Lagarde, Julien; Loveland, Jane E; Mudge, Jonathan M; Sisu, Cristina; Wright, James C; Armstrong, Joel; Barnes, If; Berry, Andrew; Bignell, Alexandra; Boix, Carles; Carbonell Sala, Silvia; Cunningham, Fiona; Di Domenico, Tomás; Donaldson, Sarah; Fiddes, Ian T; García Girón, Carlos; Gonzalez, Jose Manuel; ... (2021). GENCODE 2021. Nucleic acids research, 49(D1), D916-D923. Oxford University Press 10.1093/nar/gkaa1087 <http://dx.doi.org/10.1093/nar/gkaa1087Test>
Nucleic Acids Research

مصطلحات موضوعية: Transcription, Genetic, AcademicSubjects/SCI00010, Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), 610 Medicine & health, Computational biology, Genome browser, Biology, Genome, Mice, 03 medical and health sciences, Annotation, 0302 clinical medicine, Databases, Genetic, Genetics, Database Issue, Animals, Humans, Ensembl, Epidemics, GeneralLiterature_REFERENCE(e.g.,dictionaries,encyclopedias,glossaries), 030304 developmental biology, Internet, 0303 health sciences, SARS-CoV-2, GENCODE, COVID-19, Computational Biology, Molecular Sequence Annotation, Genomics, ComputingMethodologies_PATTERNRECOGNITION, Genome Biology, RNA, Long Noncoding, Pseudogenes, 030217 neurology & neurosurgery, Reference genome

وصف الملف: application/pdf; D916 - D923

الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::749c9a56232ba7da42ed2dcfb66579faTest
https://doi.org/10.1093/nar/gkaa1087Test

المؤلفون: Dmitri D. Pervouchine (Bioinformatics and Genomics Programme, Centre for Genomic Regulation (CRG) and UPF), Sarah Djebali (Bioinformatics and Genomics Programme, Centre for Genomic Regulation (CRG) and UPF), Alessandra Breschi (Bioinformatics and Genomics Programme, Centre for Genomic Regulation (CRG) and UPF), Carrie A. Davis (Functional Genomics Group, Cold Spring Harbor Laboratory), Pablo Prieto Barja (Bioinformatics and Genomics Programme, Centre for Genomic Regulation (CRG) and UPF), Alex Dobin (Functional Genomics Group, Cold Spring Harbor Laboratory), Andrea Tanzer (Department of Theoretical Chemistry, Faculty of Chemistry, University of Vienna), Julien Lagarde (Bioinformatics and Genomics Programme, Centre for Genomic Regulation (CRG) and UPF), Chris Zaleski (Functional Genomics Group, Cold Spring Harbor Laboratory), Lei-Hoon See (Functional Genomics Group, Cold Spring Harbor Laboratory), Meagan Fastuca (Functional Genomics Group, Cold Spring Harbor Laboratory), Jorg Drenkow (Functional Genomics Group, Cold Spring Harbor Laboratory), Huaien Wang (Functional Genomics Group, Cold Spring Harbor Laboratory), Giovanni Bussotti (Bioinformatics and Genomics Programme, Centre for Genomic Regulation (CRG) and UPF), Baikang Pei (Program in Computational Biology and Bioinformatics, Yale University), Suganthi Balasubramanian (Program in Computational Biology and Bioinformatics, Yale University), Jean Monlong (Bioinformatics and Genomics Programme, Centre for Genomic Regulation (CRG) and UPF), Arif Harmanci (Program in Computational Biology and Bioinformatics, Yale University), Mark Gerstein (Program in Computational Biology and Bioinformatics, Yale University), Michael A. Beer (Department of Biomedical Engineering and McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University), Cedric Notredame (Bioinformatics and Genomics Programme, Centre for Genomic Regulation (CRG) and UPF), Roderic Guigó (Bioinformatics and Genomics Programme, Centre for Genomic Regulation (CRG) and UPF), Thomas R. Gingeras (Functional Genomics Group, Cold Spring Harbor Laboratory)

المصدر: Nature Communications

مصطلحات موضوعية: Biological sciences, Evolution, Genetics

وصف الملف: application/pdf

العلاقة: isPartOf:https://phaidra.univie.ac.at/o:243553Test[u:scholar collection]; hdl:11353/10.448413; https://phaidra.univie.ac.at/o:448413Test

الإتاحة: https://doi.org/10.1038/ncomms6903Test
https://phaidra.univie.ac.at/o:448413Test

المؤلفون: Rory Johnson, Fernando Pozo, Andrew D. Yates, Magali Ruffier, Alexandra Bignell, Anne Parker, Adam Frankish, Osagie G. Izuogu, If Barnes, Jose Manuel Gonzalez, Tomás Di Domenico, Irwin Jungreis, Cristina Sisu, Fergal J. Martin, Anne-Maud Ferreira, Paul R. Muir, Benedict Paten, Matthew P. Hardy, Manolis Kellis, Jacqueline Chrast, Jane E. Loveland, Yan Zhang, Michael L. Tress, Fabio C. P. Navarro, Barbara Uszczynska-Ratajczak, Jonathan M. Mudge, Mark Diekhans, Shamika Mohanan, James C. Wright, Fiona Cunningham, Toby Hunt, Baikang Pei, Jinuri Xu, Tim Hubbard, Julien Lagarde, Roderic Guigó, Alexandre Reymond, Silvia Carbonell Sala, Bianca M. Schmitt, Sarah Donaldson, Mark Gerstein, Jyoti S. Choudhary, Eloise Stapleton, Bronwen Aken, Laura Martinez, Tiago Grego, Ian T. Fiddes, Joel Armstrong, Carlos García Girón, Marie-Marthe Suner, Paul Flicek, Andrew Berry, Irina Sycheva, Thibaut Hourlier, Daniel R. Zerbino

المساهمون: Wellcome Trust, European Molecular Biology Organization, NIH - National Human Genome Research Institute (NHGRI) (Estados Unidos), Swiss National Science Foundation

المصدر: Frankish, Adam; Diekhans, Mark; Ferreira, Anne-Maud; Johnson, Rory Baldwin; Jungreis, Irwin; Loveland, Jane; Mudge, Jonathan M; Sisu, Cristina; Wright, James; Armstrong, Joel; Barnes, If; Berry, Andrew; Bignell, Alexandra; Carbonell Sala, Silvia; Chrast, Jacqueline; Cunningham, Fiona; Di Domenico, Tomás; Donaldson, Sarah; Fiddes, Ian T; García Girón, Carlos; ... (2019). GENCODE reference annotation for the human and mouse genomes. Nucleic acids research, 47(D1), D766-D773. Oxford University Press 10.1093/nar/gky955 <http://dx.doi.org/10.1093/nar/gky955Test>
Repisalud
Instituto de Salud Carlos III (ISCIII)
Recercat. Dipósit de la Recerca de Catalunya
instname
Nucleic Acids Research
Nucleic acids research, vol. 47, no. D1, pp. D766-D773

مصطلحات موضوعية: DNA ELEMENTS, GENES, PROTEINS, DATABASE, 610 Medicine & health, Genomics, Computational biology, Biology, LONG NONCODING RNAS, Genome, Mice, 03 medical and health sciences, Annotation, 0302 clinical medicine, Databases, Genetic, PROGRAM, Genetics, Database Issue, Animals, Humans, Ensembl, 030304 developmental biology, Internet, 0303 health sciences, IDENTIFICATION, Genome, Human, GENCODE, Computational Biology, Genome, Human/genetics, Molecular Sequence Annotation, Pseudogenes/genetics, Software, Gene Annotation, PRINCIPAL, ENCYCLOPEDIA, CATALOG, 3. Good health, ComputingMethodologies_PATTERNRECOGNITION, Human genome, Pseudogenes, 030217 neurology & neurosurgery

وصف الملف: application/pdf

الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e181df58a8de4f0403a4a267189a4855Test
https://doi.org/10.1093/nar/gky955Test

المؤلفون: Zhiqin Huang, Pramod K. Srivastava, Song Liu, Jason A. Greenbaum, Dirk Jäger, Jiaqian Wang, Ognjen Milicevic, Willem-Jan Krebber, Barbara Schrörs, Sean Michael Boyle, Michal Bassani-Sternberg, Ana M. Mijalkovic Lazic, Amit A. Lugade, Kristen K. Dang, Han Si, Alessandro Sette, Jeffrey P. Ward, Irsan Kooi, Michael F. Princiotta, Begonya Comin-Anduix, Thierry Schuepbach, Pia Kvistborg, Julia Kodysh, William Chour, Vladimir B. Kovacevic, Jan H. Kessler, Ariella Sasson, Antoni Ribas, Brian Stevenson, Sriram Sridhar, Prateek Tanden, Robert D. Schreiber, Jason Perera, Kathleen C. F. Sheehan, Hira Rizvi, Sachet A. Shukla, Baikang Pei, Han Chang, Bo Li, Ion I. Mandoiu, Cristina Puig-Saus, Beatriz M. Carreno, Si Qiu, Jennifer M. Shelton, Patrick Jongeneel, Qiang Hu, Taha Merghoub, Matthew D. Hellmann, James P. Conway, Francisco Arcila, Ton N. Schumacher, Mathias Vormehr, Christopher A. Morehouse, Patrice Manning, Jonathon Blake, Pornpimol Charoentong, Angela Frentzen, Christopher A. Miller, Michael A. Kuziora, Bin Song, Lei Wei, Martin Löwer, Gabor Bartha, Justin Guinney, Niels Halama, Rolf Hilker, Yinong Sebastian, Veliborka Josipovic, Jason Harris, Geng Liu, Guilhem Richard, Arjun A. Rao, Nikola M. Skundric, Markus Mueller, Daniel K. Wells, Tatiana Shcheglova, Inka Zörnig, Weixuan Fu, John Sidney, Nadine Defranoux, Gabriela Steiner, Joseph D. Szustakowski, Arbel D. Tadmor, Maxim N. Artyomov, Jianmin Wang, George Coukos, Brandon W. Higgs, Milica R. Kojicic, Siranush Sarkizova, Daphne van Beek, Naibo Yang, Robert Ziman, Mignonette H. Macabali, Thomas Yu, Nicolas Guex, Nina Bhardwaj, Lorenzo F. Fanchi, Bjoern Peters, Christian Iseli, Song Wu, Maren Lang, Juliet Forman, Marit M. van Buuren, David Balli, Steven L. C. Ketelaars, Nir Hacohen, Ekaterina Esaulova, Maarten Slagter, Todd Creasy, Robert A. Petit, Yi-Hsiang Hsu, Ravi Gupta, Katie M. Campbell, Pascal Gellert, David Haussler, Jesse M. Zaretsky, Sofie R. Salama, Vanessa M. Hubbard-Lucey, Joel Greshock, Zeynep Kosaloglu Yalcin, Cornelis J. M. Melief, Priyanka Shah, Ioannis Xenarios, Nevena M. Ilic Raicevic, Andrew Lamb, Suchit Jhunjhunwala, Aly A. Khan, David Gfeller, James R. Heath, Richard Chen, Jia M. Chen, Alphonsus H. C. Ng, Elham Sherafat, Ana Belen Blazquez, Leo J. Lee, Beata Berent-Maoz, Cheryl Selinsky, Jasreet Hundal, Eduardo Cortes, Xengie Doan, Sahar Al Seesi, Adam Kolom, Fred Ramsdell, Nicolas Robine, Andrew J. Rech

مصطلحات موضوعية: medicine.medical_treatment, T cell, Programmed Cell Death 1 Receptor, No reference, Sequencing data, Computational biology, Biology, General Biochemistry, Genetics and Molecular Biology, Epitope, Cohort Studies, Epitopes, 03 medical and health sciences, 0302 clinical medicine, Antigens, Neoplasm, Neoplasms, Research community, medicine, Humans, Alleles, 030304 developmental biology, Antigen Presentation, 0303 health sciences, Immunogenicity, Reproducibility of Results, Immunotherapy, medicine.anatomical_structure, Peptides, 030217 neurology & neurosurgery

وصف الملف: application/vnd.ms-excel

الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5b788124c42a6ace5b9cb5efa2f3572cTest
https://resolver.caltech.edu/CaltechAUTHORS:20201019-121956456Test

المؤلفون: Baikang Pei, Yi-Hsiang Hsu

المصدر: Immunogenetics. 72(5)

مصطلحات موضوعية: 0301 basic medicine, In silico, Immunology, Peptide, Computational biology, Major histocompatibility complex, Convolutional neural network, 03 medical and health sciences, 0302 clinical medicine, Deep Learning, Antigens, Neoplasm, MHC class I, Genetics, Cytotoxic T cell, Humans, Computer Simulation, Amino Acid Sequence, Databases, Protein, Alleles, chemistry.chemical_classification, biology, T-cell receptor, Histocompatibility Antigens Class I, Reproducibility of Results, Amino acid, 030104 developmental biology, chemistry, biology.protein, Neural Networks, Computer, Peptides, 030215 immunology, Protein Binding

الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::7a5ecc265cc4276204e201cdb8e5155cTest
https://pubmed.ncbi.nlm.nih.gov/32577798Test

المؤلفون: Gang Fang, LaDeana W. Hillier, Brenton R. Graveley, Ali Mortazavi, Norbert Perrimon, Nathan Boley, Jingyi Jessica Li, William C. Spencer, James B. Brown, Chau Huynh, Roger A. Hoskins, Mark Gerstein, Ann S. Hammonds, Sarah Djebali, Sonali Jha, Kenneth H. Wan, Cédric Howald, Raymond K. Auerbach, Chenghai Xue, Haiyan Huang, Jorg Drenkow, Elise A. Feingold, Julien Lagarde, Daifeng Wang, Dmitri D. Pervouchine, Thomas R. Gingeras, Guilin Wang, Peter Cherbas, Brent Ewing, Chao Di, Gary Saunders, Benjamin W. Booth, Joel Rozowsky, Yan Zhang, Anastasia Samsonova, Dionna M. Kasper, Cristina Sisu, Marcus H. Stoiber, Jiayu Wen, Michael O. Duff, Felix Schlesinger, Gennifer E. Merrihew, Sara Olson, Susan E. Celniker, Burak H. Alver, Chao Cheng, Gemma E. May, Alexandre Reymond, Carrie A. Davis, Alexander Dobin, Max E. Boeck, Roger P. Alexander, Michael J. Pazin, Peter J. Park, Adam Frankish, Lucy Cherbas, Zhi Lu, Kevin Y. Yip, Henry Zheng, Owen Thompson, Jing Leng, Kathie L. Watkins, Andrea Tanzer, Valerie Reinke, Rebecca McWhirter, Eric C. Lai, Steven E. Brenner, Robert H. Waterston, Koon-Kiu Yan, Masaomi Kato, Roderic Guigó, Huaien Wang, Kimberly Bell, Pnina Strasbourger, Baikang Pei, Jen Harrow, Long Hu, Chris Zaleski, Rabi Murad, Thomas C. Kaufman, Erik Ladewig, Robert R. Kitchen, Anurag Sethi, Kejia Wen, Guanjun Gao, Arif Harmanci, Megan Fastuca, Brian Oliver, Frank J. Slack, David M. Miller, Tim Hubbard, Garrett Robinson, Peter J. Good, Peter J. Bickel, Michael J. MacCoss, Li Yang

المصدر: Nature
Recercat. Dipósit de la Recerca de Catalunya
instname
NATURE
Nature, vol 512, iss 7515
Nature, vol. 512, no. 7515, pp. 445-448

مصطلحات موضوعية: RNA, Untranslated, Caenorhabditis elegans -- Embriologia, Genome, Transcriptome, Histones, 0302 clinical medicine, Models, Cluster Analysis, Developmental, Drosòfila -- Genètica, Promoter Regions, Genetic, Genetics, 0303 health sciences, Multidisciplinary, biology, Pupa, Untranslated, Gene Expression Regulation, Developmental, Chromatin, Molecular Sequence Annotation, Drosophila melanogaster, Larva, Sequence Analysis, Biotechnology, animal structures, General Science & Technology, Computational biology, ENCODE, Article, Promoter Regions, 03 medical and health sciences, Genetic, Regulació genètica, Animals, Humans, Transcriptomics, Caenorhabditis elegans, 030304 developmental biology, Comparative genomics, Models, Genetic, Phylum, Sequence Analysis, RNA, Gene Expression Profiling, fungi, Human Genome, biology.organism_classification, Gene expression profiling, Gene Expression Regulation, RNA, Generic health relevance, 030217 neurology & neurosurgery

وصف الملف: application/pdf

الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6ff4743e37adbb649e1f3de16b418d13Test
http://europepmc.org/articles/PMC4155737Test

المؤلفون: David W. Radke, Suganthi Balasubramanian, Charles Lee, Omer Gokcumen, Rebecca C. Iskow, Baikang Pei, Mark Gerstein, Alexej Abyzov, Lukas Habegger

المصدر: Genome Research. 23:2042-2052

مصطلحات موضوعية: Genotype, Retroelements, Pseudogene, Population, Biology, Genome, Evolution, Molecular, Gene Duplication, Genetics, Humans, 1000 Genomes Project, education, Gene, Phylogeny, Genetics (clinical), education.field_of_study, Phylogenetic tree, Genome, Human, Research, Computational Biology, Reproducibility of Results, Sequence Analysis, DNA, Evolutionary biology, Human genome, Cell Division, Pseudogenes, Reference genome

الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::826f6de94ace0ae0192e06f908d1afa1Test
https://doi.org/10.1101/gr.154625.113Test

المؤلفون: Ravi Nori, A. Wong, Yoo-Ah Kim, David W. Rowe, Baikang Pei, Saira A. Kazmi, Dong-Guk Shin, Winfried Krueger, Jeffrey Maddox

المصدر: IEEE Transactions on Information Technology in Biomedicine. 13:1075-1082

مصطلحات موضوعية: Microarray, Computer science, Gene regulatory network, Genomics, Context (language use), Single gene, Computational biology, computer.software_genre, User-Computer Interface, Microarray databases, Gene Regulatory Networks, DNA microarray experiment, Electrical and Electronic Engineering, KEGG, Gene, Oligonucleotide Array Sequence Analysis, Regulation of gene expression, Microarray analysis techniques, Computational Biology, Reproducibility of Results, General Medicine, Computer Science Applications, Gene expression profiling, Data mining, computer, Algorithms, Signal Transduction, Biotechnology

الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6dc0ae1f26125ba5f19c2750b38ddd78Test
https://doi.org/10.1109/titb.2009.2032540Test