المؤلفون: Gonçalves, Luciana Mara Fé, Araújo, José Deney Alves de, Santos, Carlos Henrique dos Anjos dos, Val, Adalberto Luis, Vera, Almeida-val

العلاقة: Volume 89, Pags. 0-0; https://repositorio.inpa.gov.br/handle/1/21165Test

الإتاحة: https://doi.org/10.1016/j.jtherbio.2019.102487Test
https://repositorio.inpa.gov.br/handle/1/21165Test

المؤلفون: Araújo, José Deney Alves de

المساهمون: Ghelfi, Andrea, http://lattes.cnpq.br/1250847135870845Test, Val, Adalberto Luis, http://lattes.cnpq.br/2747150211073176Test, Alencar, Tainá Raiol, http://lattes.cnpq.br/9295686881191724Test, Souza, Antonia Queiroz Lima de, http://lattes.cnpq.br/8499987875894209Test

مصطلحات موضوعية: Rio Negro, Rio Tapajós, Rio Solimões, Expressão diferencial, RNASeq, pH ácido, Regulação iônica, Biotecnologia

وصف الملف: application/pdf

العلاقة: ALMEIDA, R. G. DE. Biologia Alimentar de três espécies de Triportheus (Pisces: Characoideil, characidae) do lago do Castanho, Amazonas. Acta Amazonica, v. 14, n. 1-2, p. 48–76, 1984. ALTSCHUL, S.; MADDEN, T.; SCHÄFFER, A.; ZHENG, J. Gapped BLAST and PSIBLAST: a new generation of protein database search programs. Nucleic Acids Research, v. 25, n. 17, p. 3389–3402, 1997. AMARAL, B. D. DO. Fisheries and fishing effort at the Indigenous Reserves Ashaninka/Kaxinawá, river Breu, Brazil/Peru. Acta Amazonica, v. 35, n. 2, p. 133– 144, 2005. ANDREWS, S. FastQC: A quality control tool for high throughput sequence data. 2010.ASHBURNER, M. et al. Gene Ontology: tool for the unification of biology. Nature Genetics, v. 25, n. 1, p. 25–29, 2000. BAYAA, M.; VULESEVIC, B.; ESBAUGH, A.; BRAUN, M.; EKKER, M. E.; GROSELL, M.; PERRY, S. F. The involvement of SLC26 anion transporters in chloride uptake in zebrafish (Danio rerio) larvae. Journal of Experimental Biology, v. 212, n. 20, p. 3283–3295, 2009. BOLGER, A. M.; LOHSE, M.; USADEL, B. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics, v. 30, n. 15, p. 2114–2120, 2014. BONGA, S. E.; FLIK, G.; BALM, P. H. M.; VAN DER MEIJ, J. C. A. The ultrastructure of chloride cells in the gills of the teleost Oreochromis mossambicus during exposure to acidified water. Cell and Tissue Research, v. 259, n. 3, p. 575–585, 1990. BREVES, J. P.; MCCORMICK, S. D.; KARLSTROM, R. O. Prolactin and teleost ionocytes: New insights into cellular and molecular targets of prolactin in vertebrate epithelia. General and comparative endocrinology, v. 203C, p. 21–28, 2014. CAMPBELL, P. G.; TWISS, M. R.; WILKINSON, K. J. Accumulation of natural organic matter on the surfaces of living cells: implications for the interaction of toxic 30 solutes with aquatic biota. Canadian Journal of Fisheries and Aquatic Sciences, v. 54, n. 11, p. 2543–2554, 1997. CÁUPER, G. C. DE B. Biodiversidade Amazônica. Centro Cultural dos povos da Amazônia, v. 1, p. 1–162, 2006. CHANG, W. J.; HORNG, J. L.; YAN, J. J.; HSIAO, C. D.; HWANG, P. P. The transcription factor, glial cell missing 2, is involved in differentiation and functional regulation of H+-ATPase-rich cells in zebrafish (Danio rerio). AJP: Regulatory, Integrative and Comparative Physiology, v. 296, n. 4, p. R1192–R1201, 2009. CLAIBORNE, J. B.; EDWARDS, S. L.; MORRISON-SHETLAR, A. I. Acid-base regulation in fishes: cellular and molecular mechanisms. Journal of Experimental Zoology, v. 293, n. 3, p. 302–319, 2002. COOKE, G. M.; CHAO, N. L.; BEHEREGARAY, L. B. Divergent natural selection with gene flow along major environmental gradients in Amazonia: insights from genome scans, population genetics and phylogeography of the characin fish Triportheus albus. Molecular ecology, v. 21, n. 10, p. 2410–2427, 2012. DE PINNA, M. Diversity of Tropical Fishes. In: L, V. A.; F, A.-V. V. M.; RANDALL, D. J. (Eds.). The Physiology of Tropical Fishes. p. 47–84, 2006. DORIA, C. R. DA C.; QUEIROZ, L. J. DE. A pesca comercial das sardinhas (Triportheus spp.) desembarcadas no mercado pesqueiro de Porto Velho, Rondônia (1990-2004): Produção pesqueira e perfil geral. Biotemas, v. 21, n. 3, p. 99–106, 2008. DUARTE, R. M.; FERREIRA, M. S.; WOOD, C. M.; VAL, A. L. Effect of low pH exposure on Na+ regulation in two cichlid fish species of the Amazon. Comparative biochemistry and physiology. Part A, Molecular & integrative physiology, v. 166, n. 3, p. 441–8, 2013. DUARTE, R. M.; SMITH, D. S.; VAL, A. L.; WOOD, C. M. Dissolved organic carbon from the upper Rio Negro protects zebrafish (Danio rerio) against ionoregulatory disturbances caused by low pH exposure. Scientific Reports, v. 6, p. 1-10, 2016. 31 DUNCAN, W. P.; FERNANDES, M. N. Physicochemical characterization of the white, black, and clearwater rivers of the Amazon Basin and its implications on the distribution of freshwater stingrays (Chondrichthyes, Potamotrygonidae). PanAmerican Journal of Aquatic Sciences, v. 5, n. 3, p. 454–464, 2010. ERTEL, J. R.; HEDGES, J. I.; DEVOL, A. H.; RICHEY, J. E.; NAZARG, M. DE; RIBEIRO, G. Dissolved humic substances of the Amazon River system. Limnology and Oceanography, v. 31, n. 4, p. 739–754, 1986. EVANS, D. H.; PIERMARINI, P. M.; CHOE, K. P. The multifunctional fish gill: dominant site of gas exchange, osmoregulation, acid-base regulation, and excretion of nitrogenous waste. Physiological reviews, v. 85, n. 1, p. 97–177, 2005. FLIK, G.; PERRY, S. F. Cortisol stimulates whole body calcium uptake and the branchial calcium pump in freshwater rainbow trout. Journal of Endocrinology, v. 120, n. 1, p. 75–82, 1989. FREDA, J.; SANCHEZ, D. A.; BERGMAN, H. L. Shortening of Branchial Tight Junctions in Acid-Exposed Rainbow-Trout (Oncorhynchus-Mykiss). Canadian Journal of Fisheries and Aquatic Sciences, v. 48, n. 10, p. 2028–2033, 1991. GAILLARDET, J.; DUPRE, B.; ALLEGRE, C. J.; NÉGREL, P. Chemical and physical denudation in the Amazon River Basin. Chemical Geology, v. 142, n. 3-4, p. 141– 173, 1997. GENTLEMAN, R. C.; CAREY, V. J.; BATES, D. M.; BOLSTAD, B.; DETTLING, M.; DUDOIT, S.; ELLIS, B.; GAUTIER, L.; GE, Y.; GENTRY, J.; HORNIK, K.; HOTHORN, T.; HUBER, W.; IACUS, S.; IRIZARRY, R.; LEISCH, F.; LI, C.; MAECHLER, M.; ROSSINI, A. J.; SAWITZKI, G.; SMITH, C.; SMYTH, G.; TIERNEY, L.; YANG, J. H.; ZHANG, J. Bioconductor: open software development for computational biology and bioinformatics. Genome Biology, v. 5, n. 10, p. R80, 2004. GILMOUR, K. M.; PERRY, S. F. Carbonic anhydrase and acid-base regulation in fish. The Journal of experimental biology, v. 212, n. 11, p. 1647–1661, 2009. 32 GONZALEZ, R. J.; WILSON, R. W. Patterns of ion regulation in acidophilic fish native to the ion-poor, acidic Rio Negro. Journal of Fish Biology, v. 58, n. 6, p. 1680– 1690, 2001. GONZALEZ, R. J.; WILSON, R. W.; WOOD, C. M.; PATRICK, M. L.; VAL, A. L. Diverse Strategies for Ion Regulation in Fish Collected from the Ion‐Poor, Acidic Rio Negro. Physiological and Biochemical Zoology, v. 75, n. 1, p. 37–47, 2002. GONZALEZ-MARISCAL, L.; CONTRERAS, R. G.; BOLIVAR, J. J.; PONCE, A.; CHAVEZ DE RAMIREZ, B.; CEREIJIDO, M. Role of calcium in tight junction formation between epithelial cells. American Journal of Physiology, v. 259, p. C987–C994, 1990. GRABHERR, M. G.; HAAS, B. J.; YASSOUR, M.; LEVIN, J. Z.; THOMPSON, D. A.; AMIT, I.; ADICONIS, X.; FAN, L.; RAYCHOWDHURY, R.; ZENG, Q.; CHEN, Z.; MAUCELI, E.; HACOHEN, N.; GNIRKE, A.; RHIND, N.; DI PALMA, F.; BIRREN, B. W.; NUSBAUM, C.; LINDBLAD-TOH, K.; FRIEDMAN, N.; REGEV, A. Full-length transcriptome assembly from RNA-Seq data without a reference genome. Nature Biotechnology, v. 29, n. 7, p. 644–652, 2011. HARTER, T. S.; SHARTAU, R. B.; BAKER, D. W.; JACKSON, D. C.; VAL, A L.; BRAUNER, C. J. Preferential intracellular pH regulation represents a general pattern of pH homeostasis during acid–base disturbances in the armoured catfish, Pterygoplichthys pardalis. Journal of Comparative Physiology B, v. 184, n. 6, p. 709–718, 2014. HOLLAND, A.; DUIVENVOORDEN, L. J.; KINNEAR, S. H. W. Naturally acidic waterways: conceptual food webs for better management and understanding of ecological functioning. Aquatic Conservation: Marine and Freshwater Ecosystems, v. 22, n. 6, p. 836–847, 2012. ITO, Y.; KOBAYASHI, S.; NAKAMURA, N.; MIYAGI, H.; ESAKI, M.; HOSHIJIMA, K.; HIROSE, S. Close Association of Carbonic Anhydrase (CA2a and CA15a), Na+/H+ Exchanger (Nhe3b), and Ammonia Transporter Rhcg1 in Zebrafish Ionocytes Responsible for Na+ Uptake. Frontiers in Physiology, v. 4, p. 1–17, 2013. 33 JESUS, T. F.; GROSSO, A. R.; ALMEIDA-VAL, V. M. F.; COELHO, M. M. Transcriptome profiling of two Iberian freshwater fish exposed to thermal stress. Journal of Thermal Biology, v. 55, p. 54–61, 2016. Junk, W.J.; Bayley, P. B.; Sparks, R. E. The flood pulse concept in River-Floodplain Systems, in: D.P. Dodge (Ed.), Proceedings of the International Large River Symposium. Can. Spec. Publ. Fish. Aquat. Sci., Canada, 110-127, 1989. KELLY, S. P.; WOOD, C. M. Effect of cortisol on the physiology of cultured pavement cell epithelia from freshwater trout gills. American Journal of Physiology - Regulatory, integrativa e fisiologia comparativa, v. 281, n. 3, p. R811–R820, 2001. KODRA, A. DE S.; FERNANDES, M. N.; DUNCAN, W. L. P. Effect of clearwater on osmoregulation of cururu ray, Potamotrygon spp. (Chondrichthyes; Potamotrygonidae), an endemic specie from blackwater river. Scientia Amazonia, v. 3, n. 1, p. 15–24, 2014. KONHAUSER, K. O.; FYFE, W. S.; KRONBERG, B. I. Multi-element chemistry of some Amazonian waters and soils. Chemical Geology, v. 111, n. 1-4, p. 155–175, 1994. KÜCHLER, I. L.; MIEKELEY, N.; FORSBERG, B. R. A contribution to the chemical characterization of rivers in the Rio Negro Basin, Brazil. Journal of the Brazilian Chemical Society, v. 11, n. 3, p. 286–292, 2000. KUMAI, Y.; NESAN, D.; VIJAYAN, M. M.; PERRY, S. F. Cortisol regulates Na+ uptake in zebrafish, Danio rerio, larvae via the glucocorticoid receptor. Molecular and cellular endocrinology, v. 364, n. 1-2, p. 113–25, 2012. KUMAI, Y.; PERRY, S. F. Ammonia excretion via Rhcg1 facilitates Na+ uptake in larval zebrafish, Danio rerio, in acidic water. AJP: Regulatory, Integrative and Comparative Physiology, v. 301, n. 5, p. R1517–R1528, 2011. KWONG, R. W. M.; KUMAI, Y.; PERRY, S. F. The physiology of fish at low pH: the zebrafish as a model system. The Journal of experimental biology, v. 217, n. 5, p. 34 651–662, 2014. KWONG, R. W. M.; PERRY, S. F. Cortisol regulates epithelial permeability and sodium losses in zebrafish exposed to acidic water. The Journal of endocrinology, v. 217, n. 3, p. 253–264, 2013. LANGMEAD, B.; SALZBERG, S. L. Fast gapped-read alignment with Bowtie 2. Nature Methods, v. 9, p. 357–359, 2012. LEMGRUBER, R. D. S. P.; MARSHALL, N. A. D. A.; GHELFI, A.; FAGUNDES, D. B.; VAL, A. L. Functional categorization of transcriptome in the species Symphysodon aequifasciatus Pellegrin 1904 (Perciformes: Cichlidae) exposed to benzo[a]pyrene and phenanthrene. Plos One, v. 8, n. 12, p. 1-13, 2013. LI, B.; DEWEY, C. N. RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome. BMC Bioinformatics, v. 12, n. 1, p. 323, 2011. LI, S.; LIU, C.; HUANG, J.; LIU, Y.; ZHANG, S.; ZHENG, G.; XIE, L.; ZHANG, R. Transcriptome and biomineralization responses of the pearl oyster Pinctada fucata to elevated CO2 and temperature. Scientific Reports, v. 6, p. 18943, 2016. LIN, H.; RANDALL, D. J. H+-ATPase Activity in crude homogenates of fish gill tissue: Inhibitor sensitivity and environmental and hormonal regulation. The Journal of Experimental Biology, v. 174, n. 180, p. 163–174, 1993. LIN, L. Y.; HORNG, J. L.; KUNKEL, J. G.; HWANG, P. P. Proton pump-rich cell secretes acid in skin of zebrafish larvae. AJP: Cell Physiology, v. 290, n. 2, p. C371–C378, 2006. LIN, T. Y.; LIAO, B. K.; HORNG, J. L.; YAN, J. J.; HSIAO, C. D.; HWANG, P. P. Carbonic anhydrase 2-like a and 15a are involved in acid-base regulation and Na+ uptake in zebrafish H+-ATPase-rich cells. AJP: Cell Physiology, v. 294, n. 5, p. C1250–C1260, 2008. LOGAN, C. A.; BUCKLEY, B. A. Transcriptomic responses to environmental temperature in eurythermal and stenothermal fishes. Journal of Experimental Biology, v. 218, n. 12, p. 1915–1924, 2015. 35 MALABARBA, M. C. S. L. Revision of the Neotropical genus Triportheus Cope, 1872 (Characiformes: Characidae). Neotropical Ichthyology, v. 2, n. 4, p. 167–204, 2004. MARSHALL, W. S. Na+, Cl-, Ca2+ and Zn2+ transport by fish gills: retrospective review and prospective synthesis. Journal of Experimental Zoology, v. 293, n. 3, p. 264– 283, 2002. MATEY, V.; IFTIKAR, F. I.; DE BOECK, G.; SCOTT, G. R.; SLOMAN, K. A.; ALMEIDA-VAL, V. M. F.; VAL, A. L.; WOOD, C. M. Gill morphology and acute hypoxia: responses of mitochondria-rich, pavement, and mucous cells in the Amazonian oscar (Astronotus ocellatus) and the rainbow trout (Oncorhynchus mykiss), two species with very different approaches to the osmo-respiratory com. Canadian Journal of Zoology, v. 89, p. 307–324, 2011. MATSUO, A. Y. O.; VAL, A. L. Acclimation to humic substances prevents whole body sodium loss and stimulates branchial calcium uptake capacity in cardinal tetras Paracheirodon axelrodi (Schultz) subjected to extremely low pH. Journal of Fish Biology, v. 70, n. 4, p. 989–1000, 2007. MATSUO, A. Y.; VAL, A. L. Low pH and calcium effects on net Na+ and K+ fluxes in two catfish species from the Amazon River (Corydoras: Callichthyidae). Brazilian Jornaul of Medical and Biological Research, v. 35, p. 361–367, 2002. MCDONALD, D. G. The effects of H+ upon the gills of freshwater fish. Canadian Journal of Zoology, v. 61, n. 4, p. 691–703, 1983. MIRANDA, R.; PEREIRA, S.; ALVES, D.; OLIVEIRA, G. Qualidade dos recursos hídricos da Amazônia - Rio Tapajós: avaliação de caso em relação aos elementos químicos e parâmetros físico-químicos. Ambiente e Água, v. 4, n. 2, p. 75–92, 2009. MOLINIER, M.; GUYOT, J. L.; GUIMAMES, V.; OLIVEIRA, E. Hydrologie du bassin de l’Amazone. Grands Bassins Fluviaux Péri-atlantiques, v. 1, p. 335–344, 1995. PARKS, S. K.; TRESGUERRES, M.; GOSS, G. G. Theoretical considerations underlying Na+ uptake mechanisms in freshwater fishes. Comparative Biochemistry and Physiology Part C: Toxicology & Pharmacology, v. 148, n. 4, 36 p. 411–418, 2008. PASCOALOTO, D.; BRINGEL, S. R. B. Macroalgas e qualidade da água na bacia do alto Rio Negro - Município de São Gabriel da Cachoeira (AM). Caminhos da Geografia, v. 11, n. 36, p. 318–330, 2010. PERRY, S. F.; VULESEVIC, B.; GROSELL, M.; BAYAA, M. Evidence that SLC26 anion transporters mediate branchial chloride uptake in adult zebrafish (Danio rerio). AJP: Regulatory, Integrative and Comparative Physiology, v. 297, n. 4, p. R988– R997, 2009. PINHEIRO, L. A.; BORGES, J. T. Avaliação hidroquímica qualitativa das águas do baixo rio negro. Revista Eletrônica de Petróleo e Gás, v. 1, n. 2, p. 23–32, 2013. PRADO-LIMA, M.; VAL, A. L. Transcriptomic Characterization of Tambaqui (Colossoma macropomum, Cuvier, 1818) Exposed to Three Climate Change Scenarios. Plos One, v. 11, n. 3, p. 1-21, 2016. QUEIROZ, M. M. A.; HORBE, A. M. C.; SEYLER, P.; AUGUSTO, C.; MOURA, V. Hidroquímica do rio Solimões na região entre Manacapuru e Alvarães – Amazonas – Brasil. Acta Amazonica, v. 39, n. 4, p. 943–952, 2009. ROBINSON, M. D.; MCCARTHY, D. J.; SMYTH, G. K. EdgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics, v. 26, n. 1, p. 139–140, 2010. SILVA, M. S.; CUNHA, H. B.; MIRANDA, S.; SANTANA, G. P.; PASCOALOTO, D. Química das águas de superfície dos rios da bacia amazônica: uma contribuição para classificação de acordo com seus usos. XIX Simpósio Brasileiro de Recursos Hídricos, 2010. SILVA, M. S.; NAVES, S. Á. F. R. S.; PEREIRA, S. L. R. DA S. G. Classification of Amazonian rivers: A strategy for the preservation of these resources. Holos Environment, v. 13, n. 2, p. 163–174, 2013. SIOLI, H. The Amazon. Dordrecht: Springer Netherlands, v. 56, 1984. 37 VAL, A. L.; ALMEIDA-VAL, V. M. F. Fishes of the Amazon and Their Environment. Berlin, Heidelberg: Springer Berlin Heidelberg, v. 32, 1995. VAL, A. L.; SILVA, M. N. P.; ALMEIDA-VAL, V. M. . Hypoxia adaptation in fish of the Amazon: a never-ending task. South African Journal of Zoology, v. 33, n. 2, p. 107–114, 1998. VIDAL-DUPIOL, J.; ZOCCOLA, D.; TAMBUTTÉ, E.; GRUNAU, C.; COSSEAU, C.; SMITH, K. M.; FREITAG, M.; DHEILLY, N. M.; ALLEMAND, D.; TAMBUTTÉ, S. Genes Related to Ion-Transport and Energy Production Are Upregulated in Response to CO2-Driven pH Decrease in Corals: New Insights from Transcriptome Analysis. Plos One, v. 8, n. 3, p. 1-11, 2013. WALKER, I. Amazonian streams and small rivers. In: TUNDISI, J. G.; MATSUMURA TUNDISI, T.; BICUDO, C. E. (Eds.). Limnology in Brazil. Academia B ed. Rio de Janeiro: [s.n.]. p. 167–193, 1995. WENDELAAR BONGA, S. E.; VAN DER MEIJ, J. C. A.; FLIK, G. Prolactin and acid stress in the teleost Oreochromis (formerly Sarotherodon) mossambicus. General and Comparative Endocrinology, v. 55, n. 2, p. 323–332, 1984. WOOD, C. M.; AL-REASI, H. A.; SMITH, D. S. The two faces of DOC. Aquatic Toxicology, v. 105, n. 3-4, p. 3–8, 2011. WOOD, C. M.; KAJIMURA, M.; SLOMAN, K. A; SCOTT, G. R.; WALSH, P. J.; ALMEIDA-VAL, V. M. F.; VAL, A. L. Rapid regulation of Na+ fluxes and ammonia excretion in response to acute environmental hypoxia in the Amazonian oscar, Astronotus ocellatus. American journal of physiology. Regulatory, integrative and comparative physiology, v. 292, p. R2048–R2058, 2007. WOOD, C. M.; ROBERTSON, L. M.; JOHANNSSON, O. E.; VAL, A. L. Mechanisms of Na+ uptake, ammonia excretion, and their potential linkage in native Rio Negro tetras (Paracheirodon axelrodi, Hemigrammus rhodostomus, and Moenkhausia diktyota). Journal of comparative physiology. B, Biochemical, systemic, and environmental physiology, v. 184, n. 7, p. 877–90, 2014. 38 WOOD, C. M.; WILSON, R. W.; GONZALEZ, R. J.; PATRICK, M. L.; BERGMAN, H. L.; NARAHARA, A.; VAL, A. L. Responses of an Amazonian teleost, the tambaqui (Colossoma macropomum), to low pH in extremely soft water. Physiological zoology, v. 71, n. 6, p. 658–670, 1998. WRIGHT, P. A.; WOOD, C. M. Seven things fish know about ammonia and we don’t. Respiratory Physiology & Neurobiology, v. 184, n. 3, p. 231–240, 2012.; http://repositorioinstitucional.uea.edu.br//handle/riuea/2322Test

الإتاحة: http://repositorioinstitucional.uea.edu.br//handle/riuea/2322Test

المؤلفون: Araújo, José Deney Alves de

المساهمون: Nakaya, Helder Takashi Imoto

مصطلحات موضوعية: Record linkage, BLAST, Codificação em DNA, Epidemiologia, Ferramentas genômicas, Genomic tools, Epidemiological, DNA-encoded

وصف الملف: application/pdf

العلاقة: http://www.teses.usp.br/teses/disponiveis/95/95131/tde-23072021-132101Test/

الإتاحة: https://doi.org/10.11606/T.95.2021.tde-23072021-132101Test
http://www.teses.usp.br/teses/disponiveis/95/95131/tde-23072021-132101Test/