نتائج البحث - "Sonenshine D.E."

1

دورية أكاديمية

Genomic insights into the Ixodes scapularis tick vector of Lyme disease.

المؤلفون: Gulia-Nuss, M., Nuss, A.B., Meyer, J.M., Sonenshine, D.E., Roe, R.M., Waterhouse, R.M., Sattelle, D.B., de la Fuente, J., Ribeiro, J.M., Megy, K., Thimmapuram, J., Miller, J.R., Walenz, B.P., Koren, S., Hostetler, J.B., Thiagarajan, M., Joardar, V.S., Hannick, L.I., Bidwell, S., Hammond, M.P., Young, S., Zeng, Q., Abrudan, J.L., Almeida, F.C., Ayllón, N., Bhide, K., Bissinger, B.W., Bonzon-Kulichenko, E., Buckingham, S.D., Caffrey, D.R., Caimano, M.J., Croset, V., Driscoll, T., Gilbert, D., Gillespie, J.J., Giraldo-Calderón, G.I., Grabowski, J.M., Jiang, D., Khalil, S.M., Kim, D., Kocan, K.M., Koči, J., Kuhn, R.J., Kurtti, T.J., Lees, K., Lang, E.G., Kennedy, R.C., Kwon, H., Perera, R., Qi, Y., Radolf, J.D., Sakamoto, J.M., Sánchez-Gracia, A., Severo, M.S., Silverman, N., Šimo, L., Tojo, M., Tornador, C., Van Zee, J.P., Vázquez, J., Vieira, F.G., Villar, M., Wespiser, A.R., Yang, Y., Zhu, J., Arensburger, P., Pietrantonio, P.V., Barker, S.C., Shao, R., Zdobnov, E.M., Hauser, F., Grimmelikhuijzen, C.J., Park, Y., Rozas, J., Benton, R., Pedra, J.H., Nelson, D.R., Unger, M.F., Tubio, J.M., Tu, Z., Robertson, H.M., Shumway, M., Sutton, G., Wortman, J.R., Lawson, D., Wikel, S.K., Nene, V.M., Fraser, C.M., Collins, F.H., Birren, B., Nelson, K.E., Caler, E., Hill, C.A.

المصدر: Nature Communications, vol. 7, no. 10507, pp. 10507

مصطلحات موضوعية: Anaplasma phagocytophilum, Animals, Arachnid Vectors/genetics, Gene Expression Profiling, Genome/genetics, Genomics, Ixodes/genetics, Ligand-Gated Ion Channels/genetics, Lyme Disease/transmission, Oocytes, Xenopus laevis

الوصف: Ticks transmit more pathogens to humans and animals than any other arthropod. We describe the 2.1 Gbp nuclear genome of the tick, Ixodes scapularis (Say), which vectors pathogens that cause Lyme disease, human granulocytic anaplasmosis, babesiosis and other diseases. The large genome reflects accumulation of repetitive DNA, new lineages of retro-transposons, and gene architecture patterns resembling ancient metazoans rather than pancrustaceans. Annotation of scaffolds representing ∼57% of the genome, reveals 20,486 protein-coding genes and expansions of gene families associated with tick-host interactions. We report insights from genome analyses into parasitic processes unique to ticks, including host 'questing', prolonged feeding, cuticle synthesis, blood meal concentration, novel methods of haemoglobin digestion, haem detoxification, vitellogenesis and prolonged off-host survival. We identify proteins associated with the agent of human granulocytic anaplasmosis, an emerging disease, and the encephalitis-causing Langat virus, and a population structure correlated to life-history traits and transmission of the Lyme disease agent.

وصف الملف: application/pdf

العلاقة: info:eu-repo/semantics/altIdentifier/pmid/26856261; info:eu-repo/semantics/altIdentifier/eissn/2041-1723; info:eu-repo/semantics/altIdentifier/urn/urn:nbn:ch:serval-BIB_D4988D4D91517; https://serval.unil.ch/notice/serval:BIB_D4988D4D9151Test; urn:issn:2041-1723; https://serval.unil.ch/resource/serval:BIB_D4988D4D9151.P001/REF.pdfTest; http://nbn-resolving.org/urn/resolver.pl?urn=urn:nbn:ch:serval-BIB_D4988D4D91517Test

الإتاحة: https://doi.org/10.1038/ncomms10507Test
https://serval.unil.ch/notice/serval:BIB_D4988D4D9151Test
https://serval.unil.ch/resource/serval:BIB_D4988D4D9151.P001/REF.pdfTest
http://nbn-resolving.org/urn/resolver.pl?urn=urn:nbn:ch:serval-BIB_D4988D4D91517Test

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النص الكامل

2

دورية أكاديمية

Responses of the ticks Amblyomma hebraeum and A. variegatum to known or potential components of the aggregation-attachment pheromome. III. Aggregation

المؤلفون: Norval, R.A.I., Peter, T.F., Sonenshine, D.E., Burridge, M.J.

المصدر: Experimental and Applied Acarology

مصطلحات موضوعية: animal diseases, metastigmata, amblyomma hebraeum, amblyomma variegatum, disease transmission

وصف الملف: p. 237-245

العلاقة: Experimental & Applied Acarology;16: 237-245; https://hdl.handle.net/10568/28561Test; https://doi.org/10.1007/BF01193806Test

الإتاحة: https://doi.org/10.1007/BF01193806Test
https://hdl.handle.net/10568/28561Test

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3

دورية أكاديمية

Large expert-curated database for benchmarking document similarity detection in biomedical literature search

المؤلفون: Brown P., Zhou Y., Tan A.-C., El-Esawi M.A., Liehr T., Blanck O., Gladue D.P., Almeida G.M.F., Cernava T., Sorzano C.O., Yeung A.W.K., Engel M.S., Chandrasekaran A.R., Muth T., Staege M.S., Daulatabad S.V., Widera D., Zhang J., Meule A., Honjo K., Pourret O., Yin C.-C., Zhang Z., Cascella M., Flegel W.A., Goodyear C.S., van Raaij M.J., Bukowy-Bieryllo Z., Campana L.G., Kurniawan N.A., Lalaouna D., Hüttner F.J., Ammerman B.A., Ehret F., Cobine P.A., Tan E.-C., Han H., Xia W., McCrum C., Dings R.P.M., Marinello F., Nilsson H., Nixon B., Voskarides K., Yang L., Costa V.D., Bengtsson-Palme J., Bradshaw W., Grimm D.G., Kumar N., Martis E., Prieto D., Sabnis S.C., Amer S.E.D.R., Liew A.W.C., Perco P., Rahimi F., Riva G., Zhang C., Devkota H.P., Ogami K., Basharat Z., Fierz W., Siebers R., Tan K.H., Boehme K.A., Brenneisen P., Brown J.A.L., Dalrymple B.P., Harvey D.J., Ng G., Werten S., Bleackley M., Dai Z., Dhariwal R., Gelfer Y., Hartmann M.D., Miotla P., Tamaian R., Govender P., Gurney-Champion O.J., Kauppila J.H., Zhang X., Echeverría N., Subhash S., Sallmon H., Tofani M., Bae T., Bosch O., Cuív P.O., Danchin A., Diouf B., Eerola T., Evangelou E., Filipp F., Klump H., Kurgan L., Smith S.S., Terrier O., Tuttle N., Ascher D.B., Janga S.C., Schulte L.N., Becker D., Browngardt C., Bush S.J., Gaullier G., Ide K., Meseko C., Werner G.D.A., Zaucha J., Al-Farha A.A., Greenwald N.F., Popoola S.I., Rahman S., Xu J., Yang S.Y., Hiroi N., Alper O.M., Baker C.I., Bitzer M., Chacko G., Debrabant B., Dixon R., Forano E., Gilliham M., Kelly S., Klempnauer K.-H., Lidbury B.A., Lin M.Z., Lynch I., Ma W., Maibach E.W., Mather D.E., Nandakumar K.S., Ohgami R.S., Parchi P., Tressoldi P., Xue Y., Armitage C., Barraud P., Chatzitheochari S., Coelho L.P., Diao J., Doxey A.C., Gobet A., Hu P., Kaiser S., Mitchell K.M., Salama M.F., Shabalin I.G., Song H., Stevanovic D., Yadollahpour A., Zeng E., Zinke K., Alimba C.G., Beyene T.J., Cao Z., Chan S.S., Gatchell M., Kleppe A., Piotrowski M., Torga G., Woldesemayat A.A., Cosacak M.I., Haston S., Ross S.A., Williams R., Wong A., Abramowitz M.K., Effiong A., Lee S., Abid M.B., Agarabi C., Alaux C., Albrecht D.R., Atkins G.J., Beck C.R., Bonvin A.M.J.J., Bourke E., Brand T., Braun R.J., Bull J.A., Cardoso P., Carter D., Delahay R.M., Ducommun B., Duijf P.H.G., Epp T., Eskelinen E.-L., Fallah M., Farber D.B., Fernandez-Triana J., Feyerabend F., Florio T., Friebe M., Furuta S., Gabrielsen M., Gruber J., Grybos M., Han Q., Heinrich M., Helanterä H., Huber M., Jeltsch A., Jiang F., Josse C., Jurman G., Kamiya H., de Keersmaecker K., Kristiansson E., de Leeuw F.-E., Li J., Liang S., Lopez-Escamez J.A., Lopez-Ruiz F.J., Marchbank K.J., Marschalek R., Martín C.S., Miele A.E., Montagutelli X., Morcillo E., Nicoletti R., Niehof M., O'Toole R., Ohtomo T., Oster H., Palma J.-A., Paterson R., Peifer M., Portilla M., Portillo M.C., Pritchard A.L., Pusch S., Raghava G.P.S., Roberts N.J., Ross K., Schuele B., Sergeant K., Shen J., Stella A., Sukocheva O., Uversky V.N., Vanneste S., Villet M.H., Viveiros M., Vorholt J.A., Weinstock C., Yamato M., Zabetakis I., Zhao X., Ziegler A., Aizat W.M., Atlas L., Bridges K.M., Chakraborty S., Deschodt M., Domingues H.S., Esfahlani S.S., Falk S., Guisado J.L., Kane N.C., Kueberuwa G., Lau C.L., Liang D., Liu E., Luu A.M., Ma C., Ma L., Moyer R., Norris A.D., Panthee S., Parsons J.R., Peng Y., Pinto I.M., Reschke C.R., Sillanpää E., Stewart C.J., Uhle F., Yang H., Zhou K., Zhu S., Ashry M., Bergsland N., Berthold M., Chen C.-E., Colella V., Cuypers M., Eskew E.A., Fan X., Gajda M., Gonzálezlez-Prendes R., Goodin A., Graham E.B., Groen E.J.N., Gutiérrez-Sacristán A., Habes M., Heffler E., Higginbottom D.B., Janzen T., Jayaraman J., Jibb L.A., Jongen S., Kinyanjui T., Koleva-Kolarova R.G., Li Z., Liu Y.-P., Lund B.A., Lussier A.A., Mier P., Moore M.D., Nagler K., Orme M.W., Pearson J.A., Prajapati A.S., Saito Y., Tröder S.E., Uchendu F., Verloh N., Voutchkova D.D., Abu-Zaid A., Bakkach J., Baumert P., Dono M., Hanson J., Herbelet S., Hobbs E., Kulkarni A., Liu S., Loft N.D., Reddan T., Senghore T., Vindin H., Xu H., Bannon R., Chen B., Cheung J.T.K., Cooper J., Esnakula A.K., Feghali K.A., Ghelardi E., Gnasso A., Horbar J., Lai H.M., Ma R., Pan Z., Peres M.A., Pranata R., Seow E., Sydes M., Testoni I., Westermair A.L., Yang Y., Afnan M., Albiol J., Albuquerque L.G., Amir S., Amiya E., Amorim R.M., An Q., Andersen S.U., Aplin J.D., Argyropoulos C., Asmann Y.W., Assaeed A.M., Atanasov A.G., Atchison D.A., Avery S.V., Avillach P., Baade P.D., Backman L., Badie C., Baldi A., Ball E., Bardot O., Barnett A.G., Basner M., Batra J., Bazanova O.M., Beale A., Beddoe T., Bell M.L., Berezikov E., Berners-Price S., Bernhardt P., Berry E., Bessa T.B., Billington C., Birch J., Blakely R.D., Blaskovich M.A.T., Blum R., Boelaert M., Bogdanos D., Bosch C., Bourgoin T., Bouvard D., Boykin L.M., Bradley G., Braun D., Brownlie J., Brühl A., Burt A., Butler L.M., Byrareddy S.N., Byrne H.J., Cabantous S., Calatayud S., Candal E., Carlson K., Casillas S., Castelvetro V., Caswell P.T., Cavalli G., Cerovsky V., Chagoyen M., Chen C.-S., Chen D.F., Chen H., Chen J.-T., Chen Y., Cheng C., Cheng J., Chinapaw M., Chinopoulos C., Cho W.C.S., Chong L., Chowdhury D., Chwalibog A., Ciresi A., Cockcroft S., Conesa A., Cook P.A., Cooper D.N., Coqueret O., Corea E.M., Costa A., Costa E., Coupland C., Crawford S.Y., Cruz A.D., Cui H., Cui Q., Culver D.C., D'Angiulli A., Dahms T.E.S., Daigle F., Dalgleish R., Danielsen H.E., Darras S., Davidson S.M., Day D.A., Degirmenci V., Demaison L., Devriendt K., Ding J., Dogan Y., Dong X.C., Donner C.F., Dressick W., Drevon C.A., Duan H., Ducho C., Dumaz N., Dwarakanath B.S., Ebell M.H., Eisenhardt S., Elkum N., Engel N., Erickson T.B., Fairhead M., Faville M.J., Fejzo M.S., Festa F., Feteira A., Flood-Page P., Forsayeth J., Fox S.A., Franks S.J., Frentiu F.D., Frilander M.J., Fu X., Fujita S., Galea I., Galluzzi L., Gani F., Ganpule A.P., García-Alix A., Gedye K., Giordano M., Giunta C., Gleeson P.A., Goarant C., Gong H., Gora D., Gough M.J., Goyal R., Graham K.E., Grande-Pérez A., Graves P.M., Greidanus H., Grice D., Grunau C., Gumulya Y., Guo Y., Gurevich V.V., Gusev O., Hacker E., Hage S.R., Hagen G., Hahn S., Haller D.M., Hammerschmidt S., Han J., Han R., Handfield M., Hapuarachchi H.C., Harder T., Hardingham J.E., Heck M., Heers M., Hew K.F., Higuchi Y., Hilaire C.St., Hilton R., Hodzic E., Hone A., Hongoh Y., Hu G., Huber H.P., Hueso L.E., Huirne J., Hurt L., Idborg H., Ikeo K., Ingley E., Jakeman P.M., Jensen A., Jia H., Jia S., Jiang J., Jiang X., Jin Y., Jo D., Johnson A.M., Johnston M., Jonscher K.R., Jorens P.G., Jorgensen J.O.L., Joubert J.W., Jung S.-H., Junior A.M., Kahan T., Kamboj S.K., Kang Y.-K., Karamanos Y., Karp N.A., Kelly R., Kenna R., Kennedy J., Kersten B., Khalaf R.A., Khalid J.M., Khatlani T., Khider T., Kijanka G.S., King S.R.B., Kluz T., Knox P., Kobayashi T., Koch K.-W., Kohonen-Corish M.R.J., Kong X., Konkle-Parker D., Korpela K.M., Kostrikis L.G., Kraiczy P., Kratz H., Krause G., Krebsbach P.H., Kristensen S.R., Kumari P., Kunimatsu A., Kurdak H., Kwon Y.D., Lachat C., Lagisz M., Laky B., Lammerding J., Lange M., Larrosa M., Laslett A.L., Laverman G.D., Leclair E.E., Lee K.-W., Lee M.-Y., Lee M.-S., Li G., Lieb K., Lim Y.Y., Lindsey M.L., Line P.-D., Liu D., Liu F., Liu H., Lloyd V.K., Lo T.-W., Locci E., Loidl J., Lorenzen J., Lorkowski S., Lovell N.H., Lu H., Lu W., Lu Z., Luengo G.S., Lundh L.-G., Lysy P.A., Mabb A., Mack H.G., Mackey D.A., Mahdavi S.R., Maher P., Maher T., Maity S.N., Malgrange B., Mamoulakis C., Mangoni A.A., Manke T., Manstead A.S.R., Mantalaris A., Marsal J., Marschall H.-U., Martin F.L., Martinez-Raga J., Martinez-Salas E., Mathieu D., Matsui Y., Maza E., McCutcheon J.E., McKay G.J., McMillan B., McMillan N., Meads C., Medina L., Merrick B.A., Metzger D.W., Meunier F.A., Michaelis M., Micheau O., Mihara H., Mintz E.M., Mizukami T., Moalic Y., Mohapatra D.P., Monteiro A., Montes M., Moran J.V., Morozov S.Y., Mort M., Murai N., Murphy D.J., Murphy S.K., Murray S.A., Naganawa S., Nammi S., Nasios G., Natoli R.M., Nguyen F., Nicol C., van Nieuwerburgh F., Nilsen E.B., Nobile C.J., O'Mahony M., Ohlsson S., Olatunbosun O., Olofsson P., Ortiz A., Ostrikov K., Otto S., Outeiro T.F., Ouyang S., Paganoni S., Page A., Palm C., Paradies Y., Parsons M.H., Parsons N., Pascal P., Paul E., Peckham M., Pedemonte N., Pellizzon M.A., Petrelli M., Pichugin A., Pinto C.J.C., Plevris J.N., Pollesello P., Polz M., Ponti G., Porcelli P., Prince M., Quinn G.P., Quinn T.J., Ramula S., Rappsilber J., Rehfeldt F., Reiling J.H., Remacle C., Rezaei M., Riddick E.W., Ritter U., Roach N.W., Roberts D.D., Robles G., Rodrigues T., Rodriguez C., Roislien J., Roobol M.J., Rowe A., Ruepp A., van Ruitenbeek J., Rust P., Saad S., Sack G.H., Santos M., Saudemont A., Sava G., Schrading S., Schramm A., Schreiber M., Schuler S., Schymkowitz J., Sczyrba A., Seib K.L., Shi H.-P., Shimada T., Shin J.-S., Shortt C., Silveyra P., Skinner D., Small I., Smeets P.A.M., So P.-W., Solano F., Sonenshine D.E., Song J., Southall T., Speakman J.R., Srinivasan M.V., Stabile L.P., Stasiak A., Steadman K.J., Stein N., Stephens A.W., Stewart D.I., Stine K., Storlazzi C., Stoynova N.V., Strzalka W., Suarez O.M., Sultana T., Sumant A.V., Summers M.J., Sun G., Tacon P., Tanaka K., Tang H., Tanino Y., Targett-Adams P., Tayebi M., Tayyem R., Tebbe C.C., Telfer E.E., Tempel W., Teodorczyk-Injeyan J.A., Thijs G., Thorne S., Thrift A.G., Tiffon C., Tinnefeld P., Tjahjono D.H., Tolle F., Toth E., Del Tredici A.L., Tsapas A., Tsirigotis K., Turak A., Tzotzos G., Udo E.E., Utsumi T., Vaidyanathan S., Vaillant M., Valsesia A., Vandenbroucke R.E., Veiga F.H., Vendrell M., Vesk P.A., Vickers P., Victor V.M., Villemur R., Vohl M.-C., Voolstra C.R., Vuillemin A., Wakelin S., Waldron L., Walsh L.J., Wang A.Y., Wang F., Wang Y., Watanabe Y., Weigert A., Wen J.-C., Wham C., White E.P., Wiener J., Wilharm G., Wilkinson S., Willmann R., Wilson C., Wirth B., Wojan T.R., Wolff M., Wong B.M., Wu T.-W., Wuerbel H., Xiao X., Xu D., Xu J.W., Xue B., Yalcin S., Yan H., Yang E.-C., Yang S., Yang W., Ye Y., Ye Z.-Q., Yli-Kauhaluoma J., Yoneyama H., Yu Y., Yuan G.-C., Yuh C.-H., Zaccolo M., Zeng C., Zevnik B., Zhang L., Zhang Y., Zhang Z.-Y., Zhao Y., Zhou M., Zuberbier T., Aanei C.M., Ahmad R., Al-Lawama M., Alanio A., Allardyce J., Alonso-Caneiro D., Atack J.M., Baier D., Bansal A., Benezeth Y., Berbesque C., Berrevoet F., Biedermann P.H.W., Bijleveld E., Bittner F., Blombach F., van den Bos W., Boudreau S.A., Bramoweth A.D., Braubach O., Cai Y., Campbell M., Catry T., Chen X., Cheng S., Chung H.-J., Chávez-Fumagalli M.A., Conway A., Costa B.M., Cyr N., Dean L.T., Denzel M.S., Dlamini S.V., Dudley K.J., Dufies M., Ecke T., Eckweiler D., Eixarch E., El-Adawy H., Emmrich J.V., Eustace A.J., Falter-Wagner C.M., Farhoudi R., Fuss J., Gao J., Gill M.R., Gloyn L., Goggs R., Govinden U., Greene G., Greiff V., Grundle D.S., Grüneberg P., Gumede N., Haore G., Harrison P., Hoenner X., Hojsgaard D., Hori H., Ikonomopoulou M.P., Jeurissen P., Johnson D.M., Kabra D., Kamagata K., Karmakar C., Kasian O., Kaye L.K., Khan M.M., Kim Y.-M., Kish J.K., Kobold S., Kohanbash G., Kohls G., Kugler J.-M., Kumar G., Lacy-Colson J., Latif A., Lauschke V.M., Li B., Lim C.J., Liu X., Lu J.-J., Lu Q., Mahavadi P., Marzocchi U., McGarrigle C.A., van Meerten T., Min R., Moal I., Molari M., Molleman L., Mondal S.R., van de Mortel T., Moss W.N., Moultos O.A., Mukherjee M., Nakayama K., Narayan E., Navaratnarajah, Neumann P.-A., Nie J., Nie Y., Niemeyer F., Nolan F., Nwaiwu O., Oldenmenger W.H., Olumayede E., Ou J., Pallebage-Gamarallage M., Pearce S.P., Pelkonen T., Pelleri M.C., Pereira J.L., Pheko M., Pinto K.A., Piovesan A., Pluess M., Podolsky I.M., Prescott J., Qi D., Qi X., Raikou V.D., Ranft A., Rhodes J., Rotge J.-Y., Rowe A.D., Saggar M., Schuon R.A., Shahid S., Shalchyan V., Shirvalkar P., Shiryayev O., Singh J., Smout M.J., Soares A., Song C., Srivastava K., Srivastava R.K., Sun J., Szabo A., Szymanski W., Tai C.N.P., Takeuchi H., Tanadini-Lang S., Tang F., Tao W., Theron G., Tian C.F., Tian Y.-S., Tuttle L.M., Valenti A., Verlot P., Walker M., Wang J., Welter D., Winslade M., Wu D., Wu Y.-R., Xiao H., Xu B., Xu Z., Yang D., Yang M., Yankilevich P., You Y., Yu C., Zhan J., Zhang G., Zhang K., Zhang T., Zhao G., Zhao J., Zhou X., Zhu Z., Ajani P.A., Anazodo U.C., Bagloee S.A., Bail K., Bar I., Bathelt J., Benkeser D., Bernier M.L., Blanchard A.M., Boakye D.W., Bonatsos V., Boon M.H., Bouboulis G., Bromfield E., Brown J., Bul K.C.M., Burton K.J., Butkowski E.G., Carroll G., Chao F., Charrier E.E., Chen Y.-C., Chenguang, Choi J.R., Christoffersen T., Comel J.C., Cosse C., Cui Y., van Dessel P., Dhaval, Diodato D., Duffey M., Dutt A., Egea L.G., El-Said M., Faye M., Fernandez-Fernandez B., Foley K.G., Founou L.L., Fu F., Gadelkareem R.A., Galimov E., Garip G., Gemmill A., Gouil Q., Grey J., Gridneva Z., Grothe M.J., Grébert T., Guerrero F., Guignard L., Haenssgen M.J., Hasler D., Holgate J.Y., Huang A., Hulse-Kemp A.M., Jean-Quartier C., Jeon S.-M., Jia Y., Jutzeler C., Kalatzis P., Karim M., Karsay K., Keitel A., Kempe A., Keown J.R., Khoo C.M., Khwaja N., Kievit R.A., Kosanic S., Koutoukidis D.A., Kramer P., Kumar D., Kiraǧ N., Lanza G., Le T.D., Leem J.W., Leightley D., Leite A., Lercher L., Li Y., Lim R., Lima L.R.A., Lin L., Ling T., Liu Y., Liu Z., Lu Y., Lum F.M., Luo H., Machhi J., Macleod A., Macwan I., Madala H.R., Madani N., de Maio N., Makowiecki K., Mallinson D.J., Margelyte R., Maria C., Markonis Y., Marsili L., Mavoa S., McWilliams L., Megersa M., Souto-Maior C., Menichetti J., Mercieca-Bebber R., Miller J.J., Minde D.-P.M., Minges A., Mishra E., Mishra V.R., Moores C., Morrice N., Moskalensky A.E., Navarin N., Negera E., Nolet P., Nordberg A., Nordén R., Nowicki J.P., Olova N., Olszewski P., Onzima R., Pan C.-L., Park C., Park D.I., Park S., Patil C.D., Pedro S.A., Perry S.R., Peter J., Peterson B.M., Pezzuolo A., Pozdnyakov I., Qian S., Qin L., Rafe A., Raote I., Raza A., Rebl H., Refai O., Regan T., Richa T., Richardson M.F., Robinson K.R., Rossoni L., Rouet R., Safaei S., Schneeberger P.H.H., Schwotzer D., Sebastian A., Selinski J., Seltmann S., Sha F., Shalev N., Shang J.-L., Singer J., Singh M., Smith T., Solomon-Moore E., Song L., Soraggi S., Stanley R., Steckhan N., Strobl F., Subissi L., Supriyanto I., Surve C.R., Suzuki T., Syme C., Sörelius K., Tang Y., Tantawy M., Tennakoon S., Teseo S., Toelzer C., Tomov N., Tovar M., Tran L., Tripathi S., Tuladhar A.M., Ukubuiwe A.C., Ung C.O.L., Valgepea K., Vatanparast H., Vidal A., Wang Q., Watari R., Webster R., Wei J., Wibowo D., Wingenbach T.S.H., Xavier R.M., Xiao S., Xiong P., Xu S., Yao R., Yao W., Yin Q., Zaitsu M., Zeineb Z., Zhan X.-Y., Zhang R., Zhang W., Zheng S., Zhou B., Ahmad H., Akinwumi S.A., Albery G.F., Alhowimel A., Ali J., Alshehri M., Alsuhaibani M., Anikin A., Azubuike S.O., Bach-Mortensen A., Baltiansky L., Bartas M., Belachew K.Y., Bhardwaj V., Binder K., Bland N.S., Boah M., Bullen B., Calabrò G.E., Callahan T.J., Cao B., Chalmers K., Chang W., Che Z., Chen A.T.Y., Chen Z., Choi Y., Chowdhury M.A.K., Christensen M.R., Cooke R.S.C., Cottini M., Covington N.V., Cunningham C., Delarocque J., Devos L., Dhar A.R., Ding K.-F., Dong K., Dong Z., Dreyer N., Ekstrand C., Fardet T., Feleke B.E., Feurer T., Freitas A., Gao T., Gebremedhin, Giganti F., Grabowski P., Guerra-Mora J.R., Guo C., Guo X., Gupta H., He S., Heijne M., Heinemann S., Hogrebe A., Huang Z., Iskander-Rizk S., Iyer L.M., Jahan Y., James A.S., Joel E., Joffroy B., Jégousse C., Kambondo G., Karnati P., Kaya C., Ke A., Kelly D., Kickert R., Kidibule P.E., Kieselmann J.P., Kim H.J., Kitazawa T., Lamberts A., Liang H., Linn S.N., Litfin T., Liusuo W., Lygirou V., Mahato A.K., Mai Z.-M., Major R.W., Mali S., Mallis P., Mao W., Marvin-Dowle K., Mason L.D., Merideth B., Merino-Plaza M.J., Merlaen B., Messina R., Mishra A.K., Muhammad J., Musinguzi C., Nanou A., Naqash A., Nguyen J.T., Nguyen T.T.H., Ni D., Nida, Notcovich S., Ohst B., Ollivier Q.R., Osses D.F., Peng X., Plantinga A., Pulia M., Rafiq M., Raman A., Raucher-Chéné, Rawski R., Ray A., Razak L.A., Rudolf K., Rusch P., Sadoine M.L., Schmidt A., Schurr R., Searles S., Sharma S., Sheehan B., Shi C., Shohayeb B., Sommerlad A., Strehlow J., Sun X., Sundar R., Taherzadeh G., Tahir N.D.M., Tang J., Testa J., Tian Z., Tingting Q., Verheijen G.P., Vickstrom C., Wang T., Wang X., Wang Z., Wei P., Wilson A., Wyart, Yassine A.-A., Yousefzadeh A., Zare A., Zeng Z., Zhang H., Zhou J., Zhu D., Adamo V., Adeyemo A.A., Aggelidou M., Al-Owaifeer A.M., Al-Riyami A.Z., Alzghari S.K., Andersen V., Angus K., Asaduzzaman M., Asady H., Ato D., Bai X., Baines R.L., Ballantyne M., Ban B., Beck J., Ben-Nafa W., Black E., Blancher A., Blankstein R., Bodagh N., Borges P., Brooks A., Brox-Ponce J., Brunetti A., Canham C.D., Carninci P., Carvajal R., Chang S.C., Chao J., Chatterjee P., Chen L., Chhatriwalla A.K., Chikowe I., Chuang T.-J., Collevatti R.G., Cornejo D.A.V., Cuenda A., Dao M., Dauga D., Deng Z., Devkota K., Doan L.V., Elewa Y.H.A., Fan D., Faruk M., Feifei S., Ferguson T.S., Fleres F., Foster E.J., Foster S., Furer T., Gao Y., Garcia-Rivera E.J., Gazdar A., George R.B., Ghosh S., Gianchecchi E., Gleason J.M., Hackshaw A., Hall A., Hall R., Harper P., Hogg W.E., Huang G., Hunter K.E., Ijzerman A.P., Jesus C., Jian G., Lewis J.S., Jr., Kanj S.S., Kaur H., Kheir F., Kichatova V.S., Kiyani M., Klein R., Kovesi T., Kraschnewski J.L., Kumar A.P., Labutin D., Lazo-Langner A., Leclercq G., Li M., Li Q., Li T., Liao W.-T., Liao Z.-Y., Lin J., Lizer J., Lobreglio G., Lowies C., Lu C., Majeed H., Martin A., Martinez-Sobrido L., Meresh E., Middelveen M., Mohebbi A., Mota J., Mozaheb Z., Muyaya L., Nandhakumar A., Ng S.H.X., Obeidat M., Oh D.-H., Owais M., Pace-Asciak P., Panwar A., Patterson C., Penagos-Tabaree F., Pianosi P.T., Pinzi V., Pridans C., Psaroulaki A., Pujala R.K., Pulido-Arjona L., Qi P.-F., Rahman P., Rai N.K., Rassaf T., Refardt J., Ricciardi W., Riess O., Rovas A., Sacks F.M., Saleh S., Sampson C., Schmutz A., Sepanski R., Sharma N., Spearman P., Subramaniapillai M., Swali R., Tan C.M., Tellechea J.I., Thomas L.-M., Tong X., Vavvas D.G., Veys R., Vitriol V., Wang H.-D., Waugh J., Webb S.A., Williams B.A., Workman A.D., Xiang T., Xie L.-X., Xu T., Yang C., Yoon J.G., Yuan C.M., Zaritsky A., Zhao H., Zuckerman H., Lyu R., Pullan W., RELISH Consortium

المصدر: Database ; https://www.scopus.com/inward/record.uri?eid=2-s2.0-85082592913&doi=10.1093%2fdatabase%2fbaz085&partnerID=40&md5=3ac12f90c94597a4b51ea7b10caa0af0Test

مصطلحات موضوعية: article, benchmarking, human, medical research, Medical Subject Headings, Medline, nonhuman, okapi, plant seed, search engine, statistical bias, systematic review, Oxford University Press

الوصف: Document recommendation systems for locating relevant literature have mostly relied on methods developed a decade ago. This is largely due to the lack of a large offline gold-standard benchmark of relevant documents that cover a variety of research fields such that newly developed literature search techniques can be compared, improved and translated into practice. To overcome this bottleneck, we have established the RElevant LIterature SearcH consortium consisting of more than 1500 scientists from 84 countries, who have collectively annotated the relevance of over 180 000 PubMed-listed articles with regard to their respective seed (input) article/s. The majority of annotations were contributed by highly experienced, original authors of the seed articles. The collected data cover 76% of all unique PubMed Medical Subject Headings descriptors. No systematic biases were observed across different experience levels, research fields or time spent on annotations. More importantly, annotations of the same document pairs contributed by different scientists were highly concordant. We further show that the three representative baseline methods used to generate recommended articles for evaluation (Okapi Best Matching 25, Term Frequency-Inverse Document Frequency and PubMed Related Articles) had similar overall performances. Additionally, we found that these methods each tend to produce distinct collections of recommended articles, suggesting that a hybrid method may be required to completely capture all relevant articles. The established database server located at https://relishdb.ict.griffith.edu.auTest is freely available for the downloading of annotation data and the blind testing of new methods. We expect that this benchmark will be useful for stimulating the development of new powerful techniques for title and title/abstract-based search engines for relevant articles in biomedical science. © The Author(s) 2019. Published by Oxford University Press.

العلاقة: http://hdl.handle.net/11615/72169Test

الإتاحة: https://doi.org/10.1093/database/baz085Test
http://hdl.handle.net/11615/72169Test

View record in BASE

النص الكامل

4

Large expert-curated database for benchmarking document similarity detection in biomedical literature search

المؤلفون: Brown, P. Zhou, Y. Tan, A.-C. El-Esawi, M.A. Liehr, T. Blanck, O. Gladue, D.P. Almeida, G.M.F. Cernava, T. Sorzano, C.O. Yeung, A.W.K. Engel, M.S. Chandrasekaran, A.R. Muth, T. Staege, M.S. Daulatabad, S.V. Widera, D. Zhang, J. Meule, A. Honjo, K. Pourret, O. Yin, C.-C. Zhang, Z. Cascella, M. Flegel, W.A. Goodyear, C.S. van Raaij, M.J. Bukowy-Bieryllo, Z. Campana, L.G. Kurniawan, N.A. Lalaouna, D. Hüttner, F.J. Ammerman, B.A. Ehret, F. Cobine, P.A. Tan, E.-C. Han, H. Xia, W. McCrum, C. Dings, R.P.M. Marinello, F. Nilsson, H. Nixon, B. Voskarides, K. Yang, L. Costa, V.D. Bengtsson-Palme, J. Bradshaw, W. Grimm, D.G. Kumar, N. Martis, E. Prieto, D. Sabnis, S.C. Amer, S.E.D.R. Liew, A.W.C. Perco, P. Rahimi, F. Riva, G. Zhang, C. Devkota, H.P. Ogami, K. Basharat, Z. Fierz, W. Siebers, R. Tan, K.H. Boehme, K.A. Brenneisen, P. Brown, J.A.L. Dalrymple, B.P. Harvey, D.J. Ng, G. Werten, S. Bleackley, M. Dai, Z. Dhariwal, R. Gelfer, Y. Hartmann, M.D. Miotla, P. Tamaian, R. Govender, P. Gurney-Champion, O.J. Kauppila, J.H. Zhang, X. Echeverría, N. Subhash, S. Sallmon, H. Tofani, M. Bae, T. Bosch, O. Cuív, P.O. Danchin, A. Diouf, B. Eerola, T. Evangelou, E. Filipp, F. Klump, H. Kurgan, L. Smith, S.S. Terrier, O. Tuttle, N. Ascher, D.B. Janga, S.C. Schulte, L.N. Becker, D. Browngardt, C. Bush, S.J. Gaullier, G. Ide, K. Meseko, C. Werner, G.D.A. Zaucha, J. Al-Farha, A.A. Greenwald, N.F. Popoola, S.I. Rahman, S. Xu, J. Yang, S.Y. Hiroi, N. Alper, O.M. Baker, C.I. Bitzer, M. Chacko, G. Debrabant, B. Dixon, R. Forano, E. Gilliham, M. Kelly, S. Klempnauer, K.-H. Lidbury, B.A. Lin, M.Z. Lynch, I. Ma, W. Maibach, E.W. Mather, D.E. Nandakumar, K.S. Ohgami, R.S. Parchi, P. Tressoldi, P. Xue, Y. Armitage, C. Barraud, P. Chatzitheochari, S. Coelho, L.P. Diao, J. Doxey, A.C. Gobet, A. Hu, P. Kaiser, S. Mitchell, K.M. Salama, M.F. Shabalin, I.G. Song, H. Stevanovic, D. Yadollahpour, A. Zeng, E. Zinke, K. Alimba, C.G. Beyene, T.J. Cao, Z. Chan, S.S. Gatchell, M. Kleppe, A. 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Zaritsky, A. Zhang, Y. Zhao, H. Zuckerman, H. Lyu, R. Pullan, W. RELISH Consortium

الوصف: Document recommendation systems for locating relevant literature have mostly relied on methods developed a decade ago. This is largely due to the lack of a large offline gold-standard benchmark of relevant documents that cover a variety of research fields such that newly developed literature search techniques can be compared, improved and translated into practice. To overcome this bottleneck, we have established the RElevant LIterature SearcH consortium consisting of more than 1500 scientists from 84 countries, who have collectively annotated the relevance of over 180 000 PubMed-listed articles with regard to their respective seed (input) article/s. The majority of annotations were contributed by highly experienced, original authors of the seed articles. The collected data cover 76% of all unique PubMed Medical Subject Headings descriptors. No systematic biases were observed across different experience levels, research fields or time spent on annotations. More importantly, annotations of the same document pairs contributed by different scientists were highly concordant. We further show that the three representative baseline methods used to generate recommended articles for evaluation (Okapi Best Matching 25, Term Frequency-Inverse Document Frequency and PubMed Related Articles) had similar overall performances. Additionally, we found that these methods each tend to produce distinct collections of recommended articles, suggesting that a hybrid method may be required to completely capture all relevant articles. The established database server located at https://relishdb.ict.griffith.edu.auTest is freely available for the downloading of annotation data and the blind testing of new methods. We expect that this benchmark will be useful for stimulating the development of new powerful techniques for title and title/abstract-based search engines for relevant articles in biomedical science. © The Author(s) 2019. Published by Oxford University Press.

الوصول الحر: https://explore.openaire.eu/search/publication?articleId=od______2127::3883df6a9b857b1fe020dcaa348695c3Test
https://pergamos.lib.uoa.gr/uoa/dl/object/uoadl:3106365Test