المؤلفون: Lehtola, Juha-Matti, Kärkkäinen, Virve, Andberg, Sami, Hannonen, Sanna, Rusanen, Minna, Saari, Toni, Korhonen, Ville, Hokkanen, Laura, Hallikainen, Merja, Hänninen, Tuomo, Kaarniranta, Kai, Bednarik, Roman, Leinonen, Ville, Koivisto, Anne M.

المساهمون: Department of Psychology and Logopedics, University of Helsinki, Department of Neurosciences, Clinicum, Helsinki University Hospital Area, Neurologian yksikkö

مصطلحات موضوعية: 3112 Neurosciences, 3124 Neurology and psychiatry, 515 Psychology, Alzheimer's disease (AD), biomarker, eye tracking (ET), idiopathic normal pressure hydrocephalus (iNPH), King-Devick (KD), saccadic eye movements

الوصف: Background: Functional defects in eye movements and reduced reading speed in neurodegenerative diseases represent a potential new biomarker to support clinical diagnosis. We investigated whether computer-based eye-tracking (ET) analysis of the King-Devick (KD) test differentiates persons with idiopathic normal pressure hydrocephalus (iNPH) from cognitively unimpaired [control (CO)] and persons with Alzheimer's disease (AD). Methods: We recruited 68 participants (37 CO, 10 iNPH, and 21 AD) who underwent neurological examination, the Consortium to Establish a Registry for Alzheimer's Disease neuropsychological test battery (CERAD-NB), and a Clinical Dementia Rating interview. The KD reading test was performed using computer-based ET. We analyzed the total time used for the reading test, number of errors, durations of fixation and saccade, and saccade amplitudes. Results: The iNPH group significantly differed from the CO group in the KD test mean total time (CO 69.3 s, iNPH 87.3 s; P≤0.009) and eye-tracking recording of the mean saccade amplitude (CO 3.6 degree, iNPH 3.2 degree; P≤0.001). The AD group significantly differed from the CO group in each tested parameter. No significant differences were detected between the iNPH and AD groups. Conclusion: For the first time, we demonstrated altered reading ability and saccade amplitudes in patients with iNPH. ; Peer reviewed

وصف الملف: application/pdf

العلاقة: The authors thank all study participants, statistician Tuomas Selander and study nurses Ulla Vanhanen, Kati Mönttinen, Kristiina Holopainen, Tarja Lappalainen, and Marita Parviainen. The authors are grateful to the Juho and Lempi Pitkänen foundation, the Maire Taponen Foundation, Maud Kuistila Foundation, Finnish Cultural Foundation, Finnish Brain Foundation and Finnish Government Research Funding for financial support.; Lehtola , J-M , Kärkkäinen , V , Andberg , S , Hannonen , S , Rusanen , M , Saari , T , Korhonen , V , Hokkanen , L , Hallikainen , M , Hänninen , T , Kaarniranta , K , Bednarik , R , Leinonen , V & Koivisto , A M 2022 , ' Computer-based Eye-tracking Analysis of King-Devick Test Differentiates Persons with Idiopathic Normal Pressure Hydrocephalus from Cognitively Unimpaired ' , Alzheimer Disease and Associated Disorders , vol. 36 , no. 4 , pp. 340-346 . https://doi.org/10.1097/WAD.0000000000000527Test; ORCID: /0000-0001-8342-9248/work/129615356; ORCID: /0000-0001-7721-3336/work/130606708; 85143088755; c4b61cbd-6a88-4c59-a3c0-3cd47a10da40; http://hdl.handle.net/10138/354870Test; 000923752200010

الإتاحة: http://hdl.handle.net/10138/354870Test

المؤلفون: Hannonen, Sanna, Andberg, Sami, Kärkkäinen, Virve, Rusanen, Minna, Lehtola, Juha-Matti, Saari, Toni, Korhonen, Ville, Hokkanen, Laura, Hallikainen, Merja, Hänninen, Tuomo, Leinonen, Ville, Kaarniranta, Kai, Bednarik, Roman, Koivisto, Anne M.

المساهمون: Department of Psychology and Logopedics, University of Helsinki, Department of Neurosciences, HUS Neurocenter, Neurologian yksikkö, Geriatrian yksikkö

مصطلحات موضوعية: Alzheimer's disease, biomarker, CERAD, eye tracking, King-Devick, mild cognitive impairment, saccadic eye movements, CERAD NEUROPSYCHOLOGICAL BATTERY, KING-DEVICK TEST, ASSOCIATION WORKGROUPS, DIAGNOSTIC GUIDELINES, NATIONAL INSTITUTE, RECOMMENDATIONS, DEMENTIA, ALLELE, 3112 Neurosciences, 3124 Neurology and psychiatry, 515 Psychology, Neuropsychology

الوصف: Background: Wide-ranging functional defects in eye movements have been reported in Alzheimer's disease (AD) dementia. The detection of abnormal eye movements and reading problems may identify persons at risk of AD when clear clinical symptoms are lacking. Objective: To examine whether computer-based eye-tracking (ET) analysis of King-Devick (KD) test results differentiates cognitively healthy persons from persons with minor problems in cognitive testing or diagnosed mild AD. Methods: We recruited 78 participants (57 non-demented, 21 with mild AD) who underwent neurological examination, the Consortium to Establish a Registry for Alzheimer's Disease neuropsychological test battery (CERAD-NB), and a Clinical Dementia Rating (CDR) interview. The non-demented participants were further divided into control (normal CERAD subtests, mean MMSE= 28) and objective mild cognitive impairment (MCI; decline in at least one CERAD memory score, mean MMSE= 27) groups. The KD reading test was performed using computer-based ET. The total time used for the reading test, errors made, fixation and saccade durations, and saccade amplitudes were analyzed. Results: We found significant differences between the control, objective MCI, and AD groups in regard to the mean saccade amplitude (3.58, 3.33, and 3.21 ms, respectively, p < 0.03) and duration (27.1, 25.3, and 24.8 ms, respectively, p < 0.05). The KD error scores in the AD group differed significantly (p < 0.01) from the other groups. Conclusion: Computed ET analysis of the KD test may help detect persons with objective MCI early when clear clinical symptoms are lacking. The portable device for ET is easy to use in primary health care memory clinics. ; Peer reviewed

وصف الملف: application/pdf

العلاقة: We are deeply grateful to all of the study participants. We also thank BEGAD research project study nurses Ulla Vanhanen, Kati Monttinen, and Kristiina Holopainen for recruiting the study participants. We thank biostatistician Tuomas Selander for help with the statistical analysis. This work was supported by Juho and Lempi Pitkanen Foundation.; Hannonen , S , Andberg , S , Kärkkäinen , V , Rusanen , M , Lehtola , J-M , Saari , T , Korhonen , V , Hokkanen , L , Hallikainen , M , Hänninen , T , Leinonen , V , Kaarniranta , K , Bednarik , R & Koivisto , A M 2022 , ' Shortening of Saccades as a Possible Easy-to-Use Biomarker to Detect Risk of Alzheimer's Disease ' , Journal of Alzheimer's Disease , vol. 88 , no. 2 , pp. 609-618 . https://doi.org/10.3233/JAD-215551Test; ORCID: /0000-0001-8342-9248/work/117173311; cf23b6b3-9995-43a9-a640-5ab028bd110c; http://hdl.handle.net/10138/346799Test; 000828034300020

الإتاحة: http://hdl.handle.net/10138/346799Test

المؤلفون: Lehtola, Juha-Matti, Kärkkäinen, Virve, Andberg, Sami, Hannonen, Sanna, Rusanen, Minna, Saari, Toni, Korhonen, Ville, Hokkanen, Laura, Hallikainen, Merja, Hänninen, Tuomo, Kaarniranta, Kai, Bednarik, Roman, Leinonen, Ville, Koivisto, Anne M.

المصدر: Alzheimer Disease & Associated Disorders ; volume 36, issue 4, page 340-346 ; ISSN 0893-0341

الوصف: Background: Functional defects in eye movements and reduced reading speed in neurodegenerative diseases represent a potential new biomarker to support clinical diagnosis. We investigated whether computer-based eye-tracking (ET) analysis of the King-Devick (KD) test differentiates persons with idiopathic normal pressure hydrocephalus (iNPH) from cognitively unimpaired [control (CO)] and persons with Alzheimer’s disease (AD). Methods: We recruited 68 participants (37 CO, 10 iNPH, and 21 AD) who underwent neurological examination, the Consortium to Establish a Registry for Alzheimer’s Disease neuropsychological test battery (CERAD-NB), and a Clinical Dementia Rating interview. The KD reading test was performed using computer-based ET. We analyzed the total time used for the reading test, number of errors, durations of fixation and saccade, and saccade amplitudes. Results: The iNPH group significantly differed from the CO group in the KD test mean total time (CO 69.3 s, iNPH 87.3 s; P ≤0.009) and eye-tracking recording of the mean saccade amplitude (CO 3.6 degree, iNPH 3.2 degree; P ≤0.001). The AD group significantly differed from the CO group in each tested parameter. No significant differences were detected between the iNPH and AD groups. Conclusion: For the first time, we demonstrated altered reading ability and saccade amplitudes in patients with iNPH.

الإتاحة: https://doi.org/10.1097/wad.0000000000000527Test

المؤلفون: Moustafa, Rasha Sameer, Karhu, Harri, Andberg, Sami, Bednarik, Roman

المصدر: 2023 Symposium on Eye Tracking Research and Applications

الإتاحة: https://doi.org/10.1145/3588015.3590110Test

المؤلفون: Esteban, Oscar, Markiewicz, Christopher J., Burns, Christopher, Goncalves, Mathias, Jarecka, Dorota, Ziegler, Erik, Berleant, Shoshana, Ellis, David Gage, Pinsard, Basile, Madison, Cindee, Waskom, Michael, Notter, Michael Philipp, Clark, Daniel, Manhães-Savio, Alexandre, Clark, Dav, Jordan, Kesshi, Dayan, Michael, Halchenko, Yaroslav O., Loney, Fred, Norgaard, Martin, Salo, Taylor, Dewey, Blake E, Johnson, Hans, Bougacha, Salma, Keshavan, Anisha, Yvernault, Benjamin, Hamalainen, Carlo, Christian, Horea, Ćirić , Rastko, Dubois, Mathieu, Joseph, Michael, Cipollini, Ben, Tilley II, Steven, Visconti di Oleggio Castello, Matteo, De La Vega, Alejandro, Wong, Jason, Kaczmarzyk, Jakub, Huntenburg, Julia M., Clark, Michael G., Kent, James D., Benderoff, Erin, Erickson, Drew, Dias, Maria de Fatima, Hanke, Michael, Giavasis, Steven, Moloney, Brendan, Nichols, B. Nolan, Tungaraza, Rosalia, Dell'Orco, Andrea, Frohlich, Caroline, Wassermann, Demian, de Hollander, Gilles, Koudoro, Serge, Eshaghi, Arman, Millman, Jarrod, Mancini, Matteo, Close, Thomas, Nielson, Dylan M., Varoquaux, Gael, Waller, Lea, Watanabe, Aimi, Mordom, David, Guillon, Jérémy, Robert-Fitzgerald, Timothy, Chetverikov, Andrey, Rokem, Ariel, Acland, Benjamin, Forbes, Jessica, Markello, Ross, Gillman, Ashley, Bernardoni, Fabio, Kong, Xiang-Zhen, Geisler, Daniel, Salvatore, John, Gramfort, Alexandre, Doll, Anna, Buchanan, Colin, DuPre, Elizabeth, Liu, Siqi, Schaefer, Alexander, Kleesiek, Jens, Sikka, Sharad, Schwartz, Yannick, Ghayoor, Ali, Lee, John A., Mattfeld, Aaron, Richie-Halford, Adam, Liem, Franz, Perez-Guevara, Martin Felipe, Heinsfeld, Anibal Sólon, Haselgrove, Christian, Durnez, Joke, Lampe, Leonie, Poldrack, Russell, Glatard, Tristan, Baratz, Zvi, Tabas, Alejandro, Cumba, Chad, Pérez-García, Fernando, Blair, Ross, Iqbal, Shariq, Welch, David, Contier, Oliver, Triplett, William, Craddock, R. Cameron, Correa, Carlos, Papadopoulos Orfanos, Dimitri, Stadler, Jörg, Warner, Joshua, Sisk, Lucinda M., Falkiewicz, Marcel, Sharp, Paul, Rothmei, Simon, Kim, Sin, Weinstein, Alejandro, Kahn, Ari E., Kastman, Erik, Bottenhorn, Katherine, Grignard, Martin, Perkins, L. Nathan, Zhou, Dale, Bielievtsov, Dmytro, Ben-Zvi, Gal, Cooper, Gavin, Stojic, Hrvoje, Hui Qian, Tan, Linkersdörfer, Janosch, Renfro, Mandy, Hinds, Oliver, Stanley, Olivia, Küttner, René, Pauli, Wolfgang M., Xie, Xihe, Glen, Daniel, Kimbler, Adam, Meyers, Benjamin, Tarbert, Claire, Ginsburg, Daniel, Haehn, Daniel, Margulies, Daniel S., Condamine, Eric, Ma, Feilong, Malone, Ian B., Snoek, Lukas, Brett, Matthew, Cieslak, Matthew, Hallquist, Michael, Molina-Romero, Miguel, Bilgel, Murat, Lee, Nat, Kuntke, Paul, Jalan, Raunak, Inati, Souheil, Gerhard, Stephan, Mathotaarachchi, Sulantha, Saase, Victor, Van, Andrew, Steele, Christopher John, Ort, Eduard, Lerma-Usabiaga, Garikoitz, Vaillant, Ghislain, Schwabacher, Isaac, Arias, Jaime, Lai, Jeff, Pellman, John, Huguet, Jordi, Junhao WEN, Leinweber, Katrin, Chawla, Kshitij, Weninger, Leon, Modat, Marc, Mukhometzianov, Rinat, Harms, Robbert, Andberg, Sami Kristian, Matsubara, K, González Orozco, Abel A., Routier, Alexandre, Marina, Ana, Davison, Andrew, Floren, Andrew, Park, Anne, Frederick, Blaise, Cheung, Brian, McDermottroe, Conor, McNamee, Daniel, Shachnev, Dmitry, Vogel, Dorian, Flandin, Guillaume, Jones, Henry, Gonzalez, Ivan, Varada, Jan, Schlamp, Kai, Podranski, Kornelius, Huang, Lijie, Noel, Maxime, Pannetier, Nicolas, Numssen, Ole, Khanuja, Ranjeet, Urchs, Sebastian, Shim, Sunjae, Nickson, Thomas, Broderick, William, Tambini, Arielle, Mihai, Paul Glad, Gorgolewski, Krzysztof J., Ghosh, Satrajit

مصطلحات موضوعية: neuroimaging, workflow, pipeline

الوصف: 1.8.0 (May 10, 2022) New feature release in the 1.8.x series. The primary new features are a batch of PETSurfer interfaces. This release drops support for Python < 3.7 and Numpy < 1.17, triggering a minor version bump. Additionally, matplotlib < 2.1 will stop working with some interfaces, but more recent versions will start working. Full changelog: https://github.com/nipy/nipype/milestone/1.8.0?closed=1Test FIX: Change plt.hist() argument from deprecated 'normed' to 'density' (https://github.com/nipy/nipype/pull/3455Test) ENH: Add random seed option to ANTs registration (https://github.com/nipy/nipype/pull/3463Test) ENH: Add PETsurfer interfaces (https://github.com/nipy/nipype/pull/3437Test) ENH: Add Text2Vest and Vest2Text interfaces (https://github.com/nipy/nipype/pull/3447Test) REF: Optimize ICC_rep_anova with a memoized helper function (https://github.com/nipy/nipype/pull/3454Test) REF: Rearranging matmul order and using hermitian flag in ICC_rep_anova (https://github.com/nipy/nipype/pull/3453Test) MNT: Drop distutils (https://github.com/nipy/nipype/pull/3458Test) CI: Cache test data (https://github.com/nipy/nipype/pull/3459Test) New Contributors @mnoergaard made their first contribution in https://github.com/nipy/nipype/pull/3437Test @kristoferm94 made their first contribution in https://github.com/nipy/nipype/pull/3453Test @sjshim made their first contribution in https://github.com/nipy/nipype/pull/3455Test @ghisvail made their first contribution in https://github.com/nipy/nipype/pull/3463Test Full Changelog: https://github.com/nipy/nipype/compare/1.7.1.1.8.0Test

العلاقة: https://github.com/nipy/nipype/tree/1.8.0Test; https://zenodo.org/record/6555083Test; https://doi.org/10.5281/zenodo.6555083Test; oai:zenodo.org:6555083

الإتاحة: https://doi.org/10.5281/zenodo.6555083Test
https://doi.org/10.5281/zenodo.596855Test
https://zenodo.org/record/6555083Test

المؤلفون: Esteban, Oscar, Markiewicz, Christopher J., Burns, Christopher, Goncalves, Mathias, Jarecka, Dorota, Ziegler, Erik, Berleant, Shoshana, Ellis, David Gage, Pinsard, Basile, Madison, Cindee, Waskom, Michael, Notter, Michael Philipp, Clark, Daniel, Manhães-Savio, Alexandre, Clark, Dav, Jordan, Kesshi, Dayan, Michael, Halchenko, Yaroslav O., Loney, Fred, Salo, Taylor, Dewey, Blake E, Johnson, Hans, Bougacha, Salma, Keshavan, Anisha, Yvernault, Benjamin, Hamalainen, Carlo, Christian, Horea, Ćirić , Rastko, Dubois, Mathieu, Joseph, Michael, Cipollini, Ben, Tilley II, Steven, Visconti di Oleggio Castello, Matteo, De La Vega, Alejandro, Wong, Jason, Kaczmarzyk, Jakub, Huntenburg, Julia M., Clark, Michael G., Benderoff, Erin, Erickson, Drew, Kent, James D., Hanke, Michael, Giavasis, Steven, Moloney, Brendan, Nichols, B. Nolan, Tungaraza, Rosalia, Frohlich, Caroline, Wassermann, Demian, de Hollander, Gilles, Dell'Orco, Andrea, Eshaghi, Arman, Millman, Jarrod, Mancini, Matteo, Close, Thomas, Nielson, Dylan M., Varoquaux, Gael, Watanabe, Aimi, Mordom, David, Waller, Lea, Machado, Fátima, Guillon, Jérémy, Koudoro, Serge, Robert-Fitzgerald, Timothy, Chetverikov, Andrey, Rokem, Ariel, Acland, Benjamin, Forbes, Jessica, Markello, Ross, Gillman, Ashley, Kong, Xiang-Zhen, Geisler, Daniel, Salvatore, John, Gramfort, Alexandre, Doll, Anna, Buchanan, Colin, DuPre, Elizabeth, Liu, Siqi, Schaefer, Alexander, Kleesiek, Jens, Sikka, Sharad, Schwartz, Yannick, Ghayoor, Ali, Lee, John A., Mattfeld, Aaron, Richie-Halford, Adam, Liem, Franz, Perez-Guevara, Martin Felipe, Heinsfeld, Anibal Sólon, Haselgrove, Christian, Durnez, Joke, Lampe, Leonie, Poldrack, Russell, Glatard, Tristan, Tabas, Alejandro, Cumba, Chad, Pérez-García, Fernando, Blair, Ross, Iqbal, Shariq, Baratz, Zvi, Welch, David, Contier, Oliver, Triplett, William, Craddock, R. Cameron, Correa, Carlos, Papadopoulos Orfanos, Dimitri, Stadler, Jörg, Warner, Joshua, Sisk, Lucinda M., Falkiewicz, Marcel, Sharp, Paul, Rothmei, Simon, Kim, Sin, Weinstein, Alejandro, Kahn, Ari E., Kastman, Erik, Bottenhorn, Katherine, Grignard, Martin, Perkins, L. Nathan, Zhou, Dale, Bielievtsov, Dmytro, Ben-Zvi, Gal, Cooper, Gavin, Stojic, Hrvoje, Linkersdörfer, Janosch, Renfro, Mandy, Hinds, Oliver, Stanley, Olivia, Küttner, René, Pauli, Wolfgang M., Glen, Daniel, Kimbler, Adam, Meyers, Benjamin, Tarbert, Claire, Ginsburg, Daniel, Haehn, Daniel, Margulies, Daniel S., Condamine, Eric, Ma, Feilong, Malone, Ian B., Snoek, Lukas, Brett, Matthew, Cieslak, Matthew, Hallquist, Michael, Molina-Romero, Miguel, Bilgel, Murat, Lee, Nat, Jalan, Raunak, Inati, Souheil, Gerhard, Stephan, Mathotaarachchi, Sulantha, Saase, Victor, Van, Andrew, Steele, Christopher John, Ort, Eduard, Lerma-Usabiaga, Garikoitz, Schwabacher, Isaac, Arias, Jaime, Lai, Jeff, Pellman, John, Huguet, Jordi, Junhao WEN, Leinweber, Katrin, Chawla, Kshitij, Weninger, Leon, Modat, Marc, Harms, Robbert, Andberg, Sami Kristian, Matsubara, K, González Orozco, Abel A., Routier, Alexandre, Marina, Ana, Davison, Andrew, Floren, Andrew, Park, Anne, Cheung, Brian, McDermottroe, Conor, McNamee, Daniel, Shachnev, Dmitry, Vogel, Dorian, Flandin, Guillaume, Jones, Henry, Gonzalez, Ivan, Varada, Jan, Schlamp, Kai, Podranski, Kornelius, Huang, Lijie, Noel, Maxime, Pannetier, Nicolas, Numssen, Ole, Khanuja, Ranjeet, Mukhometzianov, Rinat, Urchs, Sebastian, Nickson, Thomas, Broderick, William, Xie, Xihe, Tambini, Arielle, Mihai, Paul Glad, Gorgolewski, Krzysztof J., Ghosh, Satrajit

مصطلحات موضوعية: neuroimaging, workflow, pipeline

الوصف: 1.7.0 (October 20, 2021) New feature release in the 1.7.x series. (Full changelog FIX: Make ants.LaplacianThickness output_image a string, not file (https://github.com/nipy/nipype/pull/3393Test) FIX: coord for mrconvert (https://github.com/nipy/nipype/pull/3369Test) FIX: antsRegistration allows the restrict_deformation to be float (https://github.com/nipy/nipype/pull/3387Test) FIX: Also allow errno.EBUSY during emptydirs on NFS (https://github.com/nipy/nipype/pull/3357Test) FIX: Removed exists=True from MathsOutput (https://github.com/nipy/nipype/pull/3385Test) FIX: Extension not extensions, after pybids v0.9 (https://github.com/nipy/nipype/pull/3380Test) ENH: Add CAT12 SANLM denoising filter (https://github.com/nipy/nipype/pull/3374Test) ENH: Add expected steps for FreeSurfer 7 recon-all (https://github.com/nipy/nipype/pull/3389Test) ENH: Stop printing false positive differences when logging cached nodes (https://github.com/nipy/nipype/pull/3376Test) ENH: Add new flags to MRtrix/preprocess.py (DWI2Tensor, MRtransform) (https://github.com/nipy/nipype/pull/3365Test) ENH: verbose input should not be hashed in ants.Registration (https://github.com/nipy/nipype/pull/3377Test) REF: Clean-up the BaseInterface run() function using context (https://github.com/nipy/nipype/pull/3347Test) DOC: Fix typo in README (https://github.com/nipy/nipype/pull/3386Test) STY: Make private member name consistent with the rest of them (https://github.com/nipy/nipype/pull/3346Test) MNT: Simplify interface execution and better error handling of Node (https://github.com/nipy/nipype/pull/3349Test) MNT: Add user name and email to Docker to appease git/annex/datalad (https://github.com/nipy/nipype/pull/3378Test) CI: Update CircleCI machine image (https://github.com/nipy/nipype/pull/3391Test)

العلاقة: https://github.com/nipy/nipype/tree/1.7.0Test; https://zenodo.org/record/5585697Test; https://doi.org/10.5281/zenodo.5585697Test; oai:zenodo.org:5585697

الإتاحة: https://doi.org/10.5281/zenodo.5585697Test
https://doi.org/10.5281/zenodo.596855Test
https://zenodo.org/record/5585697Test

المؤلفون: Esteban, Oscar, Markiewicz, Christopher J., Burns, Christopher, Goncalves, Mathias, Jarecka, Dorota, Ziegler, Erik, Berleant, Shoshana, Ellis, David Gage, Pinsard, Basile, Madison, Cindee, Waskom, Michael, Notter, Michael Philipp, Clark, Daniel, Manhães-Savio, Alexandre, Clark, Dav, Jordan, Kesshi, Dayan, Michael, Halchenko, Yaroslav O., Loney, Fred, Salo, Taylor, Dewey, Blake E, Johnson, Hans, Bougacha, Salma, Keshavan, Anisha, Yvernault, Benjamin, Hamalainen, Carlo, Christian, Horea, Ćirić , Rastko, Dubois, Mathieu, Joseph, Michael, Cipollini, Ben, Tilley II, Steven, Visconti di Oleggio Castello, Matteo, Wong, Jason, De La Vega, Alejandro, Kaczmarzyk, Jakub, Huntenburg, Julia M., Clark, Michael G., Benderoff, Erin, Erickson, Drew, Kent, James D., Hanke, Michael, Giavasis, Steven, Moloney, Brendan, Nichols, B. Nolan, Tungaraza, Rosalia, Frohlich, Caroline, Wassermann, Demian, de Hollander, Gilles, Eshaghi, Arman, Millman, Jarrod, Mancini, Matteo, Nielson, Dylan M., Varoquaux, Gael, Watanabe, Aimi, Mordom, David, Guillon, Jérémy, Koudoro, Serge, Chetverikov, Andrey, Rokem, Ariel, Acland, Benjamin, Forbes, Jessica, Markello, Ross, Gillman, Ashley, Kong, Xiang-Zhen, Geisler, Daniel, Salvatore, John, Gramfort, Alexandre, Doll, Anna, Buchanan, Colin, DuPre, Elizabeth, Liu, Siqi, Schaefer, Alexander, Kleesiek, Jens, Sikka, Sharad, Schwartz, Yannick, Lee, John A., Mattfeld, Aaron, Richie-Halford, Adam, Liem, Franz, Perez-Guevara, Martin Felipe, Heinsfeld, Anibal Sólon, Haselgrove, Christian, Durnez, Joke, Lampe, Leonie, Poldrack, Russell, Glatard, Tristan, Tabas, Alejandro, Cumba, Chad, Pérez-García, Fernando, Blair, Ross, Iqbal, Shariq, Welch, David, Triplett, William, Ghayoor, Ali, Craddock, R. Cameron, Correa, Carlos, Papadopoulos Orfanos, Dimitri, Stadler, Jörg, Warner, Joshua, Sisk, Lucinda M., Falkiewicz, Marcel, Sharp, Paul, Rothmei, Simon, Kim, Sin, Weinstein, Alejandro, Kahn, Ari E., Kastman, Erik, Bottenhorn, Katherine, Grignard, Martin, Perkins, L. Nathan, Contier, Oliver, Zhou, Dale, Bielievtsov, Dmytro, Cooper, Gavin, Stojic, Hrvoje, Linkersdörfer, Janosch, Waller, Lea, Renfro, Mandy, Hinds, Oliver, Stanley, Olivia, Küttner, René, Pauli, Wolfgang M., Glen, Daniel, Kimbler, Adam, Meyers, Benjamin, Tarbert, Claire, Ginsburg, Daniel, Haehn, Daniel, Margulies, Daniel S., Ma, Feilong, Malone, Ian B., Snoek, Lukas, Brett, Matthew, Cieslak, Matthew, Hallquist, Michael, Molina-Romero, Miguel, Bilgel, Murat, Lee, Nat, Inati, Souheil, Gerhard, Stephan, Mathotaarachchi, Sulantha, Saase, Victor, Van, Andrew, Steele, Christopher John, Ort, Eduard, Condamine, Eric, Lerma-Usabiaga, Garikoitz, Schwabacher, Isaac, Arias, Jaime, Lai, Jeff, Pellman, John, Huguet, Jordi, Junhao WEN, Leinweber, Katrin, Chawla, Kshitij, Weninger, Leon, Modat, Marc, Harms, Robbert, Andberg, Sami Kristian, Baratz, Zvi, Matsubara, K, González Orozco, Abel A., Marina, Ana, Davison, Andrew, Floren, Andrew, Park, Anne, Cheung, Brian, McDermottroe, Conor, McNamee, Daniel, Shachnev, Dmitry, Flandin, Guillaume, Gonzalez, Ivan, Varada, Jan, Schlamp, Kai, Podranski, Kornelius, Huang, Lijie, Noel, Maxime, Crusoe, Michael R., Pannetier, Nicolas, Khanuja, Ranjeet, Urchs, Sebastian, Nickson, Thomas, Broderick, William, Tambini, Arielle, Mihai, Paul Glad, Gorgolewski, Krzysztof J., Ghosh, Satrajit

مصطلحات موضوعية: neuroimaging, workflow, pipeline

الوصف: 1.5.1 (August 16, 2020) Bug-fix release in the 1.5.x series. This release includes small updates to ANTs utilities that lie somewhere between bug fixes and enhancements. (Full changelog) FIX: Warn for min/max_ver traits when tool version can't be parsed (#3241) FIX: Serialize all interface arguments when exporting workflows (#3240) FIX: Permit identity transforms in list of transforms given to ants.ApplyTransforms (#3237) FIX: ANTs' utilities revision - bug fixes and add more operations to ants.ImageMath (#3236) DOC: Skip BIDSDataGrabber doctest if pybids is missing (#3224)

العلاقة: https://github.com/nipy/nipype/tree/1.5.1Test; https://zenodo.org/record/4035081Test; https://doi.org/10.5281/zenodo.4035081Test; oai:zenodo.org:4035081

الإتاحة: https://doi.org/10.5281/zenodo.4035081Test
https://doi.org/10.5281/zenodo.596855Test
https://zenodo.org/record/4035081Test

المؤلفون: Esteban, Oscar, Markiewicz, Christopher J., Jarecka, Dorota, Ziegler, Erik, Johnson, Hans, Burns, Christopher, Manhães-Savio, Alexandre, Hamalainen, Carlo, Notter, Michael Philipp, Yvernault, Benjamin, Ellis, David Gage, Salo, Taylor, Goncalves, Mathias, Jordan, Kesshi, Waskom, Michael, Wong, Jason, Benderoff, Erin, Clark, Daniel, Loney, Fred, Dewey, Blake E, Nielson, Dylan M., Madison, Cindee, Bougacha, Salma, Ćirić , Rastko, Clark, Michael G., Modat, Marc, Dayan, Michael, Clark, Dav, Keshavan, Anisha, Visconti di Oleggio Castello, Matteo, Pinsard, Basile, Gramfort, Alexandre, Halchenko, Yaroslav O., Christian, Horea, Berleant, Shoshana, Joseph, Michael, Guillon, Jérémy, Rokem, Ariel, Koudoro, Serge, Markello, Ross, DuPre, Elizabeth, Kaczmarzyk, Jakub, Moloney, Brendan, Cipollini, Ben, Varoquaux, Gael, Wassermann, Demian, Hanke, Michael, de Hollander, Gilles, Mordom, David, Gillman, Ashley, Buchanan, Colin, Tabas, Alejandro, Tungaraza, Rosalia, Pauli, Wolfgang M., Sikka, Sharad, Forbes, Jessica, Mancini, Matteo, Iqbal, Shariq, Schwartz, Yannick, Richie-Halford, Adam, Malone, Ian B., Dubois, Mathieu, Frohlich, Caroline, Welch, David, Bottenhorn, Katherine, Watanabe, Aimi, Huntenburg, Julia M., Cumba, Chad, Nichols, B. Nolan, De La Vega, Alejandro, Eshaghi, Arman, Heinsfeld, Anibal Sólon, Ginsburg, Daniel, Schaefer, Alexander, Kastman, Erik, Acland, Benjamin, Liem, Franz, Kent, James, Kleesiek, Jens, Lee, John A., Erickson, Drew, Giavasis, Steven, Correa, Carlos, Ghayoor, Ali, Küttner, René, Perez-Guevara, Martin Felipe, Millman, Jarrod, Lai, Jeff, Zhou, Dale, Blair, Ross, Haselgrove, Christian, Tilley II, Steven, Renfro, Mandy, Liu, Siqi, Kahn, Ari E., Sisk, Lucinda M., Kim, Sin, Pérez-García, Fernando, Triplett, William, Lampe, Leonie, Kong, Xiang-Zhen, Hallquist, Michael, Chetverikov, Andrey, Grignard, Martin, Ma, Feilong, Cieslak, Matthew, Chawla, Kshitij, Salvatore, John, Park, Anne, Glatard, Tristan, Poldrack, Russell, Craddock, R. Cameron, Hinds, Oliver, Bilgel, Murat, Leinweber, Katrin, Inati, Souheil, Perkins, L. Nathan, Snoek, Lukas, Weninger, Leon, Cooper, Gavin, Mattfeld, Aaron, Matsubara, K, Noel, Maxime, Junhao WEN, Stadler, Jörg, Cheung, Brian, Urchs, Sebastian, Stanley, Olivia, Durnez, Joke, Condamine, Eric, Geisler, Daniel, Floren, Andrew, Gerhard, Stephan, Molina-Romero, Miguel, Haehn, Daniel, Weinstein, Alejandro, Tambini, Arielle, Broderick, William, Rothmei, Simon, Andberg, Sami Kristian, Khanuja, Ranjeet, Schlamp, Kai, Arias, Jaime, Papadopoulos Orfanos, Dimitri, Tarbert, Claire, Harms, Robbert, Sharp, Paul, Crusoe, Michael R., Brett, Matthew, Falkiewicz, Marcel, Podranski, Kornelius, Linkersdörfer, Janosch, Flandin, Guillaume, Lerma-Usabiaga, Garikoitz, Ort, Eduard, Shachnev, Dmitry, McNamee, Daniel, Meyers, Benjamin, Van, Andrew, Davison, Andrew, Bielievtsov, Dmytro, Steele, Christopher John, Huang, Lijie, Gonzalez, Ivan, Warner, Joshua, Margulies, Daniel S., Contier, Oliver, Marina, Ana, Saase, Victor, Nickson, Thomas, Varada, Jan, Schwabacher, Isaac, Pellman, John, Pannetier, Nicolas, McDermottroe, Conor, Mihai, Paul Glad, Gorgolewski, Krzysztof J., Ghosh, Satrajit

مصطلحات موضوعية: neuroimaging, workflow, pipeline

الوصف: 1.3.0-rc1 (October 8, 2019) Release candidate for Nipype 1.3.0, released off-schedule to enable testing and allow downstream projects to move off of 1.2.3. Final release scheduled for Monday, October 28. Full changelog FIX: Restore AFNICommand._get_fname, required by some interfaces (https://github.com/nipy/nipype/pull/3071Test) FIX: Remove asynchronous chdir callback (https://github.com/nipy/nipype/pull/3060Test) FIX: Minimize scope for directory changes while loading results file (https://github.com/nipy/nipype/pull/3061Test) ENH: Add precommit information for contributors and pre-commit style (https://github.com/nipy/nipype/pull/3063Test) ENH: Delay etelemetry for non-interactive sessions, report bad versions (https://github.com/nipy/nipype/pull/3049Test) ENH: Run memoized check_version at REPL import, Node/Workflow/Interface init (https://github.com/nipy/nipype/pull/30Test) RF: Provide functions to augment old Path.mkdir, Path.resolve methods (https://github.com/nipy/nipype/pull/3050Test) RF: Redirect nipype.workflows to niflow.nipype1.workflows (https://github.com/nipy/nipype/pull/3067Test) TST: Skip dcm2niix test if data fails to download (https://github.com/nipy/nipype/pull/3059Test) TST: dcm2niix test fix (https://github.com/nipy/nipype/pull/3058Test) MAINT: Drop Python 3.4 support (https://github.com/nipy/nipype/pull/3062Test) CI: make specs on Travis (https://github.com/nipy/nipype/pull/3066Test)

العلاقة: https://github.com/nipy/nipype/tree/1.3.0rc1Test; https://zenodo.org/record/3476537Test; https://doi.org/10.5281/zenodo.3476537Test; oai:zenodo.org:3476537

الإتاحة: https://doi.org/10.5281/zenodo.3476537Test
https://doi.org/10.5281/zenodo.596855Test
https://zenodo.org/record/3476537Test

المؤلفون: Gorgolewski, Krzysztof J., Esteban, Oscar, Markiewicz, Christopher J., Ziegler, Erik, Ellis, David Gage, Jarecka, Dorota, Notter, Michael Philipp, Johnson, Hans, Burns, Christopher, Manhães-Savio, Alexandre, Hamalainen, Carlo, Yvernault, Benjamin, Salo, Taylor, Goncalves, Mathias, Jordan, Kesshi, Waskom, Michael, Wong, Jason, Modat, Marc, Loney, Fred, Clark, Daniel, Nielson, Dylan M., Dewey, Blake E, Madison, Cindee, Bougacha, Salma, Clark, Michael G., Dayan, Michael, Visconti di Oleggio Castello, Matteo, Clark, Dav, Keshavan, Anisha, Pinsard, Basile, Gramfort, Alexandre, Berleant, Shoshana, Halchenko, Yaroslav O., Christian, Horea, Cipollini, Ben, Guillon, Jérémy, Markello, Ross, Rokem, Ariel, DuPre, Elizabeth, Kaczmarzyk, Jakub, Moloney, Brendan, Varoquaux, Gael, Wassermann, Demian, Hanke, Michael, de Hollander, Gilles, Mordom, David, Gillman, Ashley, Buchanan, Colin, Tabas, Alejandro, Tungaraza, Rosalia, Pauli, Wolfgang M., Sikka, Sharad, Mancini, Matteo, Forbes, Jessica, Iqbal, Shariq, Richie-Halford, Adam, Schwartz, Yannick, Malone, Ian B., Dubois, Mathieu, Heinsfeld, Anibal Sólon, Frohlich, Caroline, Welch, David, Bottenhorn, Katherine, Kent, James, De La Vega, Alejandro, Watanabe, Aimi, Huntenburg, Julia M., Cumba, Chad, Nichols, B. Nolan, Eshaghi, Arman, Ginsburg, Daniel, Schaefer, Alexander, Kastman, Erik, Acland, Benjamin, Liem, Franz, Kleesiek, Jens, Erickson, Drew, Giavasis, Steven, Correa, Carlos, Ghayoor, Ali, Contier, Oliver, Küttner, René, Millman, Jarrod, Lai, Jeff, Zhou, Dale, Blair, Ross, Haselgrove, Christian, Glatard, Tristan, Renfro, Mandy, Liu, Siqi, Stadler, Jörg, Kahn, Ari E., Pérez-García, Fernando, Triplett, William, Lampe, Leonie, Kong, Xiang-Zhen, Hallquist, Michael, Ma, Feilong, Leinweber, Katrin, Chetverikov, Andrey, Grignard, Martin, Chawla, Kshitij, Salvatore, John, Park, Anne, Poldrack, Russell, Craddock, R. Cameron, Hinds, Oliver, Cooper, Gavin, Weninger, Leon, Inati, Souheil, Perkins, L. Nathan, Lukas Snoek, Marina, Ana, Mattfeld, Aaron, Matsubara, K, Noel, Maxime, Cheung, Brian, Urchs, Sebastian, Durnez, Joke, Condamine, Eric, Geisler, Daniel, Floren, Andrew, Gerhard, Stephan, Sharp, Paul, Molina-Romero, Miguel, Haehn, Daniel, Weinstein, Alejandro, Tambini, Arielle, Broderick, William, Saase, Victor, Rothmei, Simon, Andberg, Sami Kristian, Harms, Robbert, Khanuja, Ranjeet, Schlamp, Kai, Arias, Jaime, Papadopoulos Orfanos, Dimitri, Tarbert, Claire, Nickson, Thomas, Brett, Matthew, Falkiewicz, Marcel, Podranski, Kornelius, Linkersdörfer, Janosch, Flandin, Guillaume, Ort, Eduard, Shachnev, Dmitry, McNamee, Daniel, Davison, Andrew, Varada, Jan, Schwabacher, Isaac, Pellman, John, Perez-Guevara, Martin, Pannetier, Nicolas, McDermottroe, Conor, Mihai, Paul Glad, Ghosh, Satrajit

مصطلحات موضوعية: neuroimaging, workflow, pipeline

الوصف: 1.1.9 (February 25, 2019) Full changelog FIX: Make positional arguments to LaplacianThickness require previous argument (https://github.com/nipy/nipype/pull/2848Test) FIX: Import math and csv modules for bids_gen_info (https://github.com/nipy/nipype/pull/2881Test) FIX: Ensure outputs can be listed in camino.ProcStreamlines by defining instance variable (https://github.com/nipy/nipype/pull/2739Test) ENH: Allow afni.MaskTool to take multiple input files (https://github.com/nipy/nipype/pull/2892Test) ENH: Add flags dictionary input to spm.Level1Design (https://github.com/nipy/nipype/pull/2861Test) ENH: Threshold stddev once only in TSNR (https://github.com/nipy/nipype/pull/2883Test) ENH: Add workbench.CiftiSmooth interface (https://github.com/nipy/nipype/pull/2871Test) DOC: Replace initialism typo in comment with intended phrase (https://github.com/nipy/nipype/pull/2875Test) DOC: Fix typos in ANTs Registration input documentation (https://github.com/nipy/nipype/pull/2869Test)

العلاقة: https://github.com/nipy/nipype/tree/1.1.9Test; https://zenodo.org/record/2577511Test; https://doi.org/10.5281/zenodo.2577511Test; oai:zenodo.org:2577511

الإتاحة: https://doi.org/10.5281/zenodo.2577511Test
https://doi.org/10.5281/zenodo.596855Test
https://zenodo.org/record/2577511Test

المؤلفون: Esteban, Oscar, Markiewicz, Christopher J., Burns, Christopher, Johnson, Hans, Ziegler, Erik, Manhães-Savio, Alexandre, Jarecka, Dorota, Ellis, David Gage, Yvernault, Benjamin, Hamalainen, Carlo, Notter, Michael Philipp, Salo, Taylor, Waskom, Michael, Goncalves, Mathias, Jordan, Kesshi, Wong, Jason, Dewey, Blake E, Madison, Cindee, Clark, Daniel, Loney, Fred, Clark, Dav, Nielson, Dylan M., Keshavan, Anisha, Joseph, Michael, Dayan, Michael, Modat, Marc, Bougacha, Salma, Gramfort, Alexandre, Visconti di Oleggio Castello, Matteo, Pinsard, Basile, Berleant, Shoshana, Christian, Horea, Rokem, Ariel, Halchenko, Yaroslav O., Kaczmarzyk, Jakub, Benderoff, Erin, Ćirić , Rastko, Varoquaux, Gael, Moloney, Brendan, DuPre, Elizabeth, Koudoro, Serge, Clark, Michael G., Wassermann, Demian, Cipollini, Ben, Guillon, Jérémy, Markello, Ross, Buchanan, Colin, Hanke, Michael, Tungaraza, Rosalia, Sikka, Sharad, Gillman, Ashley, Pauli, Wolfgang M., de Hollander, Gilles, Forbes, Jessica, Iqbal, Shariq, Mordom, David, Mancini, Matteo, Malone, Ian B., Dubois, Mathieu, Schwartz, Yannick, Frohlich, Caroline, Tabas, Alejandro, Welch, David, Richie-Halford, Adam, Tilley II, Steven, Watanabe, Aimi, Nichols, B. Nolan, Huntenburg, Julia M., Eshaghi, Arman, Schaefer, Alexander, Ginsburg, Daniel, Bottenhorn, Katherine, Cumba, Chad, Acland, Benjamin, Heinsfeld, Anibal Sólon, Kastman, Erik, Kent, James, Kleesiek, Jens, Erickson, Drew, Giavasis, Steven, Ghayoor, Ali, Liem, Franz, De La Vega, Alejandro, Küttner, René, Millman, Jarrod, Perez-Guevara, Martin Felipe, Lee, John A., Zhou, Dale, Haselgrove, Christian, Glen, Daniel, Renfro, Mandy, Correa, Carlos, Liu, Siqi, Lampe, Leonie, Kong, Xiang-Zhen, Hallquist, Michael, Kahn, Ari E., Glatard, Tristan, Triplett, William, Chawla, Kshitij, Salvatore, John, Pérez-García, Fernando, Ma, Feilong, Park, Anne, Craddock, R. Cameron, Hinds, Oliver, Poldrack, Russell, Perkins, L. Nathan, Kim, Sin, Chetverikov, Andrey, Inati, Souheil, Cieslak, Matthew, Grignard, Martin, Snoek, Lukas, Sisk, Lucinda M., Leinweber, Katrin, Junhao WEN, Matsubara, K, Urchs, Sebastian, Blair, Ross, Floren, Andrew, Mattfeld, Aaron, Gerhard, Stephan, Cooper, Gavin, Haehn, Daniel, Tambini, Arielle, Broderick, William, Andberg, Sami Kristian, Noel, Maxime, Durnez, Joke, Stadler, Jörg, Condamine, Eric, Papadopoulos Orfanos, Dimitri, Geisler, Daniel, Weinstein, Alejandro, Harms, Robbert, Khanuja, Ranjeet, Sharp, Paul, Stanley, Olivia, Lee, Nat, Crusoe, Michael R., Brett, Matthew, Falkiewicz, Marcel, Podranski, Kornelius, Linkersdörfer, Janosch, Flandin, Guillaume, Lerma-Usabiaga, Garikoitz, Shachnev, Dmitry, Tarbert, Claire, Cheung, Brian, Meyers, Benjamin, Van, Andrew, Davison, Andrew, Weninger, Leon, Molina-Romero, Miguel, Rothmei, Simon, Bilgel, Murat, Schlamp, Kai, Ort, Eduard, McNamee, Daniel, Lai, Jeff, Arias, Jaime, Bielievtsov, Dmytro, Steele, Christopher John, Huang, Lijie, Gonzalez, Ivan, Warner, Joshua, Margulies, Daniel S., Contier, Oliver, Marina, Ana, Saase, Victor, Nickson, Thomas, Varada, Jan, Schwabacher, Isaac, Pellman, John, Pannetier, Nicolas, McDermottroe, Conor, Mihai, Paul Glad, Gorgolewski, Krzysztof J., Ghosh, Satrajit

مصطلحات موضوعية: neuroimaging, workflow, pipeline

الوصف: 1.4.0 (December 20, 2019) Full changelog FIX: Mark strings containing regex escapes as raw (https://github.com/nipy/nipype/pull/3106Test) ENH: Pacify DeprecationWarnings caused by nibabel 3 pre-release (https://github.com/nipy/nipype/pull/3099Test) ENH: Allow Nipype configuration directory to be specified with NIPYPE_CONFIG_DIR environment variable (https://github.com/nipy/nipype/pull/3073Test) ENH: Add options and outputs to fsl.Eddy interface (https://github.com/nipy/nipype/pull/3034Test) ENH: Add skull_file output to fsl.BET interface (https://github.com/nipy/nipype/pull/3095Test) RF: Drop various remaining compatibilities for Python < 3.5 (https://github.com/nipy/nipype/pull/2831Test) DOC: Add Python 2 statement to README, reference maintenance branch in CONTRIBUTING (https://github.com/nipy/nipype/pull/3115Test) DOC: Miss underline before cmd in example code (https://github.com/nipy/nipype/pull/3107Test) STY: Black (https://github.com/nipy/nipype/pull/3096Test) MNT: Set junit_family to suppress pytest warning (https://github.com/nipy/nipype/pull/3111Test) MNT: Fix Dorota Jarecka ORCID (https://github.com/nipy/nipype/pull/3100Test) MNT: Drop Python 2 support (https://github.com/nipy/nipype/pull/2654Test)

العلاقة: https://github.com/nipy/nipype/tree/1.4.0Test; https://zenodo.org/record/3588470Test; https://doi.org/10.5281/zenodo.3588470Test; oai:zenodo.org:3588470

الإتاحة: https://doi.org/10.5281/zenodo.3588470Test
https://doi.org/10.5281/zenodo.596855Test
https://zenodo.org/record/3588470Test