نتائج البحث - "solvent accessible surface area"

1

Is amyloid fibrillation related to 3D domain swapping for the C-terminal domain of SARS-CoV main protease?

المؤلفون: Zhiliang Yuan, Zhi Qu, Bo Duan, Tianyi Wang, Jiajun Xu, Bin Xia

المصدر: International Journal of Biological Macromolecules

مصطلحات موضوعية: Models, Molecular, Protein Conformation, alpha-Helical, Amyloid, Protein Folding, NMR, Nuclear magnetic resonance, MD, Molecular dynamics, animal structures, macromolecular substances, Molecular Dynamics Simulation, RMSF, Root mean square fluctuation, Biochemistry, Article, Polymerization, Protein Domains, Structural Biology, Disulfides, Molecular Biology, Coronavirus 3C Proteases, SASA, Solvent accessible surface area, SEC, Size-exclusion chromatography, 3D domain swapping, Amyloid fibrillation, fungi, Temperature, General Medicine, Amyloidosis, Recombinant Proteins, Kinetics, CD, Circular dichroism, Mutation, Dimerization, Mpro-C, C-terminal domain of SARS-CoV main protease

الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2bea496e0a0f54c5901fdf5c865e5409Test
https://pubmed.ncbi.nlm.nih.gov/34953805Test

2

دورية أكاديمية

Extracting Structural Information from Charge-state Distributions of Intrinsically Disordered Proteins by Non-denaturing Electrospray-ionization Mass Spectrometry

المؤلفون: Testa, Lorenzo, Brocca, Stefania, Santambrogio, Carlo, D'Urzo, Annalisa, Habchi, Johnny, Longhi, Sonia, Uversky, Vladimir N, Grandori, Rita

المصدر: Molecular Medicine Faculty Publications

مصطلحات موضوعية: IDP Compaction, Sic1, Charge-state Distributions, Charge-to-mass Relation, Intrinsically Folded Structural Units, Native Mass Spectrometry, Protein Folding, Proteomics, Solvent-accessible Surface Area, α-Synuclein, Medicine and Health Sciences

وصف الملف: application/pdf

العلاقة: https://digitalcommons.usf.edu/mme_facpub/452Test; https://digitalcommons.usf.edu/context/mme_facpub/article/1454/viewcontent/Extracting_structural_information_from_charge_state_distributions_of_intrinsically_disordered_proteins_by_non_denaturing_electrospray_ionization_mass.pdfTest

الإتاحة: https://digitalcommons.usf.edu/mme_facpub/452Test
https://digitalcommons.usf.edu/context/mme_facpub/article/1454/viewcontent/Extracting_structural_information_from_charge_state_distributions_of_intrinsically_disordered_proteins_by_non_denaturing_electrospray_ionization_mass.pdfTest

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3

Analysis of Heterodimeric 'Mutual Synergistic Folding'-Complexes

المؤلفون: Csaba Magyar, Anikó Mentes, István Simon, Erzsébet Fichó

المصدر: International Journal of Molecular Sciences
International Journal of Molecular Sciences, Vol 20, Iss 20, p 5136 (2019)
Volume 20
Issue 20

مصطلحات موضوعية: Protein Folding, Globular protein, Protein Conformation, Intrinsically disordered proteins, Catalysis, Article, Inorganic Chemistry, lcsh:Chemistry, chemistry.chemical_compound, Structure-Activity Relationship, dehydrons, solvent accessible surface area, Physical and Theoretical Chemistry, Molecular Biology, Peptide sequence, lcsh:QH301-705.5, ion-pairs, Spectroscopy, chemistry.chemical_classification, mutual synergistic folding, Organic Chemistry, Intermolecular force, stabilization centers, General Medicine, Computer Science Applications, Amino acid, Folding (chemistry), Intrinsically Disordered Proteins, Crystallography, Monomer, inter-subunit interactions, Amino acid composition, chemistry, lcsh:Biology (General), lcsh:QD1-999, Protein Multimerization, Protein Binding

وصف الملف: application/pdf

الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a90bcbf89d87b4f4fdc51ec5ac97344eTest
http://europepmc.org/articles/PMC6829572Test

4

Effects of Curcumin and Ferulic Acid on the Folding of Amyloid-β Peptide

المؤلفون: Irini Doytchinova, Mariyana Atanasova, Ivan Dimitrov, Evdokiya Salamanova

المصدر: Molecules
Volume 26
Issue 9
Molecules, Vol 26, Iss 2815, p 2815 (2021)

مصطلحات موضوعية: Models, Molecular, folding, Protein Folding, Coumaric Acids, Static Electricity, Pharmaceutical Science, Peptide, Ligands, amyloid-β peptide, Article, Protein Structure, Secondary, Analytical Chemistry, Ferulic acid, chemistry.chemical_compound, QD241-441, Drug Discovery, curcumin, Physical and Theoretical Chemistry, Protein secondary structure, chemistry.chemical_classification, Amyloid beta-Peptides, Protein Stability, Chemistry, Hydrogen bond, Organic Chemistry, solvent-accessible surface area, secondary structure, hydrogen bonding, Folding (chemistry), molecular dynamics simulation, Monomer, Chemistry (miscellaneous), Intramolecular force, Solvents, Curcumin, Biophysics, Molecular Medicine, ferulic acid

وصف الملف: application/pdf

الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e75ec87cd76b46a8a4d020eb40778b76Test
https://doi.org/10.3390/molecules26092815Test

5

Conformational characterization and classification of intrinsically disordered proteins by native mass spectrometry and charge-state distribution analysis

المؤلفون: Antonino Natalello, Rita Grandori, Stefania Brocca, Carlo Santambrogio, Erika Ponzini

المساهمون: Santambrogio, C, Natalello, A, Brocca, S, Ponzini, E, Grandori, R

مصطلحات موضوعية: Proteomics, Protein Folding, Spectrometry, Mass, Electrospray Ionization, Protein Conformation, FIS/07 - FISICA APPLICATA (A BENI CULTURALI, AMBIENTALI, BIOLOGIA E MEDICINA), Intrinsically disordered proteins, Mass spectrometry, Biochemistry, 03 medical and health sciences, synthetic IDP, CHIM/01 - CHIMICA ANALITICA, Sasa, Structural proteomics, Animals, Humans, Conformational ensembles, Conformational isomerism, Molecular Biology, 030304 developmental biology, 0303 health sciences, biology, compaction index, Chemistry, Nano-electrospray-ionization, Solvent accessible surface area, 030302 biochemistry & molecular biology, Disulfide bond, Protein conformational ensemble, biology.organism_classification, BIO/10 - BIOCHIMICA, Intrinsically Disordered Proteins, Chemical physics, State distribution

الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f275732791102bd0ab3833ceda0842d1Test
http://hdl.handle.net/10281/218289Test

6

Physical Background of the Disordered Nature of 'Mutual Synergetic Folding' Proteins

المؤلفون: Anikó Mentes, Csaba Magyar, Erzsébet Fichó, Miklós Cserző, István Simon

المصدر: International Journal of Molecular Sciences, Vol 19, Iss 11, p 3340 (2018)
International Journal of Molecular Sciences
Volume 19
Issue 11

مصطلحات موضوعية: 0301 basic medicine, Models, Molecular, Protein Folding, Protein Conformation, dehydron, homodimer, Intrinsically disordered proteins, Catalysis, Article, Inorganic Chemistry, lcsh:Chemistry, 03 medical and health sciences, chemistry.chemical_compound, 0302 clinical medicine, Animals, Humans, Physical and Theoretical Chemistry, Databases, Protein, Molecular Biology, lcsh:QH301-705.5, Spectroscopy, hydrogen bond, Hydrogen bond, mutual synergistic folding, Organic Chemistry, Intermolecular force, Water, solvent-accessible surface area, stabilization center, General Medicine, Ion pairs, intrinsically disordered protein, Computer Science Applications, Folding (chemistry), Intrinsically Disordered Proteins, Protein Subunits, 030104 developmental biology, Monomer, Order (biology), inter-subunit interaction, chemistry, lcsh:Biology (General), lcsh:QD1-999, Biophysics, ion pair, Protein Multimerization, 030217 neurology & neurosurgery

وصف الملف: application/pdf

الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::554aaf47f748e96b86490728af187a21Test
https://www.mdpi.com/1422-0067/19/11/3340Test

7

Solvent Mimicry with Methylene Carbene to Probe Protein Topography

المؤلفون: José Luis Eugenio Monti, Mariana Rocío Mundo, Gabriela E. Gómez, José M. Delfino

المصدر: Analytical Chemistry. 87:10080-10087

مصطلحات موضوعية: Models, Molecular, Protein Folding, Conformational change, Calmodulin, Protein Conformation, Stereochemistry, Molecular Sequence Data, Methylation, Analytical Chemistry, Accessible surface area, Ciencias Biológicas, chemistry.chemical_compound, Protein structure, Tandem Mass Spectrometry, Footprinting technique, Animals, Organic chemistry, Amino Acid Sequence, Methylene, Binding Sites, biology, Chemistry, Solvent accessible surface area, Bees, Melitten, Biofísica, Diazomethane, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization, Reagent, Diazirine, Solvents, biology.protein, Cattle, Indicators and Reagents, Protein folding, Methane, CIENCIAS NATURALES Y EXACTAS

وصف الملف: application/pdf

الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::25da539d80cf594752ee6a921af02664Test
https://doi.org/10.1021/acs.analchem.5b02724Test

8

A hydrophobic spine stabilizes a surface-exposed α-helix according to analysis of the solvent-accessible surface area

المؤلفون: Shinn-Ying Ho, Hui Ling Huang, Yi Fan Liou

المصدر: BMC Bioinformatics

مصطلحات موضوعية: Models, Molecular, Protein Conformation, alpha-Helical, 0301 basic medicine, Protein Folding, Physicochemical properties, Stereochemistry, Bioinformatics, Biochemistry, Protein Structure, Secondary, Accessible surface area, 03 medical and health sciences, Molecular dynamics, Knowledge discovery, Protein structure, Structural Biology, Molecular dynamics simulation, Humans, Computer Simulation, Amino Acids, Databases, Protein, Molecular Biology, SPINE (molecular biology), Solvent-accessible surface area, 030102 biochemistry & molecular biology, Chemistry, Research, Applied Mathematics, Proteins, computer.file_format, Hydrophobic spine, Protein Data Bank, Computer Science Applications, Folding (chemistry), Support vector regression, 030104 developmental biology, Data Interpretation, Statistical, Helix, Solvents, Protein folding, Hydrophobic and Hydrophilic Interactions, computer, Algorithms

الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b59c23076b2c1f3b9d023f345b59d66dTest
https://doi.org/10.1186/s12859-016-1368-zTest

9

Conformational effects in protein electrospray-ionization mass spectrometry

المؤلفون: Jinyu, Li, Carlo, Santambrogio, Stefania, Brocca, Giulia, Rossetti, Paolo, Carloni, Rita, Grandori

المساهمون: Li, J, Santambrogio, C, Brocca, S, Rossetti, G, Carloni, P, Grandori, R

مصطلحات موضوعية: Protein Folding, Spectrometry, Mass, Electrospray Ionization, Biochemistry, Genetics and Molecular Biology (all), Protein Conformation, Proton transfer reaction, Solvent accessible surface area, Proteins, FIS/07 - FISICA APPLICATA (A BENI CULTURALI, AMBIENTALI, BIOLOGIA E MEDICINA), Molecular-dynamics simulation, Condensed Matter Physic, BIO/10 - BIOCHIMICA, Analytical Chemistry, CHIM/01 - CHIMICA ANALITICA, Charge-state distribution, Gas-phase basicity, Spectroscopy

الوصول الحر: https://explore.openaire.eu/search/publication?articleId=pmid_dedup__::3df84c63225c91acda80e1ddb2cae746Test
http://hdl.handle.net/10281/95750Test

10

Self-organized critical model for protein folding

المؤلفون: Marcelo A. Moret

المصدر: Physica A: Statistical Mechanics and its Applications. 390:3055-3059

مصطلحات موضوعية: Statistics and Probability, Physics, Self-organized criticality, Mass-size exponent, Solvent accessible surface area, computer.file_format, Tsallis statistics, Condensed Matter Physics, Protein Data Bank, Power law, Fractal dimension, Scaling, Folding (chemistry), Hydrophobic effect, Protein structure, Fractal, Protein folding, Statistical physics, computer

الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1f15112d3bf79c8d16e42503f8fe7a86Test
https://doi.org/10.1016/j.physa.2011.04.008Test

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