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المؤلفون: Flávia Santiago de Oliveira, Andrea Siqueira Haibara, Vinícius da Silva Coutinho Parreira, Adriana Abalen Martins Dias, Ana G.C. Neves-Ferreira, Hellen Geremias dos Santos, Flávia Cristina de Paula Freitas, Letícia Graziela Costa Santos, Esdras Matheus Gomes da Silva, Paulo C. Carvalho, Raphael Tavares, Patricia Savio de Araujo-Souza, Fabio Passetti
المصدر: Cells, Vol 10, Iss 1583, p 1583 (2021)
Cells
Cells; Volume 10; Issue 7; Pages: 1583مصطلحات موضوعية: Male, Gene isoform, QH301-705.5, Computational biology, Biology, mRNA splicing, Alzheimer’s disease, neurodegeneration, proteogenomics, Article, Alzheimer Disease, medicine, Animals, Humans, STXBP1, Amino Acid Sequence, RNA, Messenger, RNA-Seq, Biology (General), Databases, Protein, Shotgun proteomics, Gene, Alternative splicing, Neurodegeneration, Brain, Exons, General Medicine, Proteogenomics, medicine.disease, Mice, Inbred C57BL, Alternative Splicing, Disease Models, Animal, RNA splicing, Peptides, Transcriptome
وصف الملف: application/pdf
الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::81a4ec71db45c8bcddd24053615f33c9Test
https://www.mdpi.com/2073-4409/10/7/1583Test -
72Chimera Spectrum Diagnostics for Peptides Using Two-Dimensional Partial Covariance Mass Spectrometry
المؤلفون: Marina Edelson-Averbukh, Jonathan P. Marangos, Taran Driver, Vitali Averbukh, Leszek J. Frasinski, Nikhil Bachhawat
المساهمون: Engineering & Physical Science Research Council (EPSRC), Engineering & Physical Science Research Council (E, EPSRC/DSTL
المصدر: Molecules
Volume 26
Issue 12
Molecules, Vol 26, Iss 3728, p 3728 (2021)مصطلحات موضوعية: Proteomics, Analytical chemistry, Pharmaceutical Science, Peptide, Tandem mass spectrometry, Mass spectrometry, 0305 Organic Chemistry, Spectral line, Article, Analytical Chemistry, Ion, 03 medical and health sciences, QD241-441, Drug Discovery, tandem mass spectrometry, 0307 Theoretical and Computational Chemistry, Physical and Theoretical Chemistry, Databases, Protein, two-dimensional partial covariance mass spectrometry, Peptide sequence, 030304 developmental biology, chemistry.chemical_classification, Ions, 0303 health sciences, 0304 Medicinal and Biomolecular Chemistry, Chemistry, 030302 biochemistry & molecular biology, Organic Chemistry, Covariance, Chemistry (miscellaneous), Molecular Medicine, Isobaric process, chimera spectra, Peptides
وصف الملف: application/pdf
الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::237bb807d4ea8dbf9bae57f2eff7534cTest
http://europepmc.org/articles/PMC8234510Test -
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المؤلفون: Vigneshwaran, Kannan, Ramesh, Anishetty, S R, Hassan
المصدر: Computational Biology and Chemistry. 98:107684
مصطلحات موضوعية: Computational Mathematics, Protein Conformation, Structural Biology, Organic Chemistry, Databases, Protein, Peptides, Oligopeptides, Biochemistry, Protein Structure, Secondary
الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::784364ed6844dcb3bf48971b75d7fbd2Test
https://doi.org/10.1016/j.compbiolchem.2022.107684Test -
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المؤلفون: Guillaume Fertin, Géraldine Jean, Dominique Tessier, Albane Lysiak
المساهمون: Unité de recherche sur les Biopolymères, Interactions Assemblages (BIA), Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Laboratoire des Sciences du Numérique de Nantes (LS2N), IMT Atlantique Bretagne-Pays de la Loire (IMT Atlantique), Institut Mines-Télécom [Paris] (IMT)-Institut Mines-Télécom [Paris] (IMT)-Université de Nantes - UFR des Sciences et des Techniques (UN UFR ST), Université de Nantes (UN)-Université de Nantes (UN)-École Centrale de Nantes (ECN)-Centre National de la Recherche Scientifique (CNRS), INRA Plateforme BIBS, Unité de Recherche Biopolymères, Interactions, Assemblages, ANR-18-CE45-0004,DeepProt,Vers une meilleure connaissance des protéomes(2018), Combinatoire et Bioinformatique (COMBI), Université de Nantes (UN)-Université de Nantes (UN)-École Centrale de Nantes (ECN)-Centre National de la Recherche Scientifique (CNRS)-IMT Atlantique Bretagne-Pays de la Loire (IMT Atlantique)
المصدر: BMC Bioinformatics
BMC Bioinformatics, BioMed Central, 2021, 22 (2 (Special Issue)), pp.65. ⟨10.1186/s12859-021-03963-6⟩
BMC Bioinformatics, Vol 22, Iss S2, Pp 1-17 (2021)
BMC Bioinformatics, BioMed Central, 2021, 22 (S2), pp.104-120. ⟨10.1186/s12859-021-03963-6⟩مصطلحات موضوعية: Proteomics, [INFO.INFO-CC]Computer Science [cs]/Computational Complexity [cs.CC], False discovery rate, Similarity (geometry), QH301-705.5, Computer science, [INFO.INFO-DS]Computer Science [cs]/Data Structures and Algorithms [cs.DS], Computer applications to medicine. Medical informatics, R858-859.7, Context (language use), 01 natural sciences, Biochemistry, 03 medical and health sciences, Tandem Mass Spectrometry, Structural Biology, Relevance (information retrieval), [SDV.BBM]Life Sciences [q-bio]/Biochemistry, Molecular Biology, Biology (General), [INFO.INFO-BT]Computer Science [cs]/Biotechnology, Databases, Protein, Molecular Biology, 030304 developmental biology, 0303 health sciences, Sequence, Mass spectrometry, business.industry, Peptide identification, Research, Blind search, Applied Mathematics, 010401 analytical chemistry, Pattern recognition, 0104 chemical sciences, Computer Science Applications, Open Modification Search, Mass spectrum, Artificial intelligence, [INFO.INFO-BI]Computer Science [cs]/Bioinformatics [q-bio.QM], Peptides, business, Algorithms, Software
الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2b100aea7596d2b472676874bd7a9971Test
https://hal.inrae.fr/hal-03318623Test -
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المؤلفون: Xiucai Ye, Lesong Wei, Leyi Wei, Tetsuya Sakurai, Yuyang Xue
المصدر: Briefings in Bioinformatics. 22
مصطلحات موضوعية: Graph neural networks, Computer science, Feature extraction, Datasets as Topic, Machine learning, computer.software_genre, Evolution, Molecular, Machine Learning, 03 medical and health sciences, 0302 clinical medicine, Software, Discriminative model, Humans, Evolutionary information, Databases, Protein, Molecular Biology, 030304 developmental biology, 0303 health sciences, Artificial neural network, business.industry, Mechanism (biology), Computational Biology, Neural Networks, Computer, Artificial intelligence, Peptides, business, computer, 030217 neurology & neurosurgery, Information Systems
الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::678e9c4d62010bbd430548fcfd6e85b5Test
https://doi.org/10.1093/bib/bbab041Test -
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المؤلفون: Mathias Hauri-Hohl, Konstantina Kapolou, Philipp Wagner, Holger Moch, Lena Mühlenbruch, Linus Backert, Ana Marcu, Leon Kuchenbecker, Maren Lübke, Florian Erhard, Marian Christoph Neidert, Leon Bichmann, András Szolek, Luca Regli, Julia Velz, T Engler, Michael Weller, Jian Wang, Andreas Schlosser, Hans-Georg Rammensee, Juliane S. Walz, Markus W. Löffler, Sabine Matovina, Lena Katharina Freudenmann, Roland Martin, Manuela Silginer, Daniel J. Kowalewski, Oliver Kohlbacher, Stefan Stevanovic
المساهمون: University of Zurich, Marcu, Ana
المصدر: Journal for Immunotherapy of Cancer
Journal for ImmunoTherapy of Cancer, Vol 9, Iss 4 (2021)
Journal for ImmunoTherapy of Cancer, 9 (4)مصطلحات موضوعية: 0301 basic medicine, Male, Proteomics, Cancer Research, Proteome, medicine.medical_treatment, T-Lymphocytes, Ligands, Immunotherapy, Adoptive, 0302 clinical medicine, Cancer immunotherapy, antigens, HLA Antigens, Tandem Mass Spectrometry, Neoplasms, Immunology and Allergy, tumor-associated, 1306 Cancer Research, Databases, Protein, RC254-282, Aged, 80 and over, Receptors, Chimeric Antigen, Neoplasms. Tumors. Oncology. Including cancer and carcinogens, adaptive immunity, Middle Aged, medicine.anatomical_structure, 3004 Pharmacology, Oncology, 030220 oncology & carcinogenesis, translational medical research, 2723 Immunology and Allergy, Molecular Medicine, 2730 Oncology, Female, immunotherapy, T cell, Immunology, Antigen presentation, 610 Medicine & health, Human leukocyte antigen, Biology, 03 medical and health sciences, 10180 Clinic for Neurosurgery, Immune system, Antigen, Antigens, Neoplasm, 10049 Institute of Pathology and Molecular Pathology, medicine, Humans, 10220 Clinic for Surgery, Aged, Pharmacology, 2403 Immunology, Infant, Newborn, Infant, Basic Tumor Immunology, Immunotherapy, 10040 Clinic for Neurology, Transplantation, antigen presentation, 030104 developmental biology, 10036 Medical Clinic, carbohydrate, 1313 Molecular Medicine, Cancer research, Peptides, Chromatography, Liquid
وصف الملف: Marcu_JTC_2021.pdf - application/pdf; application/application/pdf
الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::9fe60acde39b8836271de108aaf846eeTest
http://europepmc.org/articles/PMC8054196Test -
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المؤلفون: Gert-Jan, Bekker, Narutoshi, Kamiya
المصدر: Methods in molecular biology (Clifton, N.J.). 2266
مصطلحات موضوعية: Models, Molecular, Principal Component Analysis, Cyclin-Dependent Kinase 2, Molecular Conformation, Temperature, Proteins, Molecular Dynamics Simulation, Antibodies, Monoclonal, Humanized, Ligands, Antibodies, Molecular Docking Simulation, Aspartic Acid Endopeptidases, Amyloid Precursor Protein Secretases, Databases, Protein, Peptides, Protein Binding
الوصول الحر: https://explore.openaire.eu/search/publication?articleId=pmid________::ff73830f3de1c83a250f763e43b4f127Test
https://pubmed.ncbi.nlm.nih.gov/33759128Test -
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المصدر: The Journal of Biological Chemistry
مصطلحات موضوعية: Models, Molecular, heterotrimeric G protein, Phospholipase C beta, Rosetta molecular modeling program, Protein Engineering, peptide interaction, GAP, GTPase-activating protein, SRE, serum response element, FACS, fluorescent-activated cell sorting, Humans, cancer, PLC-β, phospholipase C-β, Cloning, Molecular, Gαq, phospholipase C, Databases, Protein, protein design, CD, circular dichroism, GPCR, G-protein-coupled receptor, molecular modeling, Editors' Pick, HTH, helix-turn-helix, Recombinant Proteins, HEK293 Cells, Drug Design, GTP-Binding Protein alpha Subunits, Gq-G11, Peptides, Protein Binding, Research Article
الوصول الحر: https://explore.openaire.eu/search/publication?articleId=pmid________::b312183ea3757d6df7e63b851043a207Test
https://pubmed.ncbi.nlm.nih.gov/34715131Test -
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المؤلفون: Zhilong Wang, Yanqiang Han, Jinjin Li, Zhiyun Wei, Jinyun Liu
المصدر: Briefings in bioinformatics. 22(6)
مصطلحات موضوعية: Computational complexity theory, Protein Conformation, Molecular Dynamics Simulation, 010402 general chemistry, Machine learning, computer.software_genre, 01 natural sciences, Machine Learning, Molecular dynamics, Acceleration, 0103 physical sciences, Databases, Protein, Molecular Biology, Protein size, Physics, 010304 chemical physics, Artificial neural network, business.industry, Computational Biology, Proteins, Reproducibility of Results, 0104 chemical sciences, Potential energy surface, Quantum Theory, Artificial intelligence, Neural Networks, Computer, business, Peptides, computer, Energy (signal processing), Algorithms, Information Systems
الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c4742b76fe2c6459cf1fc533df59104cTest
https://pubmed.ncbi.nlm.nih.gov/34017993Test -
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المصدر: Molecular & Cellular Proteomics : MCP
مصطلحات موضوعية: Nonsynonymous substitution, Proteome, FDR, false discovery rate, THP-1 Cells, RNA-Seq, Computational biology, Human leukocyte antigen, Biology, Major histocompatibility complex, Biochemistry, Genome, Analytical Chemistry, Workflow, Transcriptome, immunology, Epitopes, Special Issue: Immunopeptidomics, HLA Antigens, PTM, post-translationally modified, unconventional antigen, Human proteome project, Humans, MHC, major histocompatibility complex, ns-SNV, nonsynonymous single nucleotide variant, Databases, Protein, Molecular Biology, AML, acute myeloid leukemia, FA, formic acid, HLA, human leukocyte antigen, Technological Innovation and Resources, immunopeptidomics, iRT, indexed retention time, Genomics, GATK, Genome Analysis Toolkit, PSM, peptide-spectrum match, HLA, antigen presentation, biology.protein, DB, database, UniProt, Peptides, Software
الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::cc82b71ca8c337c2db4113bac527d64cTest
https://pubmed.ncbi.nlm.nih.gov/34509645Test
