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1دورية أكاديميةCommunity-Wide Assessment of Protein-Interface Modeling Suggests Improvements to Design Methodology.
المؤلفون: Fleishman, Sarel J, Whitehead, Timothy A, Strauch, Eva-Maria, Corn, Jacob E, Qin, Sanbo, Zhou, Huan-Xiang, Mitchell, Julie C, Demerdash, Omar N A, Takeda-Shitaka, Mayuko, Terashi, Genki, Moal, Iain H, Li, Xiaofan, Bates, Paul A, Zacharias, Martin, Park, Hahnbeom, Ko, Jun-Su, Lee, Hasup, Seok, Chaok, Bourquard, Thomas, Bernauer, Julie, Poupon, Anne, Azé, Jérôme, Soner, Seren, Ovali, Sefik Kerem, Ozbek, Pemra, Tal, Nir Ben, Haliloglu, Türkan, Hwang, Howook, Vreven, Thom, Pierce, Brian G, Weng, Zhiping, Pérez-Cano, Laura, Pons, Carles, Fernández-Recio, Juan, Jiang, Fan, Yang, Feng, Gong, Xinqi, Cao, Libin, Xu, Xianjin, Liu, Bin, Wang, Panwen, Li, Chunhua, Wang, Cunxin, Robert, Charles H, Guharoy, Mainak, Liu, Shiyong, Huang, Yangyu, Li, Lin, Guo, Dachuan, Chen, Ying, Xiao, Yi, London, Nir, Itzhaki, Zohar, Schueler-Furman, Ora, Inbar, Yuval, Patapov, Vladimir, Cohen, Mati, Schreiber, Gideon, Tsuchiya, Yuko, Kanamori, Eiji, Standley, Daron M, Nakamura, Haruki, Kinoshita, Kengo, Driggers, Camden M, Hall, Robert G, Morgan, Jessica L, Hsu, Victor L, Zhan, Jian, Yang, Yuedong, Zhou, Yaoqi, Kastritis, Panagiotis L, Bonvin, Alexandre M J J, Zhang, Weiyi, Camacho, Carlos J, Kilambi, Krishna P, Sircar, Aroop, Gray, Jeffrey J, Ohue, Masahito, Uchikoga, Nobuyuki, Matsuzaki, Yuri, Ishida, Takashi, Akiyama, Yutaka, Khashan, Raed, Bush, Stephen, Fouches, Denis, Tropsha, Alexander, Esquivel-Rodríguez, Juan, Kihara, Daisuke, Stranges, P Benjamin, Jacak, Ron, Kuhlman, Brian, Huang, Sheng-You, Zou, Xiaoqin, Wodak, Shoshana J, Janin, Joel, Baker, David
المساهمون: University of Washington Seattle, Institute of Molecular Biophysics Tallahassee, Florida State University Tallahassee (FSU), University of Wisconsin Whitewater, Kitasato University, Biomolecular Modelling laboratory London, Cancer Research UK London Research Institute, Technische Universität Munchen - Technical University Munich - Université Technique de Munich (TUM), Seoul National University Seoul (SNU), Knowledge representation, reasonning (ORPAILLEUR), INRIA Lorraine, Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche en Informatique et en Automatique (Inria)-Laboratoire Lorrain de Recherche en Informatique et ses Applications (LORIA), Institut National de Recherche en Informatique et en Automatique (Inria)-Université Henri Poincaré - Nancy 1 (UHP)-Université Nancy 2-Institut National Polytechnique de Lorraine (INPL)-Centre National de la Recherche Scientifique (CNRS)-Université Henri Poincaré - Nancy 1 (UHP)-Université Nancy 2-Institut National Polytechnique de Lorraine (INPL)-Centre National de la Recherche Scientifique (CNRS), Algorithms and Models for Integrative Biology (AMIB ), Laboratoire d'informatique de l'École polytechnique Palaiseau (LIX), École polytechnique (X)-Centre National de la Recherche Scientifique (CNRS)-École polytechnique (X)-Centre National de la Recherche Scientifique (CNRS)-Laboratoire de Recherche en Informatique (LRI), Université Paris-Sud - Paris 11 (UP11)-CentraleSupélec-Centre National de la Recherche Scientifique (CNRS)-Université Paris-Sud - Paris 11 (UP11)-CentraleSupélec-Centre National de la Recherche Scientifique (CNRS)-Inria Saclay - Ile de France, Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche en Informatique et en Automatique (Inria), Physiologie de la reproduction et des comportements Nouzilly (PRC), Institut National de la Recherche Agronomique (INRA)-Institut Français du Cheval et de l'Equitation Saumur (IFCE)-Université de Tours (UT)-Centre National de la Recherche Scientifique (CNRS), Department of Chemical Engineering Bogazici (ChE), Boǧaziçi üniversitesi = Boğaziçi University Istanbul, Tel Aviv University (TAU), University of Massachusetts Medical School Worcester (UMASS), University of Massachusetts System (UMASS), Barcelona Supercomputing Center - Centro Nacional de Supercomputacion (BSC-CNS), Chinese Academy of Sciences Beijing (CAS), Beijing University of Technology, Laboratoire de biochimie théorique Paris (LBT (UPR_9080)), Institut de biologie physico-chimique (IBPC (FR_550)), Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université Paris Diderot - Paris 7 (UPD7)-Institut de Chimie - CNRS Chimie (INC-CNRS)-Centre National de la Recherche Scientifique (CNRS), Huazhong University of Science and Technology Wuhan (HUST), Hadassah Hebrew University Medical Center Jerusalem, Weizmann Institute of Science Rehovot, Israël, Institute for Protein Research Osaka, Osaka University Osaka, Japan Biological Informatics Consortium Tokyo, WPI Immunology Frontier Research Center (IFREC), Graduate School of Information Sciences Sendai, Tohoku University Sendai, Oregon State University (OSU), Indiana University - Purdue University Indianapolis (IUPUI), Indiana University System, Bijvoet Center for Biomolecular Research Utrecht, Universiteit Utrecht / Utrecht University Utrecht, University of Pittsburgh (PITT), Pennsylvania Commonwealth System of Higher Education (PCSHE), Johns Hopkins University (JHU), Tokyo Institute of Technology Tokyo (TITECH), University of North Carolina Chapel Hill (UNC), University of North Carolina System (UNC), Purdue University West Lafayette, Dalton Cardiovascular Research Center Columbia, University of Missouri Columbia (Mizzou), University of Missouri System-University of Missouri System, The Hospital for sick children Toronto (SickKids), Institut de biochimie et biophysique moléculaire et cellulaire (IBBMC), Université Paris-Sud - Paris 11 (UP11)-Centre National de la Recherche Scientifique (CNRS), The authors thank Sameer Velankar and Marc Lensink for their help in coordinating this experiment and Raik Grunberg for many helpful suggestions on a draft. S.J.F. was supported by a long-term fellowship from the Human Frontier Science Program. S.J.W. is Canada Research Chair Tier 1, funded by the Canadian Institutes of Health Research. Research in the Baker laboratory was supported by the Howard Hughes Medical Institute, the Defense Advanced Research Projects Agency, the National Institutes of Health Yeast Resource Center, and the Defense Threat Reduction Agency.
المصدر: ISSN: 0022-2836.
مصطلحات موضوعية: computational protein design, negative design, conformational plasticity, biochemistry and molecular biology, protein protein interactions, [SDV.BBM.BS]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Structural Biology [q-bio.BM]
العلاقة: info:eu-repo/semantics/altIdentifier/pmid/22001016; inria-00637848; https://inria.hal.science/inria-00637848Test; PRODINRA: 50264; PUBMED: 22001016; PUBMEDCENTRAL: PMC3839241; WOS: 000298127500010
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2دورية أكاديميةCommunity-Wide Assessment of Protein-Interface Modeling Suggests Improvements to Design Methodology.
المؤلفون: Fleishman, Sarel J, Whitehead, Timothy A, Strauch, Eva-Maria, Corn, Jacob E, Qin, Sanbo, Zhou, Huan-Xiang, Mitchell, Julie C, Demerdash, Omar N A, Takeda-Shitaka, Mayuko, Terashi, Genki, Moal, Iain H, Li, Xiaofan, Bates, Paul A, Zacharias, Martin, Park, Hahnbeom, Ko, Jun-Su, Lee, Hasup, Seok, Chaok, Bourquard, Thomas, Bernauer, Julie, Poupon, Anne, Azé, Jérôme, Soner, Seren, Ovali, Sefik Kerem, Ozbek, Pemra, Tal, Nir Ben, Haliloglu, Türkan, Hwang, Howook, Vreven, Thom, Pierce, Brian G, Weng, Zhiping, Pérez-Cano, Laura, Pons, Carles, Fernández-Recio, Juan, Jiang, Fan, Yang, Feng, Gong, Xinqi, Cao, Libin, Xu, Xianjin, Liu, Bin, Wang, Panwen, Li, Chunhua, Wang, Cunxin, Robert, Charles H, Guharoy, Mainak, Liu, Shiyong, Huang, Yangyu, Li, Lin, Guo, Dachuan, Chen, Ying, Xiao, Yi, London, Nir, Itzhaki, Zohar, Schueler-Furman, Ora, Inbar, Yuval, Patapov, Vladimir, Cohen, Mati, Schreiber, Gideon, Tsuchiya, Yuko, Kanamori, Eiji, Standley, Daron M, Nakamura, Haruki, Kinoshita, Kengo, Driggers, Camden M, Hall, Robert G, Morgan, Jessica L, Hsu, Victor L, Zhan, Jian, Yang, Yuedong, Zhou, Yaoqi, Kastritis, Panagiotis L, Bonvin, Alexandre M J J, Zhang, Weiyi, Camacho, Carlos J, Kilambi, Krishna P, Sircar, Aroop, Gray, Jeffrey J, Ohue, Masahito, Uchikoga, Nobuyuki, Matsuzaki, Yuri, Ishida, Takashi, Akiyama, Yutaka, Khashan, Raed, Bush, Stephen, Fouches, Denis, Tropsha, Alexander, Esquivel-Rodríguez, Juan, Kihara, Daisuke, Stranges, P Benjamin, Jacak, Ron, Kuhlman, Brian, Huang, Sheng-You, Zou, Xiaoqin, Wodak, Shoshana J, Janin, Joel, Baker, David
المساهمون: University of Washington Seattle, Institute of Molecular Biophysics Tallahassee, Florida State University Tallahassee (FSU), University of Wisconsin Whitewater, Kitasato University, Biomolecular Modelling laboratory London, Cancer Research UK London Research Institute, Technische Universität Munchen - Technical University Munich - Université Technique de Munich (TUM), Seoul National University Seoul (SNU), Knowledge representation, reasonning (ORPAILLEUR), INRIA Lorraine, Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche en Informatique et en Automatique (Inria)-Laboratoire Lorrain de Recherche en Informatique et ses Applications (LORIA), Institut National de Recherche en Informatique et en Automatique (Inria)-Université Henri Poincaré - Nancy 1 (UHP)-Université Nancy 2-Institut National Polytechnique de Lorraine (INPL)-Centre National de la Recherche Scientifique (CNRS)-Université Henri Poincaré - Nancy 1 (UHP)-Université Nancy 2-Institut National Polytechnique de Lorraine (INPL)-Centre National de la Recherche Scientifique (CNRS), Algorithms and Models for Integrative Biology (AMIB ), Laboratoire d'informatique de l'École polytechnique Palaiseau (LIX), École polytechnique (X)-Centre National de la Recherche Scientifique (CNRS)-École polytechnique (X)-Centre National de la Recherche Scientifique (CNRS)-Laboratoire de Recherche en Informatique (LRI), Université Paris-Sud - Paris 11 (UP11)-CentraleSupélec-Centre National de la Recherche Scientifique (CNRS)-Université Paris-Sud - Paris 11 (UP11)-CentraleSupélec-Centre National de la Recherche Scientifique (CNRS)-Inria Saclay - Ile de France, Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche en Informatique et en Automatique (Inria), Physiologie de la reproduction et des comportements Nouzilly (PRC), Institut National de la Recherche Agronomique (INRA)-Institut Français du Cheval et de l'Equitation Saumur (IFCE)-Université de Tours (UT)-Centre National de la Recherche Scientifique (CNRS), Department of Chemical Engineering Bogazici (ChE), Boǧaziçi üniversitesi = Boğaziçi University Istanbul, Tel Aviv University (TAU), University of Massachusetts Medical School Worcester (UMASS), University of Massachusetts System (UMASS), Barcelona Supercomputing Center - Centro Nacional de Supercomputacion (BSC-CNS), Chinese Academy of Sciences Beijing (CAS), Beijing University of Technology, Laboratoire de biochimie théorique Paris (LBT (UPR_9080)), Institut de biologie physico-chimique (IBPC (FR_550)), Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université Paris Diderot - Paris 7 (UPD7)-Institut de Chimie - CNRS Chimie (INC-CNRS)-Centre National de la Recherche Scientifique (CNRS), Huazhong University of Science and Technology Wuhan (HUST), Hadassah Hebrew University Medical Center Jerusalem, Weizmann Institute of Science Rehovot, Israël, Institute for Protein Research Osaka, Osaka University Osaka, Japan Biological Informatics Consortium Tokyo, WPI Immunology Frontier Research Center (IFREC), Graduate School of Information Sciences Sendai, Tohoku University Sendai, Oregon State University (OSU), Indiana University - Purdue University Indianapolis (IUPUI), Indiana University System, Bijvoet Center for Biomolecular Research Utrecht, Universiteit Utrecht / Utrecht University Utrecht, University of Pittsburgh (PITT), Pennsylvania Commonwealth System of Higher Education (PCSHE), Johns Hopkins University (JHU), Tokyo Institute of Technology Tokyo (TITECH), University of North Carolina Chapel Hill (UNC), University of North Carolina System (UNC), Purdue University West Lafayette, Dalton Cardiovascular Research Center Columbia, University of Missouri Columbia (Mizzou), University of Missouri System-University of Missouri System, The Hospital for sick children Toronto (SickKids), Institut de biochimie et biophysique moléculaire et cellulaire (IBBMC), Université Paris-Sud - Paris 11 (UP11)-Centre National de la Recherche Scientifique (CNRS), The authors thank Sameer Velankar and Marc Lensink for their help in coordinating this experiment and Raik Grunberg for many helpful suggestions on a draft. S.J.F. was supported by a long-term fellowship from the Human Frontier Science Program. S.J.W. is Canada Research Chair Tier 1, funded by the Canadian Institutes of Health Research. Research in the Baker laboratory was supported by the Howard Hughes Medical Institute, the Defense Advanced Research Projects Agency, the National Institutes of Health Yeast Resource Center, and the Defense Threat Reduction Agency.
المصدر: ISSN: 0022-2836.
مصطلحات موضوعية: computational protein design, negative design, conformational plasticity, biochemistry and molecular biology, protein protein interactions, [SDV.BBM.BS]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Structural Biology [q-bio.BM]
العلاقة: info:eu-repo/semantics/altIdentifier/pmid/22001016; inria-00637848; https://inria.hal.science/inria-00637848Test; PRODINRA: 50264; PUBMED: 22001016; PUBMEDCENTRAL: PMC3839241; WOS: 000298127500010
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3دورية أكاديميةCommunity-Wide Assessment of Protein-Interface Modeling Suggests Improvements to Design Methodology.
المؤلفون: Fleishman, Sarel J, Whitehead, Timothy A, Strauch, Eva-Maria, Corn, Jacob E, Qin, Sanbo, Zhou, Huan-Xiang, Mitchell, Julie C, Demerdash, Omar N A, Takeda-Shitaka, Mayuko, Terashi, Genki, Moal, Iain H, Li, Xiaofan, Bates, Paul A, Zacharias, Martin, Park, Hahnbeom, Ko, Jun-Su, Lee, Hasup, Seok, Chaok, Bourquard, Thomas, Bernauer, Julie, Poupon, Anne, Azé, Jérôme, Soner, Seren, Ovali, Sefik Kerem, Ozbek, Pemra, Tal, Nir Ben, Haliloglu, Türkan, Hwang, Howook, Vreven, Thom, Pierce, Brian G, Weng, Zhiping, Pérez-Cano, Laura, Pons, Carles, Fernández-Recio, Juan, Jiang, Fan, Yang, Feng, Gong, Xinqi, Cao, Libin, Xu, Xianjin, Liu, Bin, Wang, Panwen, Li, Chunhua, Wang, Cunxin, Robert, Charles H, Guharoy, Mainak, Liu, Shiyong, Huang, Yangyu, Li, Lin, Guo, Dachuan, Chen, Ying, Xiao, Yi, London, Nir, Itzhaki, Zohar, Schueler-Furman, Ora, Inbar, Yuval, Patapov, Vladimir, Cohen, Mati, Schreiber, Gideon, Tsuchiya, Yuko, Kanamori, Eiji, Standley, Daron M, Nakamura, Haruki, Kinoshita, Kengo, Driggers, Camden M, Hall, Robert G, Morgan, Jessica L, Hsu, Victor L, Zhan, Jian, Yang, Yuedong, Zhou, Yaoqi, Kastritis, Panagiotis L, Bonvin, Alexandre M J J, Zhang, Weiyi, Camacho, Carlos J, Kilambi, Krishna P, Sircar, Aroop, Gray, Jeffrey J, Ohue, Masahito, Uchikoga, Nobuyuki, Matsuzaki, Yuri, Ishida, Takashi, Akiyama, Yutaka, Khashan, Raed, Bush, Stephen, Fouches, Denis, Tropsha, Alexander, Esquivel-Rodríguez, Juan, Kihara, Daisuke, Stranges, P Benjamin, Jacak, Ron, Kuhlman, Brian, Huang, Sheng-You, Zou, Xiaoqin, Wodak, Shoshana J, Janin, Joel, Baker, David
المساهمون: University of Washington Seattle, Institute of Molecular Biophysics Tallahassee, Florida State University Tallahassee (FSU), University of Wisconsin Whitewater, Kitasato University, Biomolecular Modelling laboratory London, Cancer Research UK London Research Institute, Technische Universität Munchen - Technical University Munich - Université Technique de Munich (TUM), Seoul National University Seoul (SNU), Knowledge representation, reasonning (ORPAILLEUR), INRIA Lorraine, Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche en Informatique et en Automatique (Inria)-Laboratoire Lorrain de Recherche en Informatique et ses Applications (LORIA), Institut National de Recherche en Informatique et en Automatique (Inria)-Université Henri Poincaré - Nancy 1 (UHP)-Université Nancy 2-Institut National Polytechnique de Lorraine (INPL)-Centre National de la Recherche Scientifique (CNRS)-Université Henri Poincaré - Nancy 1 (UHP)-Université Nancy 2-Institut National Polytechnique de Lorraine (INPL)-Centre National de la Recherche Scientifique (CNRS), Algorithms and Models for Integrative Biology (AMIB ), Laboratoire d'informatique de l'École polytechnique Palaiseau (LIX), École polytechnique (X)-Centre National de la Recherche Scientifique (CNRS)-École polytechnique (X)-Centre National de la Recherche Scientifique (CNRS)-Laboratoire de Recherche en Informatique (LRI), Université Paris-Sud - Paris 11 (UP11)-CentraleSupélec-Centre National de la Recherche Scientifique (CNRS)-Université Paris-Sud - Paris 11 (UP11)-CentraleSupélec-Centre National de la Recherche Scientifique (CNRS)-Inria Saclay - Ile de France, Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche en Informatique et en Automatique (Inria), Physiologie de la reproduction et des comportements Nouzilly (PRC), Institut National de la Recherche Agronomique (INRA)-Institut Français du Cheval et de l'Equitation Saumur (IFCE)-Université de Tours (UT)-Centre National de la Recherche Scientifique (CNRS), Department of Chemical Engineering Bogazici (ChE), Boǧaziçi üniversitesi = Boğaziçi University Istanbul, Tel Aviv University (TAU), University of Massachusetts Medical School Worcester (UMASS), University of Massachusetts System (UMASS), Barcelona Supercomputing Center - Centro Nacional de Supercomputacion (BSC-CNS), Chinese Academy of Sciences Beijing (CAS), Beijing University of Technology, Laboratoire de biochimie théorique Paris (LBT (UPR_9080)), Institut de biologie physico-chimique (IBPC (FR_550)), Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université Paris Diderot - Paris 7 (UPD7)-Institut de Chimie - CNRS Chimie (INC-CNRS)-Centre National de la Recherche Scientifique (CNRS), Huazhong University of Science and Technology Wuhan (HUST), Hadassah Hebrew University Medical Center Jerusalem, Weizmann Institute of Science Rehovot, Israël, Institute for Protein Research Osaka, Osaka University Osaka, Japan Biological Informatics Consortium Tokyo, WPI Immunology Frontier Research Center (IFREC), Graduate School of Information Sciences Sendai, Tohoku University Sendai, Oregon State University (OSU), Indiana University - Purdue University Indianapolis (IUPUI), Indiana University System, Bijvoet Center for Biomolecular Research Utrecht, Universiteit Utrecht / Utrecht University Utrecht, University of Pittsburgh (PITT), Pennsylvania Commonwealth System of Higher Education (PCSHE), Johns Hopkins University (JHU), Tokyo Institute of Technology Tokyo (TITECH), University of North Carolina Chapel Hill (UNC), University of North Carolina System (UNC), Purdue University West Lafayette, Dalton Cardiovascular Research Center Columbia, University of Missouri Columbia (Mizzou), University of Missouri System-University of Missouri System, The Hospital for sick children Toronto (SickKids), Institut de biochimie et biophysique moléculaire et cellulaire (IBBMC), Université Paris-Sud - Paris 11 (UP11)-Centre National de la Recherche Scientifique (CNRS), The authors thank Sameer Velankar and Marc Lensink for their help in coordinating this experiment and Raik Grunberg for many helpful suggestions on a draft. S.J.F. was supported by a long-term fellowship from the Human Frontier Science Program. S.J.W. is Canada Research Chair Tier 1, funded by the Canadian Institutes of Health Research. Research in the Baker laboratory was supported by the Howard Hughes Medical Institute, the Defense Advanced Research Projects Agency, the National Institutes of Health Yeast Resource Center, and the Defense Threat Reduction Agency.
المصدر: ISSN: 0022-2836.
مصطلحات موضوعية: computational protein design, negative design, conformational plasticity, biochemistry and molecular biology, protein protein interactions, [SDV.BBM.BS]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Structural Biology [q-bio.BM]
العلاقة: info:eu-repo/semantics/altIdentifier/pmid/22001016; inria-00637848; https://inria.hal.science/inria-00637848Test; PRODINRA: 50264; PUBMED: 22001016; PUBMEDCENTRAL: PMC3839241; WOS: 000298127500010
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4دورية أكاديميةCommunity-Wide Assessment of Protein-Interface Modeling Suggests Improvements to Design Methodology.
المؤلفون: Fleishman, Sarel J, Whitehead, Timothy A, Strauch, Eva-Maria, Corn, Jacob E, Qin, Sanbo, Zhou, Huan-Xiang, Mitchell, Julie C, Demerdash, Omar N A, Takeda-Shitaka, Mayuko, Terashi, Genki, Moal, Iain H, Li, Xiaofan, Bates, Paul A, Zacharias, Martin, Park, Hahnbeom, Ko, Jun-Su, Lee, Hasup, Seok, Chaok, Bourquard, Thomas, Bernauer, Julie, Poupon, Anne, Azé, Jérôme, Soner, Seren, Ovali, Sefik Kerem, Ozbek, Pemra, Tal, Nir Ben, Haliloglu, Türkan, Hwang, Howook, Vreven, Thom, Pierce, Brian G, Weng, Zhiping, Pérez-Cano, Laura, Pons, Carles, Fernández-Recio, Juan, Jiang, Fan, Yang, Feng, Gong, Xinqi, Cao, Libin, Xu, Xianjin, Liu, Bin, Wang, Panwen, Li, Chunhua, Wang, Cunxin, Robert, Charles H, Guharoy, Mainak, Liu, Shiyong, Huang, Yangyu, Li, Lin, Guo, Dachuan, Chen, Ying, Xiao, Yi, London, Nir, Itzhaki, Zohar, Schueler-Furman, Ora, Inbar, Yuval, Patapov, Vladimir, Cohen, Mati, Schreiber, Gideon, Tsuchiya, Yuko, Kanamori, Eiji, Standley, Daron M, Nakamura, Haruki, Kinoshita, Kengo, Driggers, Camden M, Hall, Robert G, Morgan, Jessica L, Hsu, Victor L, Zhan, Jian, Yang, Yuedong, Zhou, Yaoqi, Kastritis, Panagiotis L, Bonvin, Alexandre M J J, Zhang, Weiyi, Camacho, Carlos J, Kilambi, Krishna P, Sircar, Aroop, Gray, Jeffrey J, Ohue, Masahito, Uchikoga, Nobuyuki, Matsuzaki, Yuri, Ishida, Takashi, Akiyama, Yutaka, Khashan, Raed, Bush, Stephen, Fouches, Denis, Tropsha, Alexander, Esquivel-Rodríguez, Juan, Kihara, Daisuke, Stranges, P Benjamin, Jacak, Ron, Kuhlman, Brian, Huang, Sheng-You, Zou, Xiaoqin, Wodak, Shoshana J, Janin, Joel, Baker, David
المساهمون: University of Washington Seattle, Institute of Molecular Biophysics Tallahassee, Florida State University Tallahassee (FSU), University of Wisconsin Whitewater, Kitasato University, Biomolecular Modelling laboratory London, Cancer Research UK London Research Institute, Technische Universität Munchen - Technical University Munich - Université Technique de Munich (TUM), Seoul National University Seoul (SNU), Knowledge representation, reasonning (ORPAILLEUR), INRIA Lorraine, Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche en Informatique et en Automatique (Inria)-Laboratoire Lorrain de Recherche en Informatique et ses Applications (LORIA), Institut National de Recherche en Informatique et en Automatique (Inria)-Université Henri Poincaré - Nancy 1 (UHP)-Université Nancy 2-Institut National Polytechnique de Lorraine (INPL)-Centre National de la Recherche Scientifique (CNRS)-Université Henri Poincaré - Nancy 1 (UHP)-Université Nancy 2-Institut National Polytechnique de Lorraine (INPL)-Centre National de la Recherche Scientifique (CNRS), Algorithms and Models for Integrative Biology (AMIB ), Laboratoire d'informatique de l'École polytechnique Palaiseau (LIX), École polytechnique (X)-Centre National de la Recherche Scientifique (CNRS)-École polytechnique (X)-Centre National de la Recherche Scientifique (CNRS)-Laboratoire de Recherche en Informatique (LRI), Université Paris-Sud - Paris 11 (UP11)-CentraleSupélec-Centre National de la Recherche Scientifique (CNRS)-Université Paris-Sud - Paris 11 (UP11)-CentraleSupélec-Centre National de la Recherche Scientifique (CNRS)-Inria Saclay - Ile de France, Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche en Informatique et en Automatique (Inria), Physiologie de la reproduction et des comportements Nouzilly (PRC), Institut National de la Recherche Agronomique (INRA)-Institut Français du Cheval et de l'Equitation Saumur (IFCE)-Université de Tours (UT)-Centre National de la Recherche Scientifique (CNRS), Department of Chemical Engineering Bogazici (ChE), Boǧaziçi üniversitesi = Boğaziçi University Istanbul, Tel Aviv University (TAU), University of Massachusetts Medical School Worcester (UMASS), University of Massachusetts System (UMASS), Barcelona Supercomputing Center - Centro Nacional de Supercomputacion (BSC-CNS), Chinese Academy of Sciences Beijing (CAS), Beijing University of Technology, Laboratoire de biochimie théorique Paris (LBT (UPR_9080)), Institut de biologie physico-chimique (IBPC (FR_550)), Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université Paris Diderot - Paris 7 (UPD7)-Institut de Chimie - CNRS Chimie (INC-CNRS)-Centre National de la Recherche Scientifique (CNRS), Huazhong University of Science and Technology Wuhan (HUST), Hadassah Hebrew University Medical Center Jerusalem, Weizmann Institute of Science Rehovot, Israël, Institute for Protein Research Osaka, Osaka University Osaka, Japan Biological Informatics Consortium Tokyo, WPI Immunology Frontier Research Center (IFREC), Graduate School of Information Sciences Sendai, Tohoku University Sendai, Oregon State University (OSU), Indiana University - Purdue University Indianapolis (IUPUI), Indiana University System, Bijvoet Center for Biomolecular Research Utrecht, Universiteit Utrecht / Utrecht University Utrecht, University of Pittsburgh (PITT), Pennsylvania Commonwealth System of Higher Education (PCSHE), Johns Hopkins University (JHU), Tokyo Institute of Technology Tokyo (TITECH), University of North Carolina Chapel Hill (UNC), University of North Carolina System (UNC), Purdue University West Lafayette, Dalton Cardiovascular Research Center Columbia, University of Missouri Columbia (Mizzou), University of Missouri System-University of Missouri System, The Hospital for sick children Toronto (SickKids), Institut de biochimie et biophysique moléculaire et cellulaire (IBBMC), Université Paris-Sud - Paris 11 (UP11)-Centre National de la Recherche Scientifique (CNRS), The authors thank Sameer Velankar and Marc Lensink for their help in coordinating this experiment and Raik Grunberg for many helpful suggestions on a draft. S.J.F. was supported by a long-term fellowship from the Human Frontier Science Program. S.J.W. is Canada Research Chair Tier 1, funded by the Canadian Institutes of Health Research. Research in the Baker laboratory was supported by the Howard Hughes Medical Institute, the Defense Advanced Research Projects Agency, the National Institutes of Health Yeast Resource Center, and the Defense Threat Reduction Agency.
المصدر: ISSN: 0022-2836.
مصطلحات موضوعية: computational protein design, negative design, conformational plasticity, biochemistry and molecular biology, protein protein interactions, [SDV.BBM.BS]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Structural Biology [q-bio.BM]
العلاقة: info:eu-repo/semantics/altIdentifier/pmid/22001016; inria-00637848; https://inria.hal.science/inria-00637848Test; PRODINRA: 50264; PUBMED: 22001016; PUBMEDCENTRAL: PMC3839241; WOS: 000298127500010
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5دورية أكاديميةCommunity-Wide Assessment of Protein-Interface Modeling Suggests Improvements to Design Methodology.
المؤلفون: Fleishman, Sarel J, Whitehead, Timothy A, Strauch, Eva-Maria, Corn, Jacob E, Qin, Sanbo, Zhou, Huan-Xiang, Mitchell, Julie C, Demerdash, Omar N A, Takeda-Shitaka, Mayuko, Terashi, Genki, Moal, Iain H, Li, Xiaofan, Bates, Paul A, Zacharias, Martin, Park, Hahnbeom, Ko, Jun-Su, Lee, Hasup, Seok, Chaok, Bourquard, Thomas, Bernauer, Julie, Poupon, Anne, Azé, Jérôme, Soner, Seren, Ovali, Sefik Kerem, Ozbek, Pemra, Tal, Nir Ben, Haliloglu, Türkan, Hwang, Howook, Vreven, Thom, Pierce, Brian G, Weng, Zhiping, Pérez-Cano, Laura, Pons, Carles, Fernández-Recio, Juan, Jiang, Fan, Yang, Feng, Gong, Xinqi, Cao, Libin, Xu, Xianjin, Liu, Bin, Wang, Panwen, Li, Chunhua, Wang, Cunxin, Robert, Charles H, Guharoy, Mainak, Liu, Shiyong, Huang, Yangyu, Li, Lin, Guo, Dachuan, Chen, Ying, Xiao, Yi, London, Nir, Itzhaki, Zohar, Schueler-Furman, Ora, Inbar, Yuval, Patapov, Vladimir, Cohen, Mati, Schreiber, Gideon, Tsuchiya, Yuko, Kanamori, Eiji, Standley, Daron M, Nakamura, Haruki, Kinoshita, Kengo, Driggers, Camden M, Hall, Robert G, Morgan, Jessica L, Hsu, Victor L, Zhan, Jian, Yang, Yuedong, Zhou, Yaoqi, Kastritis, Panagiotis L, Bonvin, Alexandre M J J, Zhang, Weiyi, Camacho, Carlos J, Kilambi, Krishna P, Sircar, Aroop, Gray, Jeffrey J, Ohue, Masahito, Uchikoga, Nobuyuki, Matsuzaki, Yuri, Ishida, Takashi, Akiyama, Yutaka, Khashan, Raed, Bush, Stephen, Fouches, Denis, Tropsha, Alexander, Esquivel-Rodríguez, Juan, Kihara, Daisuke, Stranges, P Benjamin, Jacak, Ron, Kuhlman, Brian, Huang, Sheng-You, Zou, Xiaoqin, Wodak, Shoshana J, Janin, Joel, Baker, David
المساهمون: University of Washington Seattle, Institute of Molecular Biophysics Tallahassee, Florida State University Tallahassee (FSU), University of Wisconsin Whitewater, Kitasato University, Biomolecular Modelling laboratory London, Cancer Research UK London Research Institute, Technische Universität Munchen - Technical University Munich - Université Technique de Munich (TUM), Seoul National University Seoul (SNU), Knowledge representation, reasonning (ORPAILLEUR), INRIA Lorraine, Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche en Informatique et en Automatique (Inria)-Laboratoire Lorrain de Recherche en Informatique et ses Applications (LORIA), Institut National de Recherche en Informatique et en Automatique (Inria)-Université Henri Poincaré - Nancy 1 (UHP)-Université Nancy 2-Institut National Polytechnique de Lorraine (INPL)-Centre National de la Recherche Scientifique (CNRS)-Université Henri Poincaré - Nancy 1 (UHP)-Université Nancy 2-Institut National Polytechnique de Lorraine (INPL)-Centre National de la Recherche Scientifique (CNRS), Algorithms and Models for Integrative Biology (AMIB ), Laboratoire d'informatique de l'École polytechnique Palaiseau (LIX), École polytechnique (X)-Centre National de la Recherche Scientifique (CNRS)-École polytechnique (X)-Centre National de la Recherche Scientifique (CNRS)-Laboratoire de Recherche en Informatique (LRI), Université Paris-Sud - Paris 11 (UP11)-CentraleSupélec-Centre National de la Recherche Scientifique (CNRS)-Université Paris-Sud - Paris 11 (UP11)-CentraleSupélec-Centre National de la Recherche Scientifique (CNRS)-Inria Saclay - Ile de France, Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche en Informatique et en Automatique (Inria), Physiologie de la reproduction et des comportements Nouzilly (PRC), Institut National de la Recherche Agronomique (INRA)-Institut Français du Cheval et de l'Equitation Saumur (IFCE)-Université de Tours (UT)-Centre National de la Recherche Scientifique (CNRS), Department of Chemical Engineering Bogazici (ChE), Boǧaziçi üniversitesi = Boğaziçi University Istanbul, Tel Aviv University (TAU), University of Massachusetts Medical School Worcester (UMASS), University of Massachusetts System (UMASS), Barcelona Supercomputing Center - Centro Nacional de Supercomputacion (BSC-CNS), Chinese Academy of Sciences Beijing (CAS), Beijing University of Technology, Laboratoire de biochimie théorique Paris (LBT (UPR_9080)), Institut de biologie physico-chimique (IBPC (FR_550)), Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université Paris Diderot - Paris 7 (UPD7)-Institut de Chimie - CNRS Chimie (INC-CNRS)-Centre National de la Recherche Scientifique (CNRS), Huazhong University of Science and Technology Wuhan (HUST), Hadassah Hebrew University Medical Center Jerusalem, Weizmann Institute of Science Rehovot, Israël, Institute for Protein Research Osaka, Osaka University Osaka, Japan Biological Informatics Consortium Tokyo, WPI Immunology Frontier Research Center (IFREC), Graduate School of Information Sciences Sendai, Tohoku University Sendai, Oregon State University (OSU), Indiana University - Purdue University Indianapolis (IUPUI), Indiana University System, Bijvoet Center for Biomolecular Research Utrecht, Universiteit Utrecht / Utrecht University Utrecht, University of Pittsburgh (PITT), Pennsylvania Commonwealth System of Higher Education (PCSHE), Johns Hopkins University (JHU), Tokyo Institute of Technology Tokyo (TITECH), University of North Carolina Chapel Hill (UNC), University of North Carolina System (UNC), Purdue University West Lafayette, Dalton Cardiovascular Research Center Columbia, University of Missouri Columbia (Mizzou), University of Missouri System-University of Missouri System, The Hospital for sick children Toronto (SickKids), Institut de biochimie et biophysique moléculaire et cellulaire (IBBMC), Université Paris-Sud - Paris 11 (UP11)-Centre National de la Recherche Scientifique (CNRS), The authors thank Sameer Velankar and Marc Lensink for their help in coordinating this experiment and Raik Grunberg for many helpful suggestions on a draft. S.J.F. was supported by a long-term fellowship from the Human Frontier Science Program. S.J.W. is Canada Research Chair Tier 1, funded by the Canadian Institutes of Health Research. Research in the Baker laboratory was supported by the Howard Hughes Medical Institute, the Defense Advanced Research Projects Agency, the National Institutes of Health Yeast Resource Center, and the Defense Threat Reduction Agency.
المصدر: ISSN: 0022-2836.
مصطلحات موضوعية: computational protein design, negative design, conformational plasticity, biochemistry and molecular biology, protein protein interactions, [SDV.BBM.BS]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Structural Biology [q-bio.BM]
العلاقة: info:eu-repo/semantics/altIdentifier/pmid/22001016; inria-00637848; https://inria.hal.science/inria-00637848Test; PRODINRA: 50264; PUBMED: 22001016; PUBMEDCENTRAL: PMC3839241; WOS: 000298127500010
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6دورية أكاديميةCommunity-Wide Assessment of Protein-Interface Modeling Suggests Improvements to Design Methodology.
المؤلفون: Fleishman, Sarel J, Whitehead, Timothy A, Strauch, Eva-Maria, Corn, Jacob E, Qin, Sanbo, Zhou, Huan-Xiang, Mitchell, Julie C, Demerdash, Omar N A, Takeda-Shitaka, Mayuko, Terashi, Genki, Moal, Iain H, Li, Xiaofan, Bates, Paul A, Zacharias, Martin, Park, Hahnbeom, Ko, Jun-Su, Lee, Hasup, Seok, Chaok, Bourquard, Thomas, Bernauer, Julie, Poupon, Anne, Azé, Jérôme, Soner, Seren, Ovali, Sefik Kerem, Ozbek, Pemra, Tal, Nir Ben, Haliloglu, Türkan, Hwang, Howook, Vreven, Thom, Pierce, Brian G, Weng, Zhiping, Pérez-Cano, Laura, Pons, Carles, Fernández-Recio, Juan, Jiang, Fan, Yang, Feng, Gong, Xinqi, Cao, Libin, Xu, Xianjin, Liu, Bin, Wang, Panwen, Li, Chunhua, Wang, Cunxin, Robert, Charles H, Guharoy, Mainak, Liu, Shiyong, Huang, Yangyu, Li, Lin, Guo, Dachuan, Chen, Ying, Xiao, Yi, London, Nir, Itzhaki, Zohar, Schueler-Furman, Ora, Inbar, Yuval, Patapov, Vladimir, Cohen, Mati, Schreiber, Gideon, Tsuchiya, Yuko, Kanamori, Eiji, Standley, Daron M, Nakamura, Haruki, Kinoshita, Kengo, Driggers, Camden M, Hall, Robert G, Morgan, Jessica L, Hsu, Victor L, Zhan, Jian, Yang, Yuedong, Zhou, Yaoqi, Kastritis, Panagiotis L, Bonvin, Alexandre M J J, Zhang, Weiyi, Camacho, Carlos J, Kilambi, Krishna P, Sircar, Aroop, Gray, Jeffrey J, Ohue, Masahito, Uchikoga, Nobuyuki, Matsuzaki, Yuri, Ishida, Takashi, Akiyama, Yutaka, Khashan, Raed, Bush, Stephen, Fouches, Denis, Tropsha, Alexander, Esquivel-Rodríguez, Juan, Kihara, Daisuke, Stranges, P Benjamin, Jacak, Ron, Kuhlman, Brian, Huang, Sheng-You, Zou, Xiaoqin, Wodak, Shoshana J, Janin, Joel, Baker, David
المساهمون: University of Washington Seattle, Institute of Molecular Biophysics Tallahassee, Florida State University Tallahassee (FSU), University of Wisconsin Whitewater, Kitasato University, Biomolecular Modelling laboratory London, Cancer Research UK London Research Institute, Technische Universität Munchen - Technical University Munich - Université Technique de Munich (TUM), Seoul National University Seoul (SNU), Knowledge representation, reasonning (ORPAILLEUR), INRIA Lorraine, Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche en Informatique et en Automatique (Inria)-Laboratoire Lorrain de Recherche en Informatique et ses Applications (LORIA), Institut National de Recherche en Informatique et en Automatique (Inria)-Université Henri Poincaré - Nancy 1 (UHP)-Université Nancy 2-Institut National Polytechnique de Lorraine (INPL)-Centre National de la Recherche Scientifique (CNRS)-Université Henri Poincaré - Nancy 1 (UHP)-Université Nancy 2-Institut National Polytechnique de Lorraine (INPL)-Centre National de la Recherche Scientifique (CNRS), Algorithms and Models for Integrative Biology (AMIB ), Laboratoire d'informatique de l'École polytechnique Palaiseau (LIX), École polytechnique (X)-Centre National de la Recherche Scientifique (CNRS)-École polytechnique (X)-Centre National de la Recherche Scientifique (CNRS)-Laboratoire de Recherche en Informatique (LRI), Université Paris-Sud - Paris 11 (UP11)-CentraleSupélec-Centre National de la Recherche Scientifique (CNRS)-Université Paris-Sud - Paris 11 (UP11)-CentraleSupélec-Centre National de la Recherche Scientifique (CNRS)-Inria Saclay - Ile de France, Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche en Informatique et en Automatique (Inria), Physiologie de la reproduction et des comportements Nouzilly (PRC), Institut National de la Recherche Agronomique (INRA)-Institut Français du Cheval et de l'Equitation Saumur (IFCE)-Université de Tours (UT)-Centre National de la Recherche Scientifique (CNRS), Department of Chemical Engineering Bogazici (ChE), Boǧaziçi üniversitesi = Boğaziçi University Istanbul, Tel Aviv University (TAU), University of Massachusetts Medical School Worcester (UMASS), University of Massachusetts System (UMASS), Barcelona Supercomputing Center - Centro Nacional de Supercomputacion (BSC-CNS), Chinese Academy of Sciences Beijing (CAS), Beijing University of Technology, Laboratoire de biochimie théorique Paris (LBT (UPR_9080)), Institut de biologie physico-chimique (IBPC (FR_550)), Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université Paris Diderot - Paris 7 (UPD7)-Institut de Chimie - CNRS Chimie (INC-CNRS)-Centre National de la Recherche Scientifique (CNRS), Huazhong University of Science and Technology Wuhan (HUST), Hadassah Hebrew University Medical Center Jerusalem, Weizmann Institute of Science Rehovot, Israël, Institute for Protein Research Osaka, Osaka University Osaka, Japan Biological Informatics Consortium Tokyo, WPI Immunology Frontier Research Center (IFREC), Graduate School of Information Sciences Sendai, Tohoku University Sendai, Oregon State University (OSU), Indiana University - Purdue University Indianapolis (IUPUI), Indiana University System, Bijvoet Center for Biomolecular Research Utrecht, Universiteit Utrecht / Utrecht University Utrecht, University of Pittsburgh (PITT), Pennsylvania Commonwealth System of Higher Education (PCSHE), Johns Hopkins University (JHU), Tokyo Institute of Technology Tokyo (TITECH), University of North Carolina Chapel Hill (UNC), University of North Carolina System (UNC), Purdue University West Lafayette, Dalton Cardiovascular Research Center Columbia, University of Missouri Columbia (Mizzou), University of Missouri System-University of Missouri System, The Hospital for sick children Toronto (SickKids), Institut de biochimie et biophysique moléculaire et cellulaire (IBBMC), Université Paris-Sud - Paris 11 (UP11)-Centre National de la Recherche Scientifique (CNRS), The authors thank Sameer Velankar and Marc Lensink for their help in coordinating this experiment and Raik Grunberg for many helpful suggestions on a draft. S.J.F. was supported by a long-term fellowship from the Human Frontier Science Program. S.J.W. is Canada Research Chair Tier 1, funded by the Canadian Institutes of Health Research. Research in the Baker laboratory was supported by the Howard Hughes Medical Institute, the Defense Advanced Research Projects Agency, the National Institutes of Health Yeast Resource Center, and the Defense Threat Reduction Agency.
المصدر: ISSN: 0022-2836.
مصطلحات موضوعية: computational protein design, negative design, conformational plasticity, biochemistry and molecular biology, protein protein interactions, [SDV.BBM.BS]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Structural Biology [q-bio.BM]
العلاقة: info:eu-repo/semantics/altIdentifier/pmid/22001016; inria-00637848; https://inria.hal.science/inria-00637848Test; PRODINRA: 50264; PUBMED: 22001016; PUBMEDCENTRAL: PMC3839241; WOS: 000298127500010
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7دورية أكاديميةCommunity-Wide Assessment of Protein-Interface Modeling Suggests Improvements to Design Methodology.
المؤلفون: Fleishman, Sarel J, Whitehead, Timothy A, Strauch, Eva-Maria, Corn, Jacob E, Qin, Sanbo, Zhou, Huan-Xiang, Mitchell, Julie C, Demerdash, Omar N A, Takeda-Shitaka, Mayuko, Terashi, Genki, Moal, Iain H, Li, Xiaofan, Bates, Paul A, Zacharias, Martin, Park, Hahnbeom, Ko, Jun-Su, Lee, Hasup, Seok, Chaok, Bourquard, Thomas, Bernauer, Julie, Poupon, Anne, Azé, Jérôme, Soner, Seren, Ovali, Sefik Kerem, Ozbek, Pemra, Tal, Nir Ben, Haliloglu, Türkan, Hwang, Howook, Vreven, Thom, Pierce, Brian G, Weng, Zhiping, Pérez-Cano, Laura, Pons, Carles, Fernández-Recio, Juan, Jiang, Fan, Yang, Feng, Gong, Xinqi, Cao, Libin, Xu, Xianjin, Liu, Bin, Wang, Panwen, Li, Chunhua, Wang, Cunxin, Robert, Charles H, Guharoy, Mainak, Liu, Shiyong, Huang, Yangyu, Li, Lin, Guo, Dachuan, Chen, Ying, Xiao, Yi, London, Nir, Itzhaki, Zohar, Schueler-Furman, Ora, Inbar, Yuval, Patapov, Vladimir, Cohen, Mati, Schreiber, Gideon, Tsuchiya, Yuko, Kanamori, Eiji, Standley, Daron M, Nakamura, Haruki, Kinoshita, Kengo, Driggers, Camden M, Hall, Robert G, Morgan, Jessica L, Hsu, Victor L, Zhan, Jian, Yang, Yuedong, Zhou, Yaoqi, Kastritis, Panagiotis L, Bonvin, Alexandre M J J, Zhang, Weiyi, Camacho, Carlos J, Kilambi, Krishna P, Sircar, Aroop, Gray, Jeffrey J, Ohue, Masahito, Uchikoga, Nobuyuki, Matsuzaki, Yuri, Ishida, Takashi, Akiyama, Yutaka, Khashan, Raed, Bush, Stephen, Fouches, Denis, Tropsha, Alexander, Esquivel-Rodríguez, Juan, Kihara, Daisuke, Stranges, P Benjamin, Jacak, Ron, Kuhlman, Brian, Huang, Sheng-You, Zou, Xiaoqin, Wodak, Shoshana J, Janin, Joel, Baker, David
المساهمون: University of Washington Seattle, Institute of Molecular Biophysics Tallahassee, Florida State University Tallahassee (FSU), University of Wisconsin Whitewater, Kitasato University, Biomolecular Modelling laboratory London, Cancer Research UK London Research Institute, Technische Universität Munchen - Technical University Munich - Université Technique de Munich (TUM), Seoul National University Seoul (SNU), Knowledge representation, reasonning (ORPAILLEUR), INRIA Lorraine, Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche en Informatique et en Automatique (Inria)-Laboratoire Lorrain de Recherche en Informatique et ses Applications (LORIA), Institut National de Recherche en Informatique et en Automatique (Inria)-Université Henri Poincaré - Nancy 1 (UHP)-Université Nancy 2-Institut National Polytechnique de Lorraine (INPL)-Centre National de la Recherche Scientifique (CNRS)-Université Henri Poincaré - Nancy 1 (UHP)-Université Nancy 2-Institut National Polytechnique de Lorraine (INPL)-Centre National de la Recherche Scientifique (CNRS), Algorithms and Models for Integrative Biology (AMIB ), Laboratoire d'informatique de l'École polytechnique Palaiseau (LIX), École polytechnique (X)-Centre National de la Recherche Scientifique (CNRS)-École polytechnique (X)-Centre National de la Recherche Scientifique (CNRS)-Laboratoire de Recherche en Informatique (LRI), Université Paris-Sud - Paris 11 (UP11)-CentraleSupélec-Centre National de la Recherche Scientifique (CNRS)-Université Paris-Sud - Paris 11 (UP11)-CentraleSupélec-Centre National de la Recherche Scientifique (CNRS)-Inria Saclay - Ile de France, Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche en Informatique et en Automatique (Inria), Physiologie de la reproduction et des comportements Nouzilly (PRC), Institut National de la Recherche Agronomique (INRA)-Institut Français du Cheval et de l'Equitation Saumur (IFCE)-Université de Tours (UT)-Centre National de la Recherche Scientifique (CNRS), Department of Chemical Engineering Bogazici (ChE), Boǧaziçi üniversitesi = Boğaziçi University Istanbul, Tel Aviv University (TAU), University of Massachusetts Medical School Worcester (UMASS), University of Massachusetts System (UMASS), Barcelona Supercomputing Center - Centro Nacional de Supercomputacion (BSC-CNS), Chinese Academy of Sciences Beijing (CAS), Beijing University of Technology, Laboratoire de biochimie théorique Paris (LBT (UPR_9080)), Institut de biologie physico-chimique (IBPC (FR_550)), Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université Paris Diderot - Paris 7 (UPD7)-Institut de Chimie - CNRS Chimie (INC-CNRS)-Centre National de la Recherche Scientifique (CNRS), Huazhong University of Science and Technology Wuhan (HUST), Hadassah Hebrew University Medical Center Jerusalem, Weizmann Institute of Science Rehovot, Israël, Institute for Protein Research Osaka, Osaka University Osaka, Japan Biological Informatics Consortium Tokyo, WPI Immunology Frontier Research Center (IFREC), Graduate School of Information Sciences Sendai, Tohoku University Sendai, Oregon State University (OSU), Indiana University - Purdue University Indianapolis (IUPUI), Indiana University System, Bijvoet Center for Biomolecular Research Utrecht, Universiteit Utrecht / Utrecht University Utrecht, University of Pittsburgh (PITT), Pennsylvania Commonwealth System of Higher Education (PCSHE), Johns Hopkins University (JHU), Tokyo Institute of Technology Tokyo (TITECH), University of North Carolina Chapel Hill (UNC), University of North Carolina System (UNC), Purdue University West Lafayette, Dalton Cardiovascular Research Center Columbia, University of Missouri Columbia (Mizzou), University of Missouri System-University of Missouri System, The Hospital for sick children Toronto (SickKids), Institut de biochimie et biophysique moléculaire et cellulaire (IBBMC), Université Paris-Sud - Paris 11 (UP11)-Centre National de la Recherche Scientifique (CNRS), The authors thank Sameer Velankar and Marc Lensink for their help in coordinating this experiment and Raik Grunberg for many helpful suggestions on a draft. S.J.F. was supported by a long-term fellowship from the Human Frontier Science Program. S.J.W. is Canada Research Chair Tier 1, funded by the Canadian Institutes of Health Research. Research in the Baker laboratory was supported by the Howard Hughes Medical Institute, the Defense Advanced Research Projects Agency, the National Institutes of Health Yeast Resource Center, and the Defense Threat Reduction Agency.
المصدر: ISSN: 0022-2836.
مصطلحات موضوعية: computational protein design, negative design, conformational plasticity, biochemistry and molecular biology, protein protein interactions, [SDV.BBM.BS]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Structural Biology [q-bio.BM]
العلاقة: info:eu-repo/semantics/altIdentifier/pmid/22001016; inria-00637848; https://inria.hal.science/inria-00637848Test; PRODINRA: 50264; PUBMED: 22001016; PUBMEDCENTRAL: PMC3839241; WOS: 000298127500010
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8دورية أكاديميةCommunity-Wide Assessment of Protein-Interface Modeling Suggests Improvements to Design Methodology.
المؤلفون: Fleishman, Sarel J, Whitehead, Timothy A, Strauch, Eva-Maria, Corn, Jacob E, Qin, Sanbo, Zhou, Huan-Xiang, Mitchell, Julie C, Demerdash, Omar N A, Takeda-Shitaka, Mayuko, Terashi, Genki, Moal, Iain H, Li, Xiaofan, Bates, Paul A, Zacharias, Martin, Park, Hahnbeom, Ko, Jun-Su, Lee, Hasup, Seok, Chaok, Bourquard, Thomas, Bernauer, Julie, Poupon, Anne, Azé, Jérôme, Soner, Seren, Ovali, Sefik Kerem, Ozbek, Pemra, Tal, Nir Ben, Haliloglu, Türkan, Hwang, Howook, Vreven, Thom, Pierce, Brian G, Weng, Zhiping, Pérez-Cano, Laura, Pons, Carles, Fernández-Recio, Juan, Jiang, Fan, Yang, Feng, Gong, Xinqi, Cao, Libin, Xu, Xianjin, Liu, Bin, Wang, Panwen, Li, Chunhua, Wang, Cunxin, Robert, Charles H, Guharoy, Mainak, Liu, Shiyong, Huang, Yangyu, Li, Lin, Guo, Dachuan, Chen, Ying, Xiao, Yi, London, Nir, Itzhaki, Zohar, Schueler-Furman, Ora, Inbar, Yuval, Patapov, Vladimir, Cohen, Mati, Schreiber, Gideon, Tsuchiya, Yuko, Kanamori, Eiji, Standley, Daron M, Nakamura, Haruki, Kinoshita, Kengo, Driggers, Camden M, Hall, Robert G, Morgan, Jessica L, Hsu, Victor L, Zhan, Jian, Yang, Yuedong, Zhou, Yaoqi, Kastritis, Panagiotis L, Bonvin, Alexandre M J J, Zhang, Weiyi, Camacho, Carlos J, Kilambi, Krishna P, Sircar, Aroop, Gray, Jeffrey J, Ohue, Masahito, Uchikoga, Nobuyuki, Matsuzaki, Yuri, Ishida, Takashi, Akiyama, Yutaka, Khashan, Raed, Bush, Stephen, Fouches, Denis, Tropsha, Alexander, Esquivel-Rodríguez, Juan, Kihara, Daisuke, Stranges, P Benjamin, Jacak, Ron, Kuhlman, Brian, Huang, Sheng-You, Zou, Xiaoqin, Wodak, Shoshana J, Janin, Joel, Baker, David
المساهمون: University of Washington Seattle, Institute of Molecular Biophysics Tallahassee, Florida State University Tallahassee (FSU), University of Wisconsin Whitewater, Kitasato University, Biomolecular Modelling laboratory London, Cancer Research UK London Research Institute, Technische Universität Munchen - Technical University Munich - Université Technique de Munich (TUM), Seoul National University Seoul (SNU), Knowledge representation, reasonning (ORPAILLEUR), INRIA Lorraine, Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche en Informatique et en Automatique (Inria)-Laboratoire Lorrain de Recherche en Informatique et ses Applications (LORIA), Institut National de Recherche en Informatique et en Automatique (Inria)-Université Henri Poincaré - Nancy 1 (UHP)-Université Nancy 2-Institut National Polytechnique de Lorraine (INPL)-Centre National de la Recherche Scientifique (CNRS)-Université Henri Poincaré - Nancy 1 (UHP)-Université Nancy 2-Institut National Polytechnique de Lorraine (INPL)-Centre National de la Recherche Scientifique (CNRS), Algorithms and Models for Integrative Biology (AMIB ), Laboratoire d'informatique de l'École polytechnique Palaiseau (LIX), École polytechnique (X)-Centre National de la Recherche Scientifique (CNRS)-École polytechnique (X)-Centre National de la Recherche Scientifique (CNRS)-Laboratoire de Recherche en Informatique (LRI), Université Paris-Sud - Paris 11 (UP11)-CentraleSupélec-Centre National de la Recherche Scientifique (CNRS)-Université Paris-Sud - Paris 11 (UP11)-CentraleSupélec-Centre National de la Recherche Scientifique (CNRS)-Inria Saclay - Ile de France, Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche en Informatique et en Automatique (Inria), Physiologie de la reproduction et des comportements Nouzilly (PRC), Institut National de la Recherche Agronomique (INRA)-Institut Français du Cheval et de l'Equitation Saumur (IFCE)-Université de Tours (UT)-Centre National de la Recherche Scientifique (CNRS), Department of Chemical Engineering Bogazici (ChE), Boǧaziçi üniversitesi = Boğaziçi University Istanbul, Tel Aviv University (TAU), University of Massachusetts Medical School Worcester (UMASS), University of Massachusetts System (UMASS), Barcelona Supercomputing Center - Centro Nacional de Supercomputacion (BSC-CNS), Chinese Academy of Sciences Beijing (CAS), Beijing University of Technology, Laboratoire de biochimie théorique Paris (LBT (UPR_9080)), Institut de biologie physico-chimique (IBPC (FR_550)), Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université Paris Diderot - Paris 7 (UPD7)-Institut de Chimie - CNRS Chimie (INC-CNRS)-Centre National de la Recherche Scientifique (CNRS), Huazhong University of Science and Technology Wuhan (HUST), Hadassah Hebrew University Medical Center Jerusalem, Weizmann Institute of Science Rehovot, Israël, Institute for Protein Research Osaka, Osaka University Osaka, Japan Biological Informatics Consortium Tokyo, WPI Immunology Frontier Research Center (IFREC), Graduate School of Information Sciences Sendai, Tohoku University Sendai, Oregon State University (OSU), Indiana University - Purdue University Indianapolis (IUPUI), Indiana University System, Bijvoet Center for Biomolecular Research Utrecht, Universiteit Utrecht / Utrecht University Utrecht, University of Pittsburgh (PITT), Pennsylvania Commonwealth System of Higher Education (PCSHE), Johns Hopkins University (JHU), Tokyo Institute of Technology Tokyo (TITECH), University of North Carolina Chapel Hill (UNC), University of North Carolina System (UNC), Purdue University West Lafayette, Dalton Cardiovascular Research Center Columbia, University of Missouri Columbia (Mizzou), University of Missouri System-University of Missouri System, The Hospital for sick children Toronto (SickKids), Institut de biochimie et biophysique moléculaire et cellulaire (IBBMC), Université Paris-Sud - Paris 11 (UP11)-Centre National de la Recherche Scientifique (CNRS), The authors thank Sameer Velankar and Marc Lensink for their help in coordinating this experiment and Raik Grunberg for many helpful suggestions on a draft. S.J.F. was supported by a long-term fellowship from the Human Frontier Science Program. S.J.W. is Canada Research Chair Tier 1, funded by the Canadian Institutes of Health Research. Research in the Baker laboratory was supported by the Howard Hughes Medical Institute, the Defense Advanced Research Projects Agency, the National Institutes of Health Yeast Resource Center, and the Defense Threat Reduction Agency.
المصدر: ISSN: 0022-2836.
مصطلحات موضوعية: computational protein design, negative design, conformational plasticity, biochemistry and molecular biology, protein protein interactions, [SDV.BBM.BS]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Structural Biology [q-bio.BM]
العلاقة: info:eu-repo/semantics/altIdentifier/pmid/22001016; inria-00637848; https://inria.hal.science/inria-00637848Test; PRODINRA: 50264; PUBMED: 22001016; PUBMEDCENTRAL: PMC3839241; WOS: 000298127500010
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9دورية أكاديميةCommunity-Wide Assessment of Protein-Interface Modeling Suggests Improvements to Design Methodology.
المؤلفون: Fleishman, Sarel J, Whitehead, Timothy A, Strauch, Eva-Maria, Corn, Jacob E, Qin, Sanbo, Zhou, Huan-Xiang, Mitchell, Julie C, Demerdash, Omar N A, Takeda-Shitaka, Mayuko, Terashi, Genki, Moal, Iain H, Li, Xiaofan, Bates, Paul A, Zacharias, Martin, Park, Hahnbeom, Ko, Jun-Su, Lee, Hasup, Seok, Chaok, Bourquard, Thomas, Bernauer, Julie, Poupon, Anne, Azé, Jérôme, Soner, Seren, Ovalı, Sefik Kerem, Ozbek, Pemra, Tal, Nir Ben, Haliloglu, Türkan, Hwang, Howook, Vreven, Thom, Pierce, Brian G, Weng, Zhiping, Pérez-Cano, Laura, Pons, Carles, Fernández-Recio, Juan, Jiang, Fan, Yang, Feng, Gong, Xinqi, Cao, Libin, Xu, Xianjin, Liu, Bin, Wang, Panwen, Li, Chunhua, Wang, Cunxin, Robert, Charles H, Guharoy, Mainak, Liu, Shiyong, Huang, Yangyu, Li, Lin, Guo, Dachuan, Chen, Ying, Xiao, Yi, London, Nir, Itzhaki, Zohar, Schueler-Furman, Ora, Inbar, Yuval, Patapov, Vladimir, Cohen, Mati, Schreiber, Gideon, Tsuchiya, Yuko, Kanamori, Eiji, Standley, Daron M, Nakamura, Haruki, Kinoshita, Kengo, Driggers, Camden M, Hall, Robert G, Morgan, Jessica L, Hsu, Victor L, Zhan, Jian, Yang, Yuedong, Zhou, Yaoqi, Kastritis, Panagiotis L, Bonvin, Alexandre M J J, Zhang, Weiyi, Camacho, Carlos J, Kilambi, Krishna P, Sircar, Aroop, Gray, Jeffrey J, Ohue, Masahito, Uchikoga, Nobuyuki, Matsuzaki, Yuri, Ishida, Takashi, Akiyama, Yutaka, Khashan, Raed, Bush, Stephen, Fouches, Denis, Tropsha, Alexander, Esquivel-Rodríguez, Juan, Kihara, Daisuke, Stranges, P Benjamin, Jacak, Ron, Kuhlman, Brian, Huang, Sheng-You, Zou, Xiaoqin, Wodak, Shoshana J, Janin, Joel, Baker, David
المساهمون: University of Washington Seattle, Institute of Molecular Biophysics Tallahassee, Florida State University Tallahassee (FSU), University of Wisconsin Whitewater, Kitasato University, Biomolecular Modelling laboratory London, Cancer Research UK London Research Institute, Technical University of Munich (TUM), Seoul National University Seoul (SNU), Knowledge representation, reasonning (ORPAILLEUR), INRIA Lorraine, Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche en Informatique et en Automatique (Inria)-Laboratoire Lorrain de Recherche en Informatique et ses Applications (LORIA), Institut National de Recherche en Informatique et en Automatique (Inria)-Université Henri Poincaré - Nancy 1 (UHP)-Université Nancy 2-Institut National Polytechnique de Lorraine (INPL)-Centre National de la Recherche Scientifique (CNRS)-Université Henri Poincaré - Nancy 1 (UHP)-Université Nancy 2-Institut National Polytechnique de Lorraine (INPL)-Centre National de la Recherche Scientifique (CNRS), Algorithms and Models for Integrative Biology (AMIB ), Laboratoire d'informatique de l'École polytechnique Palaiseau (LIX), Centre National de la Recherche Scientifique (CNRS)-École polytechnique (X)-Centre National de la Recherche Scientifique (CNRS)-École polytechnique (X)-Laboratoire de Recherche en Informatique (LRI), Université Paris-Sud - Paris 11 (UP11)-CentraleSupélec-Centre National de la Recherche Scientifique (CNRS)-Université Paris-Sud - Paris 11 (UP11)-CentraleSupélec-Centre National de la Recherche Scientifique (CNRS)-Inria Saclay - Ile de France, Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche en Informatique et en Automatique (Inria), Physiologie de la reproduction et des comportements Nouzilly (PRC), Institut National de la Recherche Agronomique (INRA)-Institut Français du Cheval et de l'Equitation Saumur -Université de Tours-Centre National de la Recherche Scientifique (CNRS), Department of Chemical Engineering Bogazici (ChE), Boğaziçi University Istanbul, Tel Aviv University Tel Aviv, University of Massachusetts Medical School Worcester (UMASS), University of Massachusetts System (UMASS), Barcelona Supercomputing Center - Centro Nacional de Supercomputacion (BSC - CNS), Chinese Academy of Sciences Beijing (CAS), Beijing University of Technology, Laboratoire de biochimie théorique Paris (LBT (UPR_9080)), Université Paris Diderot - Paris 7 (UPD7)-Centre National de la Recherche Scientifique (CNRS)-Institut de biologie physico-chimique (IBPC (FR_550)), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Institut de Chimie du CNRS (INC), Huazhong University of Science and Technology Wuhan (HUST), Hadassah Hebrew University Medical Center Jerusalem, Weizmann Institute of Science Rehovot, Israël, Institute for Protein Research Osaka, Osaka University Osaka, Japan Biological Informatics Consortium Tokyo, WPI Immunology Frontier Research Center (IFREC), Graduate School of Information Sciences Sendai, Tohoku University Sendai, Oregon State University (OSU), Indiana University - Purdue University Indianapolis (IUPUI), Indiana University System, Bijvoet Center for Biomolecular Research Utrecht, Utrecht University Utrecht, University of Pittsburgh (PITT), Pennsylvania Commonwealth System of Higher Education (PCSHE), Johns Hopkins University (JHU), Tokyo Institute of Technology Tokyo (TITECH), University of North Carolina Chapel Hill (UNC), University of North Carolina System (UNC), Purdue University West Lafayette, Dalton Cardiovascular Research Center Columbia, University of Missouri Columbia (Mizzou), University of Missouri System-University of Missouri System, The Hospital for sick children Toronto (SickKids), Institut de biochimie et biophysique moléculaire et cellulaire (IBBMC), Université Paris-Sud - Paris 11 (UP11)-Centre National de la Recherche Scientifique (CNRS), The authors thank Sameer Velankar and Marc Lensink for their help in coordinating this experiment and Raik Grunberg for many helpful suggestions on a draft. S.J.F. was supported by a long-term fellowship from the Human Frontier Science Program. S.J.W. is Canada Research Chair Tier 1, funded by the Canadian Institutes of Health Research. Research in the Baker laboratory was supported by the Howard Hughes Medical Institute, the Defense Advanced Research Projects Agency, the National Institutes of Health Yeast Resource Center, and the Defense Threat Reduction Agency.
المصدر: ISSN: 0022-2836.
مصطلحات موضوعية: computational protein design, negative design, conformational plasticity, biochemistry and molecular biology, protein protein interactions, [SDV.BBM.BS]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Structural Biology [q-bio.BM]
العلاقة: info:eu-repo/semantics/altIdentifier/pmid/22001016; inria-00637848; https://hal.inria.fr/inria-00637848Test; PRODINRA: 50264; PUBMED: 22001016; WOS: 000298127500010
