المؤلفون: Tiejun Dong (11269421), Tong Gong (618843), Wenfei Li (1461220)

مصطلحات موضوعية: Biophysics, Biochemistry, Medicine, Genetics, Molecular Biology, Biotechnology, Immunology, Cancer, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, Solvent Accessible Surface Area, Deep Learning Coarse-grained, CG structures, CG biomolecular structures, CG protein models, estimation, learning-based SASA estimator, drug design, Extensive testing analysis, CG RNA structures, Coarse-Grained Biomolecular Structures

العلاقة: https://figshare.com/articles/journal_contribution/Accurate_Estimation_of_Solvent_Accessible_Surface_Area_for_Coarse-Grained_Biomolecular_Structures_with_Deep_Learning/15161159Test

الإتاحة: https://doi.org/10.1021/acs.jpcb.1c05203.s001Test

المؤلفون: Yalong Cong (5681411), Yinghui Feng (5516987), Hui Ni (1998790), Fengdong Zhi (11008553), Yulu Miao (11008556), Bohuan Fang (11008559), Lujia Zhang (790750), John Z. H. Zhang (7136237)

مصطلحات موضوعية: Biophysics, Biochemistry, Molecular Biology, Immunology, Biological Sciences not elsewhere classified, Physical Sciences not elsewhere classified, Information Systems not elsewhere classified, N 450-F region, G 496-V locks ACE 2, angiotensin-converting enzyme 2, Anchor-Locker Binding Mechanism, solvent-accessible surface area, Computational Analysis COVID -19, SASA, Coronavirus Spike Protein, Y 473-F acts, umbrella sampling simulation, binding, ACE 2. Loop 2, mechanism, ACE 2 recognition, S protein, RBD, β- sheet 1

العلاقة: https://figshare.com/articles/journal_contribution/Anchor-Locker_Binding_Mechanism_of_the_Coronavirus_Spike_Protein_to_Human_ACE2_Insights_from_Computational_Analysis/14823602Test

الإتاحة: https://doi.org/10.1021/acs.jcim.1c00241.s001Test

المؤلفون: Mohammed H. AL Mughram, Claudio Catalano, Noah B. Herrington, Martin K. Safo, Glen E. Kellogg

مصطلحات موضوعية: Biochemistry, Molecular Biology, Structural Biology, Enzymes, Protein Trafficking, Proteomics and Intermolecular Interactions (excl. Medical Proteomics), Receptors and Membrane Biology, Signal Transduction, Structural Biology (incl. Macromolecular Modelling), Synthetic Biology, hydrophobic residues, hydropathic interactions, solvent-accessible surface area (SASA), membrane proteins, lipid interactions

العلاقة: https://figshare.com/articles/dataset/DataSheet1_3D_interaction_homology_The_hydrophobic_residues_alanine_isoleucine_leucine_proline_and_valine_play_different_structural_roles_in_soluble_and_membrane_proteins_zip/22345552Test

الإتاحة: https://doi.org/10.3389/fmolb.2023.1116868.s001Test
https://figshare.com/articles/dataset/DataSheet1_3D_interaction_homology_The_hydrophobic_residues_alanine_isoleucine_leucine_proline_and_valine_play_different_structural_roles_in_soluble_and_membrane_proteins_zip/22345552Test

المؤلفون: Greta Bianchi, Marco Mangiagalli, Alberto Barbiroli, Sonia Longhi, Rita Grandori, Carlo Santambrogio, Stefania Brocca

المساهمون: Architecture et fonction des macromolécules biologiques (AFMB), Aix Marseille Université (AMU)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Bianchi, G, Mangiagalli, M, Barbiroli, A, Longhi, S, Grandori, R, Santambrogio, C, Brocca, S

المصدر: Biomolecules; Volume 12; Issue 4; Pages: 561
Biomolecules
Biomolecules, 2022, 12 (4), pp.561. ⟨10.3390/biom12040561⟩

مصطلحات موضوعية: hydrodynamic radiu, chargedresidue patterning, Proline, Protein Conformation, ellipsoid model, average shape of conformational ensemble, [SDV]Life Sciences [q-bio], solvent-accessible surface area, charge clustering, average shape of conformational ensembles, Biochemistry, Protein Structure, Secondary, M, Intrinsically Disordered Proteins, polyelectrolytes, charged-residue patterning, hydrodynamic radius, proline content, conformational compactness, conforma-tional compactne, Amino Acids, Molecular Biology, polyelectrolyte

وصف الملف: application/pdf; ELETTRONICO

الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::8037a81fc5cc08161df18d8475cfd5cbTest

المؤلفون: Zhiliang Yuan, Zhi Qu, Bo Duan, Tianyi Wang, Jiajun Xu, Bin Xia

المصدر: International Journal of Biological Macromolecules

مصطلحات موضوعية: Models, Molecular, Protein Conformation, alpha-Helical, Amyloid, Protein Folding, NMR, Nuclear magnetic resonance, MD, Molecular dynamics, animal structures, macromolecular substances, Molecular Dynamics Simulation, RMSF, Root mean square fluctuation, Biochemistry, Article, Polymerization, Protein Domains, Structural Biology, Disulfides, Molecular Biology, Coronavirus 3C Proteases, SASA, Solvent accessible surface area, SEC, Size-exclusion chromatography, 3D domain swapping, Amyloid fibrillation, fungi, Temperature, General Medicine, Amyloidosis, Recombinant Proteins, Kinetics, CD, Circular dichroism, Mutation, Dimerization, Mpro-C, C-terminal domain of SARS-CoV main protease

الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2bea496e0a0f54c5901fdf5c865e5409Test
https://pubmed.ncbi.nlm.nih.gov/34953805Test

المؤلفون: Gerhard Meissner, Daniel A. Pasek, Venkat R. Chirasani

المصدر: The Journal of Biological Chemistry

مصطلحات موضوعية: AMPPCP, phosphomethylphosphonic acid adenylate ester, Allosteric regulation, AMPPCP, Adenylate kinase, EC, excitation–contraction, Biochemistry, CSol, core α-solenoid, allosteric communications, MH, malignant hyperthermia, Adenosine Triphosphate, PDB, Protein Data Bank, Caffeine, medicine, ryanodine receptor, Humans, Binding site, skeletal muscle, Muscle, Skeletal, Molecular Biology, ATP/Caf, ATP and caffeine, RYR1, RyR1, ryanodine receptor type 1, calcium, Binding Sites, Chemistry, Ryanodine receptor, Endoplasmic reticulum, Skeletal muscle, SR, sarcoplasmic reticulum, Ryanodine Receptor Calcium Release Channel, Cell Biology, molecular dynamics simulations, SASA, solvent-accessible surface area, musculoskeletal system, RyR, ryanodine receptor, MD, molecular dynamics, CTD, C-terminal domain, sarcoplasmic reticulum, TaF, thumb and forefingers, ATP, medicine.anatomical_structure, HEK293 Cells, Biophysics, medicine.symptom, tissues, Caf, caffeine, Muscle contraction, Research Article, Protein Binding

الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::78404ea88e6d2d9f7b54181373815385Test
http://europepmc.org/articles/PMC8408527Test

المؤلفون: Shahid Khan, Muhammad Farhan Khalid, Safee Ullah Chaudhary, Maham Hamid

المصدر: International Journal of Molecular Sciences; Volume 23; Issue 21; Pages: 12771

مصطلحات موضوعية: Inorganic Chemistry, Organic Chemistry, General Medicine, Physical and Theoretical Chemistry, Molecular Biology, Spectroscopy, Catalysis, solvent accessible surface area (SASA), mass spectroscopy, protein phosphorylation, protection factor (PF), MATLAB toolbox, structured water, protein fold energetics, Computer Science Applications

وصف الملف: application/pdf

الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::808e208b8b43c7926c1fb53f6f38d75dTest
https://doi.org/10.3390/ijms232112771Test

المؤلفون: Frank Gondelaud, Fabien Chirot, Adam Liwo, Sylvie Ricard-Blum, Aurélien Le Fèvre, Bertrand Duclos, Adriana E. Miele, Mathilde Bouakil

المساهمون: Architecture et fonction des macromolécules biologiques (AFMB), Aix Marseille Université (AMU)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Spectrométrie des biomolécules et agrégats (SPECTROBIO), Institut Lumière Matière [Villeurbanne] (ILM), Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Centre National de la Recherche Scientifique (CNRS)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Centre National de la Recherche Scientifique (CNRS), Institut des Sciences Analytiques (ISA), Université de Lyon-Université de Lyon-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS), Biophysics of complex systems, Université de Lyon-Université de Lyon-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS)-Université Claude Bernard Lyon 1 (UCBL), ANABIO-MS - Analyse biomoléculaire par spectrométrie de masse - Biological Analysis by Mass Spectrometry, Catalyse Synthèse et Environnement (CASYEN), Institut de Chimie et Biochimie Moléculaires et Supramoléculaires (ICBMS), Université de Lyon-Université de Lyon-École Supérieure de Chimie Physique Électronique de Lyon (CPE)-Institut National des Sciences Appliquées de Lyon (INSA Lyon), Université de Lyon-Institut National des Sciences Appliquées (INSA)-Institut National des Sciences Appliquées (INSA)-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Institut National des Sciences Appliquées (INSA)-Institut National des Sciences Appliquées (INSA)-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS), University of Gdańsk (UG), Assemblages Supramoléculaires Péricellulaires et Extracellulaires (ASPE)

المصدر: Matrix Biology Plus
Matrix Biology Plus, 2021, 12 (3-4), pp.100081. ⟨10.1016/j.mbplus.2021.100081⟩
'Matrix Biology Plus ', vol: 12, pages: 100081-1-100081-19 (2021)
Matrix Biology Plus, Vol 12, Iss, Pp 100081-(2021)

مصطلحات موضوعية: IDP, GAG, glycosaminoglycan, random-coil, SDC, Biochemistry, TFE, trifluoroethanol, Syndecan 1, SAXS, small angle X-ray scattering, ESI-MS, electrospray ionization - mass spectrometry, Special Section on Molecular and Supramolecular structure of the extracellular matrix, Edited by Sylvie Ricard-Blum, solvent accessible surface area, Biology (General), collision cross section, CD, circular dichroism, ectodomain, SASA, SDS, TFE, trifluoroethanol, DLS, dynamic light scattering, GAG, [SDV.BBM.BS]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Structural Biology [q-bio.BM], biology, Chemistry, Extracellular matrix assembly, cell-matrix interactions, RC, random-coil, dynamic light scattering, size exclusion chromatography, electrospray ionization - ion mobility - mass spectrometry, SAXS, SEC, CSD, charge state distribution, CD, Ectodomain, sodium dodecyl sulfate, embryonic structures, conformations, ED, ectodomain, DTT, charge state distribution, animal structures, SDS, sodium dodecyl sulfate, Syndecans, Histology, QH301-705.5, PMG, pre-molten globule, DLS, small angle X-ray scattering, Integrin, Biophysics, MoRF, molecular recognition feature, MoRF, IDP, intrinsically disordered protein, Intrinsically disordered proteins, CSD, Growth factor receptor, SDC, syndecan, ESI-IM-MS, Cell surface receptor, glycosaminoglycan, Genetics, ESI-IM-MS, electrospray ionization - ion mobility - mass spectrometry, Cell adhesion, electrospray ionization - mass spectrometry, Molecular Biology, PAGE, polyacrylamide gel electrophoresis, CCS, collision cross section, DTT, dithiothreitol, SASA, solvent accessible surface area, SEC, size exclusion chromatography, molecular recognition feature, PMG, dithiothreitol, ESI-MS, Cell Biology, intrinsically disordered protein, ED, CCS, circular dichroism, PAGE, carbohydrates (lipids), biology.protein, pre-molten globule, polyacrylamide gel electrophoresis, RC, syndecan

وصف الملف: application/pdf

الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ffdf479eba653d09f2444a8e356f8047Test
https://doi.org/10.1016/j.mbplus.2021.100081Test

المؤلفون: Anthony J. Clark, Richard A. Friesner, Mengzhen Sun, Robert Abel, Lingle Wang, Christopher Negron, Kevin Hauser

المصدر: Journal of Molecular Biology

مصطلحات موضوعية: Databases, Factual, Entropy, HIV Antibodies, HIV Envelope Protein gp120, Molecular Dynamics Simulation, Ligands, Article, Biophysical Phenomena, Accessible surface area, Free energy perturbation, FEP, free energy perturbation, 03 medical and health sciences, 0302 clinical medicine, Protein structure, RMSE, root mean square error, Structural Biology, Drug Discovery, Side chain, antibodies, Protein Interaction Domains and Motifs, free energy perturbation, Molecular Biology, bNAb, broadly neutralizing antibody, SKEMPI, Structural database of Kinetics and Energetics of Mutant Protein Interactions, 030304 developmental biology, 0303 health sciences, Sequence, Chemistry, MM, molecular mechanics, fSASA, fractional solvent accessible surface area, Computational Biology, Proteins, Charge (physics), Hydrogen Bonding, Protein engineering, Small molecule, MD, molecular dynamics, Antibodies, Neutralizing, protein-protein binding, Mutation, mm-GB/SA, molecular mechanics generalized Born surface area, Biological system, 030217 neurology & neurosurgery, Protein Binding

الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a3e26e51a641a23ad2a8bbcca21e2142Test
http://europepmc.org/articles/PMC6453258Test

المؤلفون: Pier Luigi Martelli, Rita Casadio, Matteo Manfredi, Castrense Savojardo

المساهمون: Savojardo, Castrense, Manfredi, Matteo, Martelli, Pier Luigi, Casadio, Rita

المصدر: Frontiers in Molecular Biosciences
Frontiers in Molecular Biosciences, Vol 7 (2021)

مصطلحات موضوعية: 0301 basic medicine, pathogenic protein variation, prediction of solvent accessible surface, relative solvent accessibility, Context (language use), Computational biology, Biochemistry, Genetics and Molecular Biology (miscellaneous), Biochemistry, 03 medical and health sciences, chemistry.chemical_compound, Residue (chemistry), Protein structure, Sasa, protein variations, Molecular Biosciences, pathogenic protein variations, solvent accessible surface area, Tyrosine, lcsh:QH301-705.5, Molecular Biology, Original Research, 030102 biochemistry & molecular biology, biology, Chemistry, Tryptophan, biology.organism_classification, 030104 developmental biology, lcsh:Biology (General), protein variation, Solvent exposure, Cysteine

وصف الملف: ELETTRONICO

الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::aacb8042e33abe7b555ef2f7dc89b674Test
https://doi.org/10.3389/fmolb.2020.626363Test