المؤلفون: Almut Heinken, Dmitry A. Ravcheev, Federico Baldini, Laurent Heirendt, Ronan M. T. Fleming, Ines Thiele

المصدر: Microbiome, Vol 7, Iss 1, Pp 1-18 (2019)

مصطلحات موضوعية: Gut microbiome, Bile acids, Host-microbe interactions, Metabolism, Genome-scale reconstruction, Constraint-based modeling, Microbial ecology, QR100-130

وصف الملف: electronic resource

العلاقة: http://link.springer.com/article/10.1186/s40168-019-0689-3Test; https://doaj.org/toc/2049-2618Test

الوصول الحر: https://doaj.org/article/dcf614623d0b44eeaf0e6e3d45e6b03bTest

المؤلفون: Nicolas Sompairac, Jennifer Modamio, Emmanuel Barillot, Ronan M. T. Fleming, Andrei Zinovyev, Inna Kuperstein

المصدر: BMC Bioinformatics, Vol 20, Iss S4, Pp 1-14 (2019)

مصطلحات موضوعية: Signalling, Metabolism, Networks, Comprehensive map, Systems biology, Cancer, Computer applications to medicine. Medical informatics, R858-859.7, Biology (General), QH301-705.5

وصف الملف: electronic resource

العلاقة: http://link.springer.com/article/10.1186/s12859-019-2682-zTest; https://doaj.org/toc/1471-2105Test

الوصول الحر: https://doaj.org/article/69c337f7518147d289a3e882b455e2ffTest

المؤلفون: Fleming, Ronan M T^1,2,3 (AUTHOR) ronan.mt.fleming@gmail.com, Haraldsdottir, Hulda S² (AUTHOR), Minh, Le Hoai² (AUTHOR), Vuong, Phan Tu^2,4 (AUTHOR), Hankemeier, Thomas¹ (AUTHOR), Thiele, Ines³ (AUTHOR)

المصدر: Bioinformatics. Sep2023, Vol. 39 Issue 9, p1-11. 11p.

مصطلحات موضوعية: *POLYNOMIAL time algorithms, *CONTINUOUS functions, *CONVEX functions, *METABOLISM

المؤلفون: Hertel, Johannes, Harms, Amy C., Heinken, Almut, Baldini, Federico, Thinnes, Cyrille C, Glaab, Enrico, Vasco, Daniel A., Pietzner, Maik, Stewart, Isobel D., Wareham, Nicholas J., Langenberg, Claudia, Trenkwalder, Claudia, Krüger, Rejko, Hankemeier, Thomas, Fleming, Ronan M. T., Mollenhauer, Brit, Thiele, Ines

المساهمون: Fonds National de la Recherche Luxembourg, National Centre of Excellence in Research (NCER), European Research Council, Horizon 2020, Medical Research Council, Cancer Research UK

مصطلحات موضوعية: metabolism, Parkinson's disease, neurodegenerative disease, pathway, metabolomics, metagenomics, metabolic, modeling, taurine, bile acid metabolism, microbiome, transsulfuration pathway

العلاقة: Cell Reports; Hertel, Johannes, Harms, Amy C., Heinken, Almut, Baldini, Federico, Thinnes, Cyrille C., Glaab, Enrico, Vasco, Daniel A., Pietzner, Maik, Stewart, Isobel D.,Wareham, Nicholas J.,Langenberg, Claudia, Trenkwalder, Claudia, Krüger, Rejko, Hankemeier, Thomas, Fleming, Ronan M. T., Mollenhauer, Brit, Thiele, Ines. (2019). Integrated Analyses of Microbiome and Longitudinal Metabolome Data Reveal Microbial-Host Interactions on Sulfur Metabolism in Parkinson’s Disease. Cell Reports, 29(7), 1767-1777.e1768. doi: https://doi.org/10.1016/j.celrep.2019.10.035Test; http://hdl.handle.net/10379/15580Test

الإتاحة: https://doi.org/10.1016/j.celrep.2019.10.035Test
http://hdl.handle.net/10379/15580Test

المؤلفون: Sompairac, Nicolas, Modamio, Jennifer, Barillot, Emmanuel, Fleming, Ronan, M T, Zinovyev, Andrei, Kuperstein, Inna

المساهمون: Institut Curie Paris, Cancer et génome: Bioinformatique, biostatistiques et épidémiologie d'un système complexe, Mines Paris - PSL (École nationale supérieure des mines de Paris), Université Paris Sciences et Lettres (PSL)-Université Paris Sciences et Lettres (PSL)-Institut Curie Paris -Institut National de la Santé et de la Recherche Médicale (INSERM), Université Paris Sciences et Lettres (PSL), Luxembourg Centre For Systems Biomedicine (LCSB), University of Luxembourg Luxembourg, This work has been supported by the COLOSYS grant ANR-15-CMED-0001-04, provided by the Agence Nationale de la Recherche under the frame of ERACoSysMed-1, the ERA-Net for Systems Medicine in clinical research and medical practice and by PRECISE H2020 EU grant. This work received support from MASTODON program by CNRS (project APLIGOOGLE)., ANR-15-CMED-0001,COLOSYS,A systems approach to preventing drug resistance in colon cancer(2015), European Project: 668858,H2020,H2020-PHC-2015-two-stage,PrECISE(2016)

المصدر: ISSN: 1471-2105 ; BMC Bioinformatics ; https://inserm.hal.science/inserm-02289698Test ; BMC Bioinformatics, 2019, 20 (S4), pp.140. ⟨10.1186/s12859-019-2682-z⟩.

مصطلحات موضوعية: Comprehensive map, Data visualisation, Cancer, Multi-level omics data, Networks, Signalling, Systems biology, Metabolism, [SDV.BIBS]Life Sciences [q-bio]/Quantitative Methods [q-bio.QM], [SDV.CAN]Life Sciences [q-bio]/Cancer

العلاقة: info:eu-repo/semantics/altIdentifier/pmid/30999838; info:eu-repo/grantAgreement//668858/EU/PERSONALIZED ENGINE FOR CANCER INTEGRATIVE STUDY AND EVALUATION/PrECISE; inserm-02289698; https://inserm.hal.science/inserm-02289698Test; https://inserm.hal.science/inserm-02289698/documentTest; https://inserm.hal.science/inserm-02289698/file/s12859-019-2682-z.pdfTest; PUBMED: 30999838; PUBMEDCENTRAL: PMC6471697

الإتاحة: https://doi.org/10.1186/s12859-019-2682-zTest
https://inserm.hal.science/inserm-02289698Test
https://inserm.hal.science/inserm-02289698/documentTest
https://inserm.hal.science/inserm-02289698/file/s12859-019-2682-z.pdfTest

المؤلفون: Ronan M. T. Fleming, Maike K. Aurich, Almut Heinken, Ines Thiele, Laurent Heirendt, Johannes Hertel, Swagatika Sahoo

المصدر: Molecular Systems Biology, Vol 16, Iss 5, Pp n/a-n/a (2020)
Molecular Systems Biology, 16(5), e8982. WILEY
Molecular Systems Biology

مصطلحات موضوعية: Male, Proteomics, Medicine (General), QH301-705.5, flux balance analysis, microbiome, Metabolic network, Human metabolism, Computational biology, Biology, Article, General Biochemistry, Genetics and Molecular Biology, 03 medical and health sciences, R5-920, 0302 clinical medicine, Metabolomics, metabolic modeling, Humans, Computer Simulation, Microbiome, Biology (General), 030304 developmental biology, 0303 health sciences, Computational model, General Immunology and Microbiology, Systems Biology, Applied Mathematics, Computational Biology, Articles, Gut microbiome, Gastrointestinal Microbiome, Flux balance analysis, Metabolism, Gene Expression Regulation, Computational Theory and Mathematics, Organ Specificity, human metabolism, Metabolome, Female, Energy Metabolism, General Agricultural and Biological Sciences, Whole body, Algorithms, Biomarkers, Metabolic Networks and Pathways, 030217 neurology & neurosurgery, Information Systems

وصف الملف: application/pdf

الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c16363c42b2c5ae7ada249c7e089c6d2Test
https://doi.org/10.15252/msb.20198982Test

المؤلفون: Edda Klipp, Marco Antoniotti, Frank Bergmann, James C. Schaff, Peter D. Karp, Daniel Lucio, Kedar Nath Natarajan, Thomas M. Hamm, Leandro Watanabe, Henning Hermjakob, David Tolnay, John Wagner, Joerg Stelling, Alida Palmisano, Falk Schreiber, Yukiko Matsuoka, Harold F. Gómez, Huaiyu Mi, Carole J. Proctor, Ulrike Wittig, Neil Swainston, Jan Červený, Denis Thieffry, Piero Dalle Pezze, Julio Saez-Rodriguez, Maciej J. Swat, Bin Hu, Martina Kutmon, Thomas Pfau, Bas Teusink, Sarah M. Keating, Fedor A. Kolpakov, Andreas Dräger, Pedro Mendes, Martin Scharm, Emek Demir, Ioannis Xenarios, Christoph Flamm, Axel von Kamp, Darren J. Wilkinson, Nick Juty, Fengkai Zhang, Leonard A. Harris, Michael Schubert, Dagmar Waltemath, Lucian P. Smith, Steffen Klamt, Herbert M. Sauro, Ali Ebrahim, Wolfram Liebermeister, Christian Knüpfer, Nicolas Rodriguez, Tramy Nguyen, Naoki Tanimura, Christopher Cox, Stuart C. Sealfon, Nicholas Alexander Allen, Clemens Wrzodek, Bastian R. Angermann, Martin Meier-Schellersheim, Anna Zhukova, Jean-Baptiste Pettit, Hovakim Grabski, Devin P. Sullivan, Claudine Chaouiya, Michael L. Blinov, John Doyle, Ilya Kiselev, Roman Schulte, Alex Gutteridge, Mélanie Courtot, Eric Mjolsness, Finja Wrzodek, Rahuman S Malik-Sheriff, Ronan M. T. Fleming, Bruce E. Shapiro, Kimberly Begley, Leslie M. Loew, Colin S. Gillespie, Ibrahim Vazirabad, Michael Hucka, Akira Funahashi, Bernhard O. Palsson, Hamid Bolouri, Tomáš Helikar, Camille Laibe, William S. Denney, Chris T. Evelo, Florian Mittag, William S. Hlavacek, Ron Henkel, Harish Dharuri, Julien Dorier, Karthik Raman, Martina Fröhlich, Conor Lawless, Rainer Machné, Falko Krause, Damon Hachmeister, Matthias König, Clifford A. Shaffer, Benjamin D. Heavner, Douglas B. Kell, Jonathan R. Karr, Mihai Glont, Lukas Endler, Melanie I. Stefan, Robert Phair, Lu Li, Henning Schmidt, Dirk Drasdo, Johan Elf, Allyson L. Lister, Hiroaki Kitano, Richard R. Adams, Oliver A. Ruebenacker, Roland Keller, Sven Sahle, Ion I. Moraru, Gary D. Bader, Poul M. F. Nielsen, Johann M. Rohwer, Johannes Eichner, Daniel R. Hyduke, James R. Faeder, Stefan Hoops, Emanuel Gonçalves, Yuichiro Inagaki, Aurélien Naldi, Koichi Takahashi, Sylvain Soliman, Brett G. Olivier, Kieran Smallbone, Stuart L. Moodie, Pedro T. Monteiro, Chris J. Myers, Martin Golebiewski, Tomas Radivoyevitch, Jeremy Zucker, Hidde de Jong, Andrew Finney

المساهمون: Keating, S, Waltemath, D, König, M, Zhang, F, Dräger, A, Chaouiya, C, Bergmann, F, Finney, A, Gillespie, C, Helikar, T, Hoops, S, Malik-Sheriff, R, Moodie, S, Moraru, I, Myers, C, Naldi, A, Olivier, B, Sahle, S, Schaff, J, Smith, L, Swat, M, Thieffry, D, Watanabe, L, Wilkinson, D, Blinov, M, Begley, K, Faeder, J, Gómez, H, Hamm, T, Inagaki, Y, Liebermeister, W, Lister, A, Lucio, D, Mjolsness, E, Proctor, C, Raman, K, Rodriguez, N, Shaffer, C, Shapiro, B, Stelling, J, Swainston, N, Tanimura, N, Wagner, J, Meier-Schellersheim, M, Sauro, H, Palsson, B, Bolouri, H, Kitano, H, Funahashi, A, Hermjakob, H, Doyle, J, Hucka, M, Adams, R, Allen, N, Angermann, B, Antoniotti, M, Bader, G, Červený, J, Courtot, M, Cox, C, Dalle Pezze, P, Demir, E, Denney, W, Dharuri, H, Dorier, J, Drasdo, D, Ebrahim, A, Eichner, J, Elf, J, Endler, L, Evelo, C, Flamm, C, Fleming, R, Fröhlich, M, Glont, M, Gonçalves, E, Golebiewski, M, Grabski, H, Gutteridge, A, Hachmeister, D, Harris, L, Heavner, B, Henkel, R, Hlavacek, W, Hu, B, Hyduke, D, Jong, H, Juty, N, Karp, P, Karr, J, Kell, D, Keller, R, Kiselev, I, Klamt, S, Klipp, E, Knüpfer, C, Kolpakov, F, Krause, F, Kutmon, M, Laibe, C, Lawless, C, Li, L, Loew, L, Machne, R, Matsuoka, Y, Mendes, P, Mi, H, Mittag, F, Monteiro, P, Natarajan, K, Nielsen, P, Nguyen, T, Palmisano, A, Jean-Baptiste, P, Pfau, T, Phair, R, Radivoyevitch, T, Rohwer, J, Ruebenacker, O, Saez-Rodriguez, J, Scharm, M, Schmidt, H, Schreiber, F, Schubert, M, Schulte, R, Sealfon, S, Smallbone, K, Soliman, S, Stefan, M, Sullivan, D, Takahashi, K, Teusink, B, Tolnay, D, Vazirabad, I, Kamp, A, Wittig, U, Wrzodek, C, Wrzodek, F, Xenarios, I, Zhukova, A, Zucker, J, European Bioinformatics Institute [Hinxton] (EMBL-EBI), EMBL Heidelberg, Heidelberg University Hospital [Heidelberg], Swiss Institute of Bioinformatics [Lausanne] (SIB), Université de Lausanne = University of Lausanne (UNIL), European Molecular Biology Laboratory (EMBL), University of Connecticut (UCONN), National Institutes of Health [Bethesda] (NIH), Chercheur indépendant, Amazon Web Services [Seattle] (AWS), Università degli Studi di Milano-Bicocca = University of Milano-Bicocca (UNIMIB), University of Toronto, Masaryk University [Brno] (MUNI), Terry Fox Laboratory, BC Cancer Agency (BCCRC)-British Columbia Cancer Agency Research Centre, The University of Tennessee [Knoxville], The Babraham Institute [Cambridge, UK], Oregon Health and Science University [Portland] (OHSU), Human Predictions LLC, Illumina, Swiss-Prot Group, Swiss Institute of Bioinformatics [Genève] (SIB), Modelling and Analysis for Medical and Biological Applications (MAMBA), Inria de Paris, Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche en Informatique et en Automatique (Inria)-Laboratoire Jacques-Louis Lions (LJLL (UMR_7598)), Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université Paris Cité (UPCité)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université Paris Cité (UPCité), University of California [San Diego] (UC San Diego), University of California (UC), Center for Bioinformatics (ZBIT), Eberhard Karls Universität Tübingen = Eberhard Karls University of Tuebingen, Uppsala University, Institut für Populationsgenetik [Vienna], Veterinärmedizinische Universität Wien, Maastricht University [Maastricht], Alpen-Adria-Universität Klagenfurt [Klagenfurt, Austria], Medizinische Universität Wien = Medical University of Vienna, German Cancer Research Center - Deutsches Krebsforschungszentrum [Heidelberg] (DKFZ), Heidelberg Institute for Theoretical Studies (HITS ), Russian-Armenian University (RAU), GlaxoSmithKline [Stevenage, UK] (GSK), GlaxoSmithKline [Headquarters, London, UK] (GSK), Microsoft Technology Licensing (MTL), Microsoft Corporation [Redmond, Wash.], Vanderbilt University School of Medicine [Nashville], University of Washington [Seattle], University of Rostock, Los Alamos National Laboratory (LANL), Lorentz Institute, Universiteit Leiden, Tegmine Therapeutics, Modeling, simulation, measurement, and control of bacterial regulatory networks (IBIS), Laboratoire Adaptation et pathogénie des micro-organismes [Grenoble] (LAPM), Université Joseph Fourier - Grenoble 1 (UJF)-Centre National de la Recherche Scientifique (CNRS)-Université Joseph Fourier - Grenoble 1 (UJF)-Centre National de la Recherche Scientifique (CNRS)-Inria Grenoble - Rhône-Alpes, Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche en Informatique et en Automatique (Inria)-Institut Jean Roget, SRI International [Menlo Park] (SRI), Icahn School of Medicine at Mount Sinai [New York] (MSSM), University of Liverpool, Universitätsklinikum Tübingen - University Hospital of Tübingen, Institute of Information and Computational Technologies (IICT), Max Planck Institute for Dynamics of Complex Technical Systems, Max-Planck-Gesellschaft, Max-Planck-Institut für Molekulare Genetik (MPIMG), Friedrich-Schiller-Universität = Friedrich Schiller University Jena [Jena, Germany], Humboldt University Of Berlin, Newcastle University [Newcastle], École polytechnique (X), Heinrich Heine Universität Düsseldorf = Heinrich Heine University [Düsseldorf], The Systems Biology Institute [Tokyo] (SBI), Centro de Quimica Estrutural (CQE), Instituto Superior Técnico, Universidade Técnica de Lisboa (IST), University of Southern California (USC), Instituto Gulbenkian de Ciência [Oeiras] (IGC), Fundação Calouste Gulbenkian, University of Southern Denmark (SDU), University of Auckland [Auckland], University of Utah, Virginia Tech [Blacksburg], University of Luxembourg [Luxembourg], Integrative Bioinformatics Inc [Mountain View], Cleveland Clinic, Stellenbosch University, Broad Institute of MIT and Harvard (BROAD INSTITUTE), Harvard Medical School [Boston] (HMS)-Massachusetts Institute of Technology (MIT)-Massachusetts General Hospital [Boston], Universität Heidelberg [Heidelberg] = Heidelberg University, Leibniz Institute of Plant Genetics and Crop Plant Research [Gatersleben] (IPK-Gatersleben), Laboratoire de Biologie du Développement de Villefranche sur mer (LBDV), Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Institut de la Mer de Villefranche (IMEV), Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS), Mount Sinai School of Medicine, Department of Psychiatry-Icahn School of Medicine at Mount Sinai [New York] (MSSM), University of Manchester [Manchester], Computational systems biology and optimization (Lifeware), Inria Saclay - Ile de France, Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche en Informatique et en Automatique (Inria), California Institute of Technology (CALTECH), Encodia Inc [San Diego], Shinshu University [Nagano], University of Amsterdam [Amsterdam] (UvA), Versiti Blood Center of Wisconsin, Greifswald University Hospital, Bioinformatique évolutive - Evolutionary Bioinformatics, Institut Pasteur [Paris] (IP)-Centre National de la Recherche Scientifique (CNRS), Pacific Northwest National Laboratory (PNNL), National Institute of Allergy and Infectious Diseases [Bethesda] (NIAID-NIH), Department of Bioengineering, University of California (UC)-University of California (UC), ANSYS, Virginia Polytechnic Institute and State University [Blacksburg], Eight Pillars Ltd, Center for Integrative Genomics - Institute of Bioinformatics, Génopode (CIG), Université de Lausanne = University of Lausanne (UNIL)-Université de Lausanne = University of Lausanne (UNIL), Universität Heidelberg, Bioquant, Applied Biomathematics [New York], SimCYP Ltd, Institut de biologie de l'ENS Paris (IBENS), Département de Biologie - ENS Paris, École normale supérieure - Paris (ENS-PSL), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-École normale supérieure - Paris (ENS-PSL), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS), University of Utah School of Medicine [Salt Lake City], University of Pittsburgh School of Medicine, Pennsylvania Commonwealth System of Higher Education (PCSHE), Eidgenössische Technische Hochschule - Swiss Federal Institute of Technology [Zürich] (ETH Zürich), Mizuho Information and Research Institute, Mathématiques et Informatique Appliquées du Génome à l'Environnement [Jouy-En-Josas] (MaIAGE), Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), University of Oxford, Computer Science (North Carolina State University), North Carolina State University [Raleigh] (NC State), University of North Carolina System (UNC)-University of North Carolina System (UNC), University of California [Irvine] (UC Irvine), Indian Institute of Technology Madras (IIT Madras), California State University [Northridge] (CSUN), Biotechnology and Biological Sciences Research Council (BBSRC), IBM Research [Melbourne], Benaroya Research Institute [Seattle] (BRI), Okinawa Institute of Science and Technology Graduate University, Keio University, Department of Computing and Mathematical sciences, members, SBML Level 3 Community, Université de Lausanne (UNIL), Università degli Studi di Milano-Bicocca [Milano] (UNIMIB), Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université de Paris (UP)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université de Paris (UP), University of California, Universiteit Leiden [Leiden], Centre National de la Recherche Scientifique (CNRS)-Université Joseph Fourier - Grenoble 1 (UJF)-Centre National de la Recherche Scientifique (CNRS)-Université Joseph Fourier - Grenoble 1 (UJF)-Inria Grenoble - Rhône-Alpes, Humboldt University of Berlin, Universität Heidelberg [Heidelberg], Institut Pasteur [Paris]-Centre National de la Recherche Scientifique (CNRS), Humboldt-Universität zu Berlin, University of California-University of California, Université de Lausanne (UNIL)-Université de Lausanne (UNIL), Centre National de la Recherche Scientifique (CNRS)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Département de Biologie - ENS Paris, École normale supérieure - Paris (ENS Paris), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Centre National de la Recherche Scientifique (CNRS)-Institut National de la Santé et de la Recherche Médicale (INSERM)-École normale supérieure - Paris (ENS Paris), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Centre National de la Recherche Scientifique (CNRS)-Institut National de la Santé et de la Recherche Médicale (INSERM), University of Oxford [Oxford], University of California [Irvine] (UCI), Biotechnology and Biological Sciences Research Council, Computer Science, Institut de biologie de l'ENS Paris (UMR 8197/1024) (IBENS), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-École normale supérieure - Paris (ENS Paris)

المصدر: Molecular Systems Biology
Molecular Systems Biology, 2020, 16 (8), pp.1-21. ⟨10.15252/msb.20199110⟩
Molecular systems biology, vol 16, iss 8
Molecular Systems Biology, EMBO Press, 2020, 16 (8), pp.1-21. ⟨10.15252/msb.20199110⟩
Keating, S M, Waltemath, D, König, M, Zhang, F, Dräger, A, Chaouiya, C, Bergmann, F T, Finney, A, Gillespie, C S, Helikar, T, Hoops, S, Malik-Sheriff, R S, Moodie, S L, Moraru, I I, Myers, C J, Naldi, A, Olivier, B G, Sahle, S, Schaff, J C, Smith, L P, Swat, M J, Thieffry, D, Watanabe, L, Wilkinson, D J, Blinov, M L, Begley, K, Faeder, J R, Gómez, H F, Hamm, T M, Inagaki, Y, Liebermeister, W, Lister, A L, Lucio, D, Mjolsness, E, Proctor, C J, Raman, K, Rodriguez, N, Shaffer, C A, Shapiro, B E, Stelling, J, Swainston, N, Tanimura, N, Wagner, J, Meier-Schellersheim, M, Sauro, H M, Palsson, B, Bolouri, H, Kitano, H, Funahashi, A, Hermjakob, H, Doyle, J C, Hucka, M, Adams, R R, Allen, N A, Angermann, B R, Antoniotti, M, Bader, G D, Červený, J, Courtot, M, Cox, C D, Dalle Pezze, P, Demir, E, Denney, W S, Dharuri, H, Dorier, J, Drasdo, D, Ebrahim, A, Eichner, J, Elf, J, Endler, L, Evelo, C T, Flamm, C, Fleming, R M T, Fröhlich, M, Glont, M, Gonçalves, E, Golebiewski, M, Grabski, H, Gutteridge, A, Hachmeister, D, Harris, L A, Heavner, B D, Henkel, R, Hlavacek, W S, Hu, B, Hyduke, D R, de Jong, H, Juty, N, Karp, P D, Karr, J R, Kell, D B, Keller, R, Kiselev, I, Klamt, S, Klipp, E, Knüpfer, C, Kolpakov, F, Krause, F, Kutmon, M, Laibe, C, Lawless, C, Li, L, Loew, L M, Machne, R, Matsuoka, Y, Mendes, P, Mi, H, Mittag, F, Monteiro, P T, Natarajan, K N, Nielsen, P M F, Nguyen, T, Palmisano, A, Pettit, J B, Pfau, T, Phair, R D, Radivoyevitch, T, Rohwer, J M, Ruebenacker, O A, Saez-Rodriguez, J, Scharm, M, Schmidt, H, Schreiber, F, Schubert, M, Schulte, R, Sealfon, S C, Smallbone, K, Soliman, S, Stefan, M I, Sullivan, D P, Takahashi, K, Teusink, B, Tolnay, D, Vazirabad, I, von Kamp, A, Wittig, U, Wrzodek, C, Wrzodek, F, Xenarios, I, Zhukova, A & Zucker, J 2020, ' SBML Level 3 : an extensible format for the exchange and reuse of biological models ', Molecular Systems Biology, vol. 16, no. 8, e9110, pp. 1-21 . https://doi.org/10.15252/msb.20199110Test
MOLECULAR SYSTEMS BIOLOGY
Molecular Systems Biology, Vol 16, Iss 8, Pp n/a-n/a (2020)

مصطلحات موضوعية: computational modeling, Medicine (General), Markup language, [SDV.BIO]Life Sciences [q-bio]/Biotechnology, INFORMATION, Interoperability, interoperability, Review, [SDV.BC.BC]Life Sciences [q-bio]/Cellular Biology/Subcellular Processes [q-bio.SC], ANNOTATION, 0302 clinical medicine, Software, file forma, Models, Biology (General), 0303 health sciences, Computational model, Applied Mathematics, Systems Biology, systems biology, File format, 3. Good health, Networking and Information Technology R&D, Networking and Information Technology R&D (NITRD), Computational Theory and Mathematics, SIMULATION, General Agricultural and Biological Sciences, STANDARDS, REPOSITORY, Information Systems, QH301-705.5, Bioinformatics, Systems biology, Software ecosystem, Reviews, Bioengineering, Methods & Resources, Biology, MARKUP LANGUAGE, Models, Biological, SBML Level 3 Community members, General Biochemistry, Genetics and Molecular Biology, 03 medical and health sciences, R5-920, Animals, Humans, SBML, reproducibility, 030304 developmental biology, ENVIRONMENT, General Immunology and Microbiology, file format, business.industry, Computational Biology, Biological, ONTOLOGY, Metabolism, Logistic Models, Biochemistry and Cell Biology, Other Biological Sciences, Software engineering, business, 030217 neurology & neurosurgery

وصف الملف: application/pdf

الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::aa48af775634bdfd1c248e236b20ef61Test
http://hdl.handle.net/10281/282956Test

المؤلفون: Dmitry A. Ravcheev, Almut Heinken, Ines Thiele, Ronan M. T. Fleming, Laurent Heirendt, Federico Baldini

المصدر: Microbiome
Microbiome, Vol 7, Iss 1, Pp 1-18 (2019)
Microbiome. London, United Kingdom: BioMed Central (2019).

مصطلحات موضوعية: Microbiology (medical), Microbiologie [F11] [Sciences du vivant], Constraint-based modeling, medicine.drug_class, In silico, Systems biology, Multidisciplinary, general & others [F99] [Life sciences], Computational biology, Biology, digestive system, Microbiology, lcsh:Microbial ecology, Bile Acids and Salts, Multidisciplinaire, généralités & autres [F99] [Sciences du vivant], 03 medical and health sciences, Microbial ecology, Personalized modeling, medicine, Humans, Microbiology [F11] [Life sciences], Microbiome, 030304 developmental biology, 2. Zero hunger, Gut microbiome, 0303 health sciences, Bile acid, 030306 microbiology, Systems Biology, Host-microbe interactions, Methodology, Genomics, Metabolism, Inflammatory Bowel Diseases, Lipid Metabolism, Genome-scale reconstruction, Bile acids, Gastrointestinal Microbiome, Flux balance analysis, Metagenomics, Host-Pathogen Interactions, lcsh:QR100-130

الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a7089d057f6d50a8cd8468519f7a728fTest
https://doi.org/10.1186/s40168-019-0689-3Test

المؤلفون: Isobel D. Stewart, Maik Pietzner, Almut Heinken, Enrico Glaab, Ines Thiele, Claudia Langenberg, Thomas Hankemeier, Amy C. Harms, Brit Mollenhauer, Federico Baldini, Daniel A. Vasco, Nicholas J. Wareham, Ronan M. T. Fleming, Rejko Krüger, Johannes Hertel, Claudia Trenkwalder, Cyrille C. Thinnes

المساهمون: Fonds National de la Recherche Luxembourg, National Centre of Excellence in Research (NCER), European Research Council, Horizon 2020, Medical Research Council, Cancer Research UK, Pietzner, Maik [0000-0003-3437-9963], Wareham, Nicholas [0000-0003-1422-2993], Langenberg, Claudia [0000-0002-5017-7344], Apollo - University of Cambridge Repository, Fonds National de la Recherche - FnR [sponsor], European Research Council [sponsor], Medical Research Council [sponsor], Cambridge Lipidomics Biomarker Research Initiative [sponsor], Luxembourg Centre for Systems Biomedicine (LCSB) [research center]

المصدر: Cell Reports, Vol 29, Iss 7, Pp 1767-1777.e8 (2019)
Cell Reports, 29(7), 1767-1777. CELL PRESS
Cell Reports
info:eu-repo/grantAgreement/EC/H2020/757922

مصطلحات موضوعية: computational modeling, Male, 0301 basic medicine, analysis, Biotechnologie [F06] [Sciences du vivant], Neurology [D14] [Human health sciences], Parkinson's disease, gut microbiome, microbiome, Multidisciplinaire, généralités & autres [F99] [Sciences du vivant], neurodegenerative disease, 0302 clinical medicine, metabolic modeling, Biotechnology [F06] [Life sciences], Metabolic modeling, Longitudinal Studies, lcsh:QH301-705.5, Multidisciplinary, general & others [D99] [Human health sciences], media_common, European research, Parkinson Disease, Middle Aged, Medical research, metabolomics, 3. Good health, statistics, Female, taurine, Taurine metabolism, Multidisciplinaire, généralités & autres [D99] [Sciences de la santé humaine], Library science, Multidisciplinary, general & others [F99] [Life sciences], Article, General Biochemistry, Genetics and Molecular Biology, 03 medical and health sciences, metabolic, Political science, bile acid metabolism, metabolism, metagenomics, taurine metabolism, transsulfuration pathway, Humans, media_common.cataloged_instance, Microbiome, European union, Aged, Neurologie [D14] [Sciences de la santé humaine], pathway, modeling, prediction, Gut microbiome, Gastrointestinal Microbiome, 030104 developmental biology, lcsh:Biology (General), constraint-based modeling, Sulfur, 030217 neurology & neurosurgery, Microbial host

وصف الملف: application/pdf

الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::67abe452966f8e7f0a2a912d8838e6a3Test
https://doi.org/10.1016/j.celrep.2019.10.035Test

المؤلفون: Emmanuel Barillot, Nicolas Sompairac, Inna Kuperstein, Andrei Zinovyev, Ronan M. T. Fleming, Jennifer Modamio

مصطلحات موضوعية: 0303 health sciences, Computer science, business.industry, Systems biology, Network mapping, Human metabolism, Metabolic network, Metabolism, Computational biology, Visualization, Omics data, Transcriptome, 03 medical and health sciences, Metabolic pathway, 0302 clinical medicine, Data visualization, Signalling, 030220 oncology & carcinogenesis, business, 030304 developmental biology

الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1352213f09fb7af29631b3b57c11e348Test
https://doi.org/10.1101/274902Test