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1دورية أكاديمية
المؤلفون: Bonnie V. Dougherty, Connor J. Moore, Kristopher D. Rawls, Matthew L. Jenior, Bryan Chun, Sarbajeet Nagdas, Jeffrey J. Saucerman, Glynis L. Kolling, Anders Wallqvist, Jason A. Papin
مصطلحات موضوعية: Biochemistry, Medicine, Cell Biology, Genetics, Physiology, Pharmacology, Cancer, Hematology, Virology, Computational Biology, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, Information Systems not elsewhere classified, term side effects, standard gene enrichment, metabolomics approaches identify, commonly affected pathways, metabolomics data characterizing, present paired transcriptomics, div >< p, unique metabolic reactions, metabolomics data integrated, paired data, metabolic reactions, metabolic demand, vitro <, rna synthesis, revealed long, phospholipid metabolism, p53 pathway
الإتاحة: https://doi.org/10.1371/journal.pcbi.1011919.s010Test
https://figshare.com/articles/journal_contribution/All_supplementary_information_included_in_one_document_including_figures_tables_and_descriptions_/25320006Test -
2دورية أكاديمية
المؤلفون: David J. Degnan (14351495), Kelly G. Stratton (4388506), Rachel Richardson (458168), Daniel Claborne (6269396), Evan A. Martin (10728369), Nathan A. Johnson (6910028), Damon Leach (14351498), Bobbie-Jo M. Webb-Robertson (46423), Lisa M. Bramer (1473334)
مصطلحات موضوعية: Biochemistry, Genetics, Physiology, Immunology, Hematology, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, streamlined statistical purposes, present relevant examples, new feature benefits, made progress toward, labeled ), metabolomic, https :// github, transcriptomic data analyses, mass spectrometry data, lipidomic data sets, multiple omics datatypes, paired data, omics community, voom <, trelliscopejs <, trelliscopejs ), trellis displays, specific characteristics, r packages, quick creation, quality control, initial release, growing userbase
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3صورة
المؤلفون: Bonnie V. Dougherty, Connor J. Moore, Kristopher D. Rawls, Matthew L. Jenior, Bryan Chun, Sarbajeet Nagdas, Jeffrey J. Saucerman, Glynis L. Kolling, Anders Wallqvist, Jason A. Papin
مصطلحات موضوعية: Biochemistry, Medicine, Cell Biology, Genetics, Physiology, Pharmacology, Cancer, Hematology, Virology, Computational Biology, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, Information Systems not elsewhere classified, term side effects, standard gene enrichment, metabolomics approaches identify, commonly affected pathways, metabolomics data characterizing, present paired transcriptomics, div >< p, unique metabolic reactions, metabolomics data integrated, paired data, metabolic reactions, metabolic demand, vitro <, rna synthesis, revealed long, phospholipid metabolism, p53 pathway
الإتاحة: https://doi.org/10.1371/journal.pcbi.1011919.s002Test
https://figshare.com/articles/figure/Additional_PCA_plots_demonstrate_A_separation_of_treatment_vs_control_groups_and_B_the_top_10_metabolites_separating_the_PCA_of_the_scaled_metabolite_abundances_/25319979Test -
4صورة
المؤلفون: Bonnie V. Dougherty, Connor J. Moore, Kristopher D. Rawls, Matthew L. Jenior, Bryan Chun, Sarbajeet Nagdas, Jeffrey J. Saucerman, Glynis L. Kolling, Anders Wallqvist, Jason A. Papin
مصطلحات موضوعية: Biochemistry, Medicine, Cell Biology, Genetics, Physiology, Pharmacology, Cancer, Hematology, Virology, Computational Biology, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, Information Systems not elsewhere classified, term side effects, standard gene enrichment, metabolomics approaches identify, commonly affected pathways, metabolomics data characterizing, present paired transcriptomics, div >< p, unique metabolic reactions, metabolomics data integrated, paired data, metabolic reactions, metabolic demand, vitro <, rna synthesis, revealed long, phospholipid metabolism, p53 pathway
الإتاحة: https://doi.org/10.1371/journal.pcbi.1011919.s001Test
https://figshare.com/articles/figure/Cell_viability_and_cell_death_measures_following_6_hours_of_exposure_to_compounds_/25319976Test -
5صورة
المؤلفون: Bonnie V. Dougherty, Connor J. Moore, Kristopher D. Rawls, Matthew L. Jenior, Bryan Chun, Sarbajeet Nagdas, Jeffrey J. Saucerman, Glynis L. Kolling, Anders Wallqvist, Jason A. Papin
مصطلحات موضوعية: Biochemistry, Medicine, Cell Biology, Genetics, Physiology, Pharmacology, Cancer, Hematology, Virology, Computational Biology, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, Information Systems not elsewhere classified, term side effects, standard gene enrichment, metabolomics approaches identify, commonly affected pathways, metabolomics data characterizing, present paired transcriptomics, div >< p, unique metabolic reactions, metabolomics data integrated, paired data, metabolic reactions, metabolic demand, vitro <, rna synthesis, revealed long, phospholipid metabolism, p53 pathway
الإتاحة: https://doi.org/10.1371/journal.pcbi.1011919.s005Test
https://figshare.com/articles/figure/Distribution_of_random_task_scores_for_the_metabolic_tasks_for_arginine_to_nitric_oxide_and_ROS_detoxification_demonstrate_the_underlying_distribution_of_DEGs_/25319988Test -
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المؤلفون: Bonnie V. Dougherty, Connor J. Moore, Kristopher D. Rawls, Matthew L. Jenior, Bryan Chun, Sarbajeet Nagdas, Jeffrey J. Saucerman, Glynis L. Kolling, Anders Wallqvist, Jason A. Papin
مصطلحات موضوعية: Biochemistry, Medicine, Cell Biology, Genetics, Physiology, Pharmacology, Cancer, Hematology, Virology, Computational Biology, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, Information Systems not elsewhere classified, term side effects, standard gene enrichment, metabolomics approaches identify, commonly affected pathways, metabolomics data characterizing, present paired transcriptomics, div >< p, unique metabolic reactions, metabolomics data integrated, paired data, metabolic reactions, metabolic demand, vitro <, rna synthesis, revealed long, phospholipid metabolism, p53 pathway
الإتاحة: https://doi.org/10.1371/journal.pcbi.1011919.s007Test
https://figshare.com/articles/dataset/Differential_expressed_genes_separated_by_treatment_time_point_and_direction_of_change_/25319997Test -
7صورة
المؤلفون: Bonnie V. Dougherty, Connor J. Moore, Kristopher D. Rawls, Matthew L. Jenior, Bryan Chun, Sarbajeet Nagdas, Jeffrey J. Saucerman, Glynis L. Kolling, Anders Wallqvist, Jason A. Papin
مصطلحات موضوعية: Biochemistry, Medicine, Cell Biology, Genetics, Physiology, Pharmacology, Cancer, Hematology, Virology, Computational Biology, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, Information Systems not elsewhere classified, term side effects, standard gene enrichment, metabolomics approaches identify, commonly affected pathways, metabolomics data characterizing, present paired transcriptomics, div >< p, unique metabolic reactions, metabolomics data integrated, paired data, metabolic reactions, metabolic demand, vitro <, rna synthesis, revealed long, phospholipid metabolism, p53 pathway
الإتاحة: https://doi.org/10.1371/journal.pcbi.1011919.s003Test
https://figshare.com/articles/figure/Metabolomics_data_shows_differential_consumption_and_production_of_metabolites_between_blank_media_and_control_treated_samples_/25319982Test -
8صورة
المؤلفون: Bonnie V. Dougherty, Connor J. Moore, Kristopher D. Rawls, Matthew L. Jenior, Bryan Chun, Sarbajeet Nagdas, Jeffrey J. Saucerman, Glynis L. Kolling, Anders Wallqvist, Jason A. Papin
مصطلحات موضوعية: Biochemistry, Medicine, Cell Biology, Genetics, Physiology, Pharmacology, Cancer, Hematology, Virology, Computational Biology, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, Information Systems not elsewhere classified, term side effects, standard gene enrichment, metabolomics approaches identify, commonly affected pathways, metabolomics data characterizing, present paired transcriptomics, div >< p, unique metabolic reactions, metabolomics data integrated, paired data, metabolic reactions, metabolic demand, vitro <, rna synthesis, revealed long, phospholipid metabolism, p53 pathway
الإتاحة: https://doi.org/10.1371/journal.pcbi.1011919.s004Test
https://figshare.com/articles/figure/The_rat-specific_heart_model_captures_changes_in_DEGs_and_metabolomics_/25319985Test -
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المؤلفون: Bonnie V. Dougherty, Connor J. Moore, Kristopher D. Rawls, Matthew L. Jenior, Bryan Chun, Sarbajeet Nagdas, Jeffrey J. Saucerman, Glynis L. Kolling, Anders Wallqvist, Jason A. Papin
مصطلحات موضوعية: Biochemistry, Medicine, Cell Biology, Genetics, Physiology, Pharmacology, Cancer, Hematology, Virology, Computational Biology, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, Information Systems not elsewhere classified, term side effects, standard gene enrichment, metabolomics approaches identify, commonly affected pathways, metabolomics data characterizing, present paired transcriptomics, div >< p, unique metabolic reactions, metabolomics data integrated, paired data, metabolic reactions, metabolic demand, vitro <, rna synthesis, revealed long, phospholipid metabolism, p53 pathway
الإتاحة: https://doi.org/10.1371/journal.pcbi.1011919.s008Test
https://figshare.com/articles/dataset/RIPTiDe_models_after_integration_with_metabolomics_and_transcriptomics_data_/25320000Test -
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المؤلفون: Bonnie V. Dougherty, Connor J. Moore, Kristopher D. Rawls, Matthew L. Jenior, Bryan Chun, Sarbajeet Nagdas, Jeffrey J. Saucerman, Glynis L. Kolling, Anders Wallqvist, Jason A. Papin
مصطلحات موضوعية: Biochemistry, Medicine, Cell Biology, Genetics, Physiology, Pharmacology, Cancer, Hematology, Virology, Computational Biology, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, Information Systems not elsewhere classified, term side effects, standard gene enrichment, metabolomics approaches identify, commonly affected pathways, metabolomics data characterizing, present paired transcriptomics, div >< p, unique metabolic reactions, metabolomics data integrated, paired data, metabolic reactions, metabolic demand, vitro <, rna synthesis, revealed long, phospholipid metabolism, p53 pathway
الإتاحة: https://doi.org/10.1371/journal.pcbi.1011919.s009Test
https://figshare.com/articles/dataset/Rat-specific_metabolic_reactions_mapped_from_the_human_i_iCardio_i_model_or_manually_added_from_i_iRno_i_to_ensure_metabolic_function_/25320003Test