المؤلفون: Ralf Zimmer, Christian Weber, Markus Joppich

المصدر: Thrombosis and haemostasis. 119(8)

مصطلحات موضوعية: 0301 basic medicine, Databases, Factual, Gene regulatory network, Context (language use), Disease, Computational biology, 030204 cardiovascular system & hematology, Biology, Monocytes, 03 medical and health sciences, Mice, 0302 clinical medicine, microRNA, Animals, Data Mining, Humans, Gene Regulatory Networks, Platelet activation, Gene, Chemokine CCL2, Cell Proliferation, Regulation of gene expression, Inflammation, Gene Expression Profiling, Macrophages, Endothelial Cells, Hematology, Atherosclerosis, Platelet Activation, Gene expression profiling, MicroRNAs, 030104 developmental biology, Gene Expression Regulation, Disease Progression, Chemokines

الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::53c37e09a3a8dcac724adec66c83d7a8Test
https://pubmed.ncbi.nlm.nih.gov/31378854Test

المؤلفون: Robert Küffner, Pegah Tavakkolkhah, Ralf Zimmer

المصدر: PLoS ONE
PLoS ONE, Vol 13, Iss 8, p e0201382 (2018)

مصطلحات موضوعية: 0301 basic medicine, Computer science, Gene regulatory network, Gene Identification and Analysis, Inference, lcsh:Medicine, Gene Expression, Yeast and Fungal Models, Genetic Networks, Biochemistry, Mathematical and Statistical Techniques, Nucleic Acids, Databases, Genetic, Gene Regulatory Networks, lcsh:Science, Regulation of gene expression, Multidisciplinary, Eukaryota, Categorization, Experimental Organism Systems, Three way, Physical Sciences, Saccharomyces Cerevisiae, Analysis of variance, Network Analysis, Statistics (Mathematics), Research Article, Computer and Information Sciences, Network Motifs, Research and Analysis Methods, 03 medical and health sciences, Saccharomyces, Model Organisms, Gene Types, DNA-binding proteins, Genetics, Gene Regulation, Statistical Methods, Operons, Transcription factor, Analysis of Variance, Models, Genetic, business.industry, lcsh:R, Organisms, Fungi, Biology and Life Sciences, Proteins, Pattern recognition, DNA, Yeast, Regulatory Proteins, 030104 developmental biology, Regulon, Gene Expression Regulation, Regulator Genes, lcsh:Q, Artificial intelligence, business, Biological network, Mathematics, Transcription Factors

الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c3161974d29b74b20dc4d39e7187d1a6Test
http://europepmc.org/articles/PMC6078297Test

المؤلفون: Robert Küffner, Ludwig Geistlinger, Ralf Zimmer, Stefan Altmann, Tobias Petri

المصدر: Bioinformatics 31, 2836-2843 (2015)

مصطلحات موضوعية: Statistics and Probability, False discovery rate, Saccharomyces cerevisiae Proteins, Computer science, Gene regulatory network, Inference, Machine learning, computer.software_genre, Biochemistry, Machine Learning, Gene Expression Regulation, Fungal, False Positive Reactions, Gene Regulatory Networks, Spurious relationship, Molecular Biology, Oligonucleotide Array Sequence Analysis, business.industry, Gene Expression Profiling, Systems Biology, Expression (mathematics), Computer Science Applications, Computational Mathematics, Computational Theory and Mathematics, Data mining, Artificial intelligence, business, computer, Algorithms, Software, Signal Transduction

وصف الملف: application/pdf

الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::8965f636fd559ac5c9468e9465f2cecbTest
https://doi.org/10.1093/bioinformatics/btv215Test

المؤلفون: Daniel, Marbach, Costello, James C., Robert, Küffner, Vega, Nicole M., Prill, Robert J., Camacho, Diogo M., Allison, Kyle R., Andrej, Aderhold, Richard, Bonneau, Yukun, Chen, Collins, James J., Francesca, Cordero, Martin, Crane, Frank, Dondelinger, Mathias, Drton, Roberto, Esposito, Rina, Foygel, Alberto de la Fuente, Jan, Gertheiss, Pierre, Geurts, Alex, Greenfield, Marco, Grzegorczyk, Anne Claire Haury, Benjamin, Holmes, Torsten, Hothorn, Dirk, Husmeier, Vân Anh Huynh Thu, Alexandre, Irrthum, Manolis, Kellis, Guy, Karlebach, Sophie, Lèbre, Vincenzo De Leo, Aviv, Madar, Subramani, Mani, Fantine, Mordelet, Harry, Ostrer, Zhengyu, Ouyang, Ravi, Pandya, Tobias, Petri, Andrea, Pinna, Poultney, Christopher S., Serena, Rezny, Ruskin, Heather J., Yvan, Saeys, Ron, Shamir, Sirbu, Alina, Mingzhou, Song, Nicola, Soranzo, Alexander, Statnikov, Gustavo, Stolovitzky, Nicci, Vega, Paola Vera Licona, Jean Philippe Vert, Alessia, Visconti, Haizhou, Wang, Louis, Wehenkel, Lukas, Windhager, Yang, Zhang, Ralf, Zimmer

المساهمون: Daniel Marbach, James C Costello, Robert Küffner, Nicole M Vega, Robert J Prill, Diogo M Camacho, Kyle R Allison, Andrej Aderhold, Richard Bonneau, Yukun Chen, James J Collin, Francesca Cordero, Martin Crane, Frank Dondelinger, Mathias Drton, Roberto Esposito, Rina Foygel, Alberto de la Fuente, Jan Gerthei, Pierre Geurt, Alex Greenfield, Marco Grzegorczyk, Anne-Claire Haury, Benjamin Holme, Torsten Hothorn, Dirk Husmeier, Vân Anh Huynh-Thu, Alexandre Irrthum, Manolis Kelli, Guy Karlebach, Sophie Lèbre, Vincenzo De Leo, Aviv Madar, Subramani Mani, Fantine Mordelet, Harry Ostrer, Zhengyu Ouyang, Ravi Pandya, Tobias Petri, Andrea Pinna, Christopher S Poultney, Serena Rezny, Heather J Ruskin, Yvan Saey, Ron Shamir, Alina Sîrbu, Mingzhou Song, Nicola Soranzo, Alexander Statnikov, Gustavo Stolovitzky, Nicci Vega, Paola Vera-Licona, Jean-Philippe Vert, Alessia Visconti, Haizhou Wang, Louis Wehenkel, Lukas Windhager, Yang Zhang, Ralf Zimmer

المصدر: Nature methods

مصطلحات موضوعية: SELECTION, Bayes theorem, genetic association, Transcription, Genetic, principal component analysis, algorithm, article, bacterial metabolism, biofilm, bootstrapping, computer model, controlled study, Escherichia coli, gene control, gene expression, gene interaction, gene regulatory network, genetic transcription, genetic variability, microarray analysis, microbial community, Monte Carlo method, nonhuman, priority journal, Saccharomyces cerevisiae, Staphylococcus aureus Species Index: Escherichia coli, Staphylococcus aureus, Gene regulatory network, Inference, integration, computer.software_genre, Biochemistry, Bayes' theorem, 0302 clinical medicine, Oligonucleotide Array Sequence Analysis, Genetics, 0303 health sciences, TRANSCRIPTIONAL REGULATORY NETWORK, ESCHERICHIA-COLI, Algorithms, Biotechnology, Reverse engineering, EXPRESSION DATA, Systems biology, In silico, Biology, Machine learning, Article, gene regulatory networks, reverse engineering, 03 medical and health sciences, Gene interaction, Molecular Biology, 030304 developmental biology, Bootstrapping, business.industry, Computational Biology, Gene Expression Regulation, Bacterial, Cell Biology, Artificial intelligence, business, computer, Software, 030217 neurology & neurosurgery

وصف الملف: ELETTRONICO

الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::01bd67cd43235cc06f92f7fb3635f0f5Test
https://doi.org/10.1038/nmeth.2016Test

المؤلفون: Ralf Zimmer, Mihaela Zavolan, Diana Lieber, Lars Dölken, Jürgen Haas, Lukasz Jaskiewicz, Florian Erhard, Georg Malterer

المصدر: Erhard, F, Haas, J, Lieber, D, Malterer, G, Jaskiewicz, L, Zavolan, M, Doelken, L & Zimmer, R 2014, ' Widespread context dependency of microRNA-mediated regulation ', Genome Research, vol. 24, no. 6, pp. 906-919 . https://doi.org/10.1101/gr.166702.113Test

مصطلحات موضوعية: Gene regulatory network, Computational biology, PAR-CLIP, Cell Line, Tumor, TRANSLATIONAL REPRESSION, Genetics, Humans, Gene silencing, Gene Regulatory Networks, Gene Silencing, RNA, Messenger, Nucleotide Motifs, Transcription factor, Conserved Sequence, Genetics (clinical), GENE-EXPRESSION, Regulation of gene expression, SITES, IDENTIFICATION, biology, Genome, Human, Research, BINDING PROTEINS, RECOGNITION, Chromatin, MicroRNAs, TRANSCRIPTION FACTORS, Histone, DIFFERENTIAL EXPRESSION ANALYSIS, biology.protein, Human genome, TARGET MESSENGER-RNA

وصف الملف: application/pdf

الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2ef04f6bb8fc21e6e7a67c721c662299Test
https://doi.org/10.1101/gr.166702.113Test

المؤلفون: Ralf Zimmer, Gergely Csaba, Evi Berchtold

المصدر: PLoS ONE
PLoS ONE, Vol 11, Iss 10, p e0164513 (2016)

مصطلحات موضوعية: 0301 basic medicine, Computer science, Gene regulatory network, lcsh:Medicine, Gene Expression, 02 engineering and technology, Genetic Networks, Bioinformatics, Biochemistry, Gene expression, Databases, Genetic, Transcriptional regulation, Gene Regulatory Networks, lcsh:Science, Regulation of gene expression, Multidisciplinary, Genomics, Physical Sciences, Network Analysis, Research Article, Optimization, Computer and Information Sciences, 0206 medical engineering, Computational biology, Network Motifs, 03 medical and health sciences, DNA-binding proteins, Genetics, Animals, Humans, Gene Regulation, Set (psychology), Gene, Transcription factor, Models, Genetic, Gene Expression Profiling, lcsh:R, Organisms, Fungi, Biology and Life Sciences, Computational Biology, Proteins, Expression (computer science), Genome Analysis, Yeast, Regulatory Proteins, Gene expression profiling, 030104 developmental biology, Gene Expression Regulation, lcsh:Q, Target gene, 020602 bioinformatics, Mathematics, Transcription Factors

الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::4dfef47e31ed72000286822ffde258edTest
http://europepmc.org/articles/PMC5056719Test

المؤلفون: Gergely Csaba, Ralf Zimmer, Robert Küffner, Simon Dirmeier, Ludwig Geistlinger

المصدر: Nucleic Acids Research

مصطلحات موضوعية: Genetics, Saccharomyces cerevisiae Proteins, Models, Genetic, Citric Acid Cycle, Fatty Acids, Saccharomyces cerevisiae, Gluconeogenesis, Gene regulatory network, Computational Biology, Data interpretation, Context (language use), Computational biology, Biology, Petri net, biology.organism_classification, Gene Expression Regulation, Fungal, Gene Regulatory Networks, Gene, Phosphoenolpyruvate Carboxykinase (ATP), TRACE (psycholinguistics)

الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e1e010a5b06abfd979917f9848bd9614Test
https://doi.org/10.1093/nar/gkt631Test

المؤلفون: Ludwig Geistlinger, Gergely Csaba, Ralf Zimmer

المصدر: BMC Bioinformatics

مصطلحات موضوعية: 0301 basic medicine, Databases, Factual, Pathway analysis, Gene set enrichment, Gene regulatory network, Biology, computer.software_genre, Biochemistry, Bioconductor, 03 medical and health sciences, Differential expression, Structural Biology, Gene Regulatory Networks, Set (psychology), Molecular Biology, Sequence Analysis, RNA, Microarray analysis techniques, End user, Gene Expression Profiling, Applied Mathematics, Gene network enrichment, Microarray Analysis, Computer Science Applications, Gene expression profiling, 030104 developmental biology, Gene expression, Data mining, DNA microarray, computer, Software

الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c923e845ff179fffb939f989028b70cfTest
https://doi.org/10.1186/s12859-016-0884-1Test

المؤلفون: Ralf Zimmer, Lukas Windhager, Robert Küffner, Pegah Tavakkolkhah, Tobias Petri

المصدر: Bioinformatics. 28:1376-1382

مصطلحات موضوعية: Statistics and Probability, Dependency (UML), Discretization, Correlation coefficient, Computer science, Gene regulatory network, Inference, Saccharomyces cerevisiae, computer.software_genre, Biochemistry, Escherichia coli, Gene Regulatory Networks, Molecular Biology, Transcription factor, Analysis of Variance, Gene Expression Profiling, Mutual information, Expression (mathematics), Computer Science Applications, Gene expression profiling, Computational Mathematics, Computational Theory and Mathematics, Data mining, Analysis of variance, computer, Transcription Factors

الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0827e5ab0d0708299551d95b2059dc56Test
https://doi.org/10.1093/bioinformatics/bts143Test

المؤلفون: Ralf Zimmer, Orland Gonzalez

المصدر: Bioinformatics. 27:2707-2713

مصطلحات موضوعية: Statistics and Probability, Supplementary data, Genome, Gene Expression Profiling, Gene regulatory network, Hepacivirus, Exploratory analysis, Computational biology, Biology, Bioinformatics, Hepatitis C, Biochemistry, Computer Science Applications, Gene expression profiling, Computational Mathematics, Identification (information), Context analysis, Computational Theory and Mathematics, RNA interference, Humans, Gene Regulatory Networks, RNA Interference, Molecular Biology

الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::7e9e3bf1ba44e3cb1996e670319a169aTest
https://doi.org/10.1093/bioinformatics/btr469Test