دورية أكاديمية
AGAMEMNON: an Accurate metaGenomics And MEtatranscriptoMics quaNtificatiON analysis suite
| العنوان: | AGAMEMNON: an Accurate metaGenomics And MEtatranscriptoMics quaNtificatiON analysis suite |
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| المؤلفون: | Skoufos G., Almodaresi F., Zakeri M., Paulson J.N., Patro R., Hatzigeorgiou A.G., Vlachos I.S. |
| المصدر: | Genome Biology ; https://www.scopus.com/inward/record.uri?eid=2-s2.0-85124022486&doi=10.1186%2fs13059-022-02610-4&partnerID=40&md5=10653d2e39524ad74339e1ff408eb8d0Test |
| سنة النشر: | 2022 |
| المجموعة: | University of Thessaly Institutional Repository / Ιδρυματικό Αποθετήριο Πανεπιστημίου Θεσσαλίας |
| مصطلحات موضوعية: | article, DNA RNA hybridization, DNA sequencing, metagenomics, metatranscriptomics, microbiome, microorganism, nonhuman, RNA sequencing, DNA sequence, metagenome, sequence analysis, DNA, RNA, BioMed Central Ltd |
| الوصف: | We introduce AGAMEMNON (https://github.com/ivlachos/agamemnonTest) for the acquisition of microbial abundances from shotgun metagenomics and metatranscriptomic samples, single-microbe sequencing experiments, or sequenced host samples. AGAMEMNON delivers accurate abundances at genus, species, and strain resolution. It incorporates a time and space-efficient indexing scheme for fast pattern matching, enabling indexing and analysis of vast datasets with widely available computational resources. Host-specific modules provide exceptional accuracy for microbial abundance quantification from tissue RNA/DNA sequencing, enabling the expansion of experiments lacking metagenomic/metatranscriptomic analyses. AGAMEMNON provides an R-Shiny application, permitting performance of investigations and visualizations from a graphics interface. © 2022, The Author(s). |
| نوع الوثيقة: | article in journal/newspaper |
| اللغة: | English |
| تدمد: | 14747596 |
| العلاقة: | http://hdl.handle.net/11615/79098Test |
| DOI: | 10.1186/s13059-022-02610-4 |
| الإتاحة: | https://doi.org/10.1186/s13059-022-02610-4Test http://hdl.handle.net/11615/79098Test |
| رقم الانضمام: | edsbas.9129DEB6 |
| قاعدة البيانات: | BASE |
Full Text Finder | تدمد: | 14747596 |
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| DOI: | 10.1186/s13059-022-02610-4 |