دورية أكاديمية
The quail genome: insights into social behaviour, seasonal biology and infectious disease response
| العنوان: | The quail genome: insights into social behaviour, seasonal biology and infectious disease response |
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| المؤلفون: | Morris, Katrina M., Hindle, Matthew M., Boitard, Simon, Burt, David W., Danner, Angela F., Eory, Lel, Forrest, Heather L., Gourichon, David, Gros, Jerome, Hillier, Ladeana W., Jaffredo, Thierry, Khoury, Hanane, Lansford, Rusty, Leterrier, Christine, Loudon, Andrew, Mason, Andrew S., Meddle, Simone L., Minvielle, Francis, F., Minx, Patrick, Pitel, Frederique, Seiler, J. Patrick, Shimmura, Tsuyoshi, Tomlinson, Chad, Vignal, Alain, Webster, Robert G., Yoshimura, Takashi, Warren, Wesley C., Smith, Jacqueline |
| المساهمون: | University of Edinburgh (Edin.), Génétique Physiologie et Systèmes d'Elevage (GenPhySE ), Ecole Nationale Vétérinaire de Toulouse (ENVT), Institut National Polytechnique (Toulouse) (Toulouse INP), Université de Toulouse (UT)-Université de Toulouse (UT)-Institut National Polytechnique (Toulouse) (Toulouse INP), Université de Toulouse (UT)-Université de Toulouse (UT)-École nationale supérieure agronomique de Toulouse (ENSAT), Université de Toulouse (UT)-Université de Toulouse (UT)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), University of Southern Queensland (USQ), St Jude Children's Research Hospital, Unité Expérimentale Avicole de Tours (UE PEAT), Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Cellules Souches et Développement / Stem Cells and Development, Institut Pasteur Paris (IP)-Centre National de la Recherche Scientifique (CNRS), Washington State University (WSU), Laboratoire de Biologie du Développement IBPS (LBD), Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Institut de Biologie Paris Seine (IBPS), Institut National de la Santé et de la Recherche Médicale (INSERM)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS), University of Southern California (USC), Physiologie de la reproduction et des comportements Nouzilly (PRC), Institut Français du Cheval et de l'Equitation Saumur (IFCE)-Université de Tours (UT)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), University of Manchester Manchester, Génétique Animale et Biologie Intégrative (GABI), AgroParisTech-Université Paris-Saclay-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), The University of Tokyo (UTokyo), Nagoya University, University of Missouri Columbia (Mizzou), University of Missouri System, French National Research Agency (ANR) ANR-009-GENM-008 / HFSP 2015 award RGP0030/2015 / United States Department of Health & Human Services National Institutes of Health (NIH) - USA NIH National Institute of Allergy & Infectious Diseases (NIAID) HHSN266200700005C HHSN272201400006C |
| المصدر: | ISSN: 1741-7007. |
| بيانات النشر: | HAL CCSD BioMed Central |
| سنة النشر: | 2020 |
| المجموعة: | Université Toulouse III - Paul Sabatier: HAL-UPS |
| مصطلحات موضوعية: | genome, seasonality, photoperiod, coturnix japonica, quail, influenza, bird bu, [SDV.SA.SPA]Life Sciences [q-bio]/Agricultural sciences/Animal production studies, [SDV.SA.ZOO]Life Sciences [q-bio]/Agricultural sciences/Zootechny |
| الوصف: | International audience ; Background The Japanese quail (Coturnix japonica) is a popular domestic poultry species and an increasingly significant model species in avian developmental, behavioural and disease research. Results We have produced a high-quality quail genome sequence, spanning 0.93 Gb assigned to 33 chromosomes. In terms of contiguity, assembly statistics, gene content and chromosomal organisation, the quail genome shows high similarity to the chicken genome. We demonstrate the utility of this genome through three diverse applications. First, we identify selection signatures and candidate genes associated with social behaviour in the quail genome, an important agricultural and domestication trait. Second, we investigate the effects and interaction of photoperiod and temperature on the transcriptome of the quail medial basal hypothalamus, revealing key mechanisms of photoperiodism. Finally, we investigate the response of quail to H5N1 influenza infection. In quail lung, many critical immune genes and pathways were downregulated after H5N1 infection, and this may be key to the susceptibility of quail to H5N1. Conclusions We have produced a high-quality genome of the quail which will facilitate further studies into diverse research questions using the quail as a model avian species. |
| نوع الوثيقة: | article in journal/newspaper |
| اللغة: | English |
| العلاقة: | info:eu-repo/semantics/altIdentifier/pmid/32050986; hal-02625167; https://hal.inrae.fr/hal-02625167Test; https://hal.inrae.fr/hal-02625167/documentTest; https://hal.inrae.fr/hal-02625167/file/2020_Morris_BMC%20_Biologypdf_1Test; PRODINRA: 496751; PUBMED: 32050986; WOS: 000515410400002 |
| DOI: | 10.1186/s12915-020-0743-4 |
| الإتاحة: | https://doi.org/10.1186/s12915-020-0743-4Test https://hal.inrae.fr/hal-02625167Test https://hal.inrae.fr/hal-02625167/documentTest https://hal.inrae.fr/hal-02625167/file/2020_Morris_BMC%20_Biologypdf_1Test |
| حقوق: | http://creativecommons.org/licenses/byTest/ ; info:eu-repo/semantics/OpenAccess |
| رقم الانضمام: | edsbas.C08E8B67 |
| قاعدة البيانات: | BASE |
| DOI: | 10.1186/s12915-020-0743-4 |
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