المؤلفون: Anna Tonazzini, Emanuele Salerno, Ivan Merelli, Monica Zoppè, Claudia Caudai

المصدر: Biology, Vol 10, Iss 338, p 338 (2021)
Biology
Volume 10
Issue 4
Biology (Basel) 10 (2021): 338. doi:10.3390/biology10040338
info:cnr-pdr/source/autori:Caudai C.; Zoppè M.; Tonazzini A.; Merelli I.; Salerno E./titolo:Integration of multiple resolution data in 3D chromatin reconstruction using ChromStruct/doi:10.3390%2Fbiology10040338/rivista:Biology (Basel)/anno:2021/pagina_da:338/pagina_a:/intervallo_pagine:338/volume:10

مصطلحات موضوعية: 0301 basic medicine, QH301-705.5, 0206 medical engineering, CHIP-seq, 02 engineering and technology, Computational biology, General Biochemistry, Genetics and Molecular Biology, Article, Chromosome conformation capture, 03 medical and health sciences, chemistry.chemical_compound, chromatin conformation, medicine, Biology (General), CTCF CHIA-PET data, bayesian statistics, Chromatin conformation capture, General Immunology and Microbiology, biology, medicine.diagnostic_test, Experimental data, HI-C data, Chromatin, 030104 developmental biology, Histone, chemistry, CTCF, chromatin conformation capture, biology.protein, Chromatin conformation, RNA-seq, General Agricultural and Biological Sciences, Chromatin immunoprecipitation, 020602 bioinformatics, DNA, Fluorescence in situ hybridization

وصف الملف: application/pdf

الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a45629d4d601fa7939447950dd2d19d8Test
https://www.mdpi.com/2079-7737/10/4/338Test

المؤلفون: Claudia Caudai, Anna Tonazzini, Emanuele Salerno, Ivan Merelli, Monica Zoppè

المصدر: IEEE/ACM transactions on computational biology and bioinformatics (Online) 16 (2019): 1867–1878. doi:10.1109/TCBB.2018.2838669
info:cnr-pdr/source/autori:Caudai C.; Salerno E.; Zoppè M.; Merelli I.; Tonazzini A./titolo:ChromStruct 4: a Python code to estimate the chromatin structure from Hi-C data/doi:10.1109%2FTCBB.2018.2838669/rivista:IEEE%2FACM transactions on computational biology and bioinformatics (Online)/anno:2019/pagina_da:1867/pagina_a:1878/intervallo_pagine:1867–1878/volume:16

مصطلحات موضوعية: Chromatin configuration, Chromosome conformation capture, Computer science, business.industry, Applied Mathematics, Monte Carlo method, Score, Python (programming language), Bayesian estimation, Visualization, Data modeling, Genetics, Quaternion, business, computer, Algorithm, Biotechnology, computer.programming_language, Graphical user interface

الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::4b1e12a39710657f7ad83b06677b8653Test
https://openportal.isti.cnr.it/doc?id=people______::57f039feeb5adbf28ed9aa7f4b0c333dTest

المؤلفون: Anna Tonazzini, Monica Zoppè, Claudia Caudai, Emanuele Salerno

المصدر: IEEE/ACM transactions on computational biology and bioinformatics
16 (2019): 550–559. doi:10.1109/TCBB.2018.2791439
info:cnr-pdr/source/autori:Caudai C.; Salerno E.; Zoppe M.; Tonazzini A./titolo:Estimation of the spatial chromatin structure based on a multiresolution bead-chain model/doi:10.1109%2FTCBB.2018.2791439/rivista:IEEE%2FACM transactions on computational biology and bioinformatics (Print)/anno:2019/pagina_da:550/pagina_a:559/intervallo_pagine:550–559/volume:16

مصطلحات موضوعية: Models, Molecular, Scale (ratio), Computer science, Bioinformatics, Polymers, Score, Translation (geometry), Cell Line, Set (abstract data type), Chromosome conformation capture, Genetics, Humans, Chromatin Fiber, Chromatin configuration, Fiber (mathematics), Applied Mathematics, Biological system modeling, Data models, Computational Biology, Reproducibility of Results, Computational modeling, Bayes Theorem, DNA, Genomics, Bayesian estimation, Quantitative Biology::Genomics, Chromatin, Algorithm, Algorithms, Biotechnology

الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ea1ffe53fa5929a96f0d4a113e11ae03Test
https://pubmed.ncbi.nlm.nih.gov/29994172Test

المؤلفون: Monica Zoppè, Claudia Caudai, Emanuele Salerno, Ivan Merelli, Anna Tonazzini

المصدر: PDP 2018-26th Euromicro International Conference on Parallel, Distributed and Network-based Processing (PDP), pp. 134–137, Cambridge, UK, 21-23 March 2018
info:cnr-pdr/source/autori:Caudai C.; Zoppè M.; Salerno E.; Merelli I.; Tonazzini A./congresso_nome:PDP 2018-26th Euromicro International Conference on Parallel, Distributed and Network-based Processing (PDP)/congresso_luogo:Cambridge, UK/congresso_data:21-23 March 2018/anno:2018/pagina_da:134/pagina_a:137/intervallo_pagine:134–137
PDP

مصطلحات موضوعية: 0301 basic medicine, Quantitative Biology::Biomolecules, Hierarchical Reconstruction, Parallelizable manifold, Computer science, 3D reconstruction, Monte Carlo method, Atom (order theory), Chromatin, Chromosome conformation capture, 03 medical and health sciences, Protein Motion, 030104 developmental biology, Parallel Computing, Chain (algebraic topology), Macromolecules, Biological system, Quaternion, Selection (genetic algorithm)

الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::44c7ea24a13c377c965e61207b2a7e93Test
http://www.cnr.it/prodotto/i/387911Test

المؤلفون: Anna Tonazzini, Monica Zoppè, Claudia Caudai, Emanuele Salerno

مصطلحات موضوعية: Mathematical optimization, Computer science, Score, Scale (descriptive set theory), Translation (geometry), Chromatin, Nuclear DNA, Set (abstract data type), Data set, Chromosome conformation capture, Simulated annealing, Genomic Segment, Code (cryptography), Algorithm

الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::402bfa75d0438ada5fc3b8454cab5b72Test
https://doi.org/10.1101/075184Test

المؤلفون: Emanuele Salerno, Monica Zoppè, Anna Tonazzini, Claudia Caudai

المصدر: BMTL 2014-Bringing Maths to Life, pp. 42–42, Napoli, Italia, 27-29 ottobre 2014
Mathematical Models in Biology ISBN: 9783319234960
Mathematical Models in Biology. Bringing Mathematics to Life, edited by Valeria Zazzu, Maria Brigida Ferraro, Mario R. Guarracino, pp. 161–171. Berlin Heidelberg: Springer, 2015
info:cnr-pdr/source/autori:Caudai C.; Salerno E.; Zoppè M.; Tonazzini A./congresso_nome:BMTL 2014-Bringing Maths to Life/congresso_luogo:Napoli, Italia/congresso_data:27-29 ottobre 2014/anno:2014/pagina_da:42/pagina_a:42/intervallo_pagine:42–42
info:cnr-pdr/source/autori:Caudai C.; Salerno E.; Zoppé M.; Tonazzini A./titolo:A statistical approach to infer 3D chromatin structure/titolo_volume:Mathematical Models in Biology. Bringing Mathematics to Life/curatori_volume:Valeria Zazzu, Maria Brigida Ferraro, Mario R. Guarracino/editore: /anno:2015

مصطلحات موضوعية: education.field_of_study, Chromosome conformation capture, Computer science, Population, Probabilistic logic, Probability density function, Translation (geometry), Chromatin structure, Set (abstract data type), Computational biology, Monte Carlo Methods, Euclidean geometry, Quaternions, education, Quaternion, Algorithm

الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::94bbf86ca896420726c89b9dd89c4502Test
https://openportal.isti.cnr.it/doc?id=people______::a20f0b009b033d444de07777b0600fc9Test

المؤلفون: Anna Tonazzini, Claudia Caudai, Monica Zoppè, Emanuele Salerno

المصدر: BMC Bioinformatics
BMC bioinformatics 16 (2015). doi:10.1186/s12859-015-0667-0
info:cnr-pdr/source/autori:Caudai C.; Salerno E.; Zoppè M.; Tonazzini A./titolo:Inferring 3D chromatin structure using a multiscale approach based on quaternions/doi:10.1186%2Fs12859-015-0667-0/rivista:BMC bioinformatics/anno:2015/pagina_da:/pagina_a:/intervallo_pagine:/volume:16

مصطلحات موضوعية: Computer science, Population, Molecular Conformation, Chromatin structure, Genome, Biochemistry, Computational biology, Chromosome conformation capture, Set (abstract data type), chemistry.chemical_compound, User-Computer Interface, Structural Biology, Gene density, Humans, education, Quaternion, Molecular Biology, education.field_of_study, Internet, Applied Mathematics, Methodology Article, Chromosome, DNA, Genomics, Chromatin, Computer Science Applications, 3d chromatin structure, chemistry, Simulated annealing, DNA microarray, Quaternions, Algorithm, Monte Carlo Method, Algorithms, Multiscale approach

الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b12d36140d225f8ceafb89800c84e933Test