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المؤلفون: Rollins, Zachary A, Faller, Roland, George, Steven C
المصدر: Computational and Structural Biotechnology Journal. 20:2124-2133
مصطلحات موضوعية: LJ Contact, Biophysics, Biochemistry, Mechanosensing, Structural Biology, Genetics, solvent accessible surface area, standard error of measurement, peptide-major histocompatibility complex, TCR-pMHC, COM, SASA, H-Bond, hydrogen bond, root mean square fluctuations, Numerical and Computational Mathematics, SMD, pMHC, Computation Theory and Mathematics, Lennard-Jones contact, APC, RMSF, Computer Science Applications, Kinetics, center of mass, antigen presenting cell, SEM, Immunotherapy, steered molecular dynamics, T cell receptor, TCR, Force-dependent, Biotechnology
وصف الملف: application/pdf
الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1ac7ef298c9bf931b84f4471cf671e50Test
https://doi.org/10.1016/j.csbj.2022.04.018Test -
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المصدر: Journal of Structural Biology: X
Journal of Structural Biology: X, Vol 5, Iss, Pp 100055-(2021)مصطلحات موضوعية: Soluble proteins, Chemistry, Membrane bound, QH301-705.5, Solvent accessible surface area, Amino acid residue populations, Hydropathic interactions, Structural Biology, Graphical Structural Biology Review, Membrane proteins, Key (cryptography), Biophysics, Protein structure, Biology (General), Protein secondary structure, ComputingMethodologies_COMPUTERGRAPHICS
الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::00d938e7465b1f20e6d8c8adb398d463Test
https://pubmed.ncbi.nlm.nih.gov/34934943Test -
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المصدر: Computational and Structural Biotechnology Journal
Computational and Structural Biotechnology Journal, Vol 19, Iss, Pp 6125-6139 (2021)مصطلحات موضوعية: SHP2, Src homology 2 domain-containing phosphatase 2, CTLA-4, cytotoxic T lymphocyte-associated antigen 4, NSML, Noonan syndrome with multiple lentigines, Allosteric regulation, Phosphatase, Biophysics, Protein Data Bank (RCSB PDB), Protein tyrosine phosphatase, FRET, Förster resonance energy transfer, SH2 domain, Biochemistry, PD-1, programmed cell death protein 1, RMSF, root mean square fluctuation, RMSD, root mean square deviation, SAXS, small angle X-ray scattering, PMF, potential of mean force, Settore CHIM/02, Structural Biology, NS, Noonan syndrome, Genetics, Protein flexibility, pY, phosphorylated tyrosine, Binding site, PDB, protein data bank, ComputingMethodologies_COMPUTERGRAPHICS, JMML, juvenile myelomonocytic leukemia, biology, Chemistry, Wild type, Active site, SHP2 regulatory mechanism, REMD, replica exchange molecular dynamics, MD, molecular dynamics, SIRPalpha, signal regulatory protein alpha, Computer Science Applications, Inter-domain dynamics, Replica exchange molecular dynamics simulations, biology.protein, SASA, solvent accessible surface area, RTK, receptor tyrosine kinase, BTLA, B and T lymphocyte attenuator, PTP, protein tyrosine phosphatase, TP248.13-248.65, SH2, Src homology 2, Biotechnology, Research Article
الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ea624e0755bc37ad67461a27a6e74f48Test
https://pubmed.ncbi.nlm.nih.gov/34900129Test -
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المؤلفون: Gerhard Meissner, Daniel A. Pasek, Venkat R. Chirasani
المصدر: The Journal of Biological Chemistry
مصطلحات موضوعية: AMPPCP, phosphomethylphosphonic acid adenylate ester, Allosteric regulation, AMPPCP, Adenylate kinase, EC, excitation–contraction, Biochemistry, CSol, core α-solenoid, allosteric communications, MH, malignant hyperthermia, Adenosine Triphosphate, PDB, Protein Data Bank, Caffeine, medicine, ryanodine receptor, Humans, Binding site, skeletal muscle, Muscle, Skeletal, Molecular Biology, ATP/Caf, ATP and caffeine, RYR1, RyR1, ryanodine receptor type 1, calcium, Binding Sites, Chemistry, Ryanodine receptor, Endoplasmic reticulum, Skeletal muscle, SR, sarcoplasmic reticulum, Ryanodine Receptor Calcium Release Channel, Cell Biology, molecular dynamics simulations, SASA, solvent-accessible surface area, musculoskeletal system, RyR, ryanodine receptor, MD, molecular dynamics, CTD, C-terminal domain, sarcoplasmic reticulum, TaF, thumb and forefingers, ATP, medicine.anatomical_structure, HEK293 Cells, Biophysics, medicine.symptom, tissues, Caf, caffeine, Muscle contraction, Research Article, Protein Binding
الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::78404ea88e6d2d9f7b54181373815385Test
http://europepmc.org/articles/PMC8408527Test -
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المؤلفون: Frank Gondelaud, Fabien Chirot, Adam Liwo, Sylvie Ricard-Blum, Aurélien Le Fèvre, Bertrand Duclos, Adriana E. Miele, Mathilde Bouakil
المساهمون: Architecture et fonction des macromolécules biologiques (AFMB), Aix Marseille Université (AMU)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Spectrométrie des biomolécules et agrégats (SPECTROBIO), Institut Lumière Matière [Villeurbanne] (ILM), Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Centre National de la Recherche Scientifique (CNRS)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Centre National de la Recherche Scientifique (CNRS), Institut des Sciences Analytiques (ISA), Université de Lyon-Université de Lyon-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS), Biophysics of complex systems, Université de Lyon-Université de Lyon-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS)-Université Claude Bernard Lyon 1 (UCBL), ANABIO-MS - Analyse biomoléculaire par spectrométrie de masse - Biological Analysis by Mass Spectrometry, Catalyse Synthèse et Environnement (CASYEN), Institut de Chimie et Biochimie Moléculaires et Supramoléculaires (ICBMS), Université de Lyon-Université de Lyon-École Supérieure de Chimie Physique Électronique de Lyon (CPE)-Institut National des Sciences Appliquées de Lyon (INSA Lyon), Université de Lyon-Institut National des Sciences Appliquées (INSA)-Institut National des Sciences Appliquées (INSA)-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Institut National des Sciences Appliquées (INSA)-Institut National des Sciences Appliquées (INSA)-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS), University of Gdańsk (UG), Assemblages Supramoléculaires Péricellulaires et Extracellulaires (ASPE)
المصدر: Matrix Biology Plus
Matrix Biology Plus, 2021, 12 (3-4), pp.100081. ⟨10.1016/j.mbplus.2021.100081⟩
'Matrix Biology Plus ', vol: 12, pages: 100081-1-100081-19 (2021)
Matrix Biology Plus, Vol 12, Iss, Pp 100081-(2021)مصطلحات موضوعية: IDP, GAG, glycosaminoglycan, random-coil, SDC, Biochemistry, TFE, trifluoroethanol, Syndecan 1, SAXS, small angle X-ray scattering, ESI-MS, electrospray ionization - mass spectrometry, Special Section on Molecular and Supramolecular structure of the extracellular matrix, Edited by Sylvie Ricard-Blum, solvent accessible surface area, Biology (General), collision cross section, CD, circular dichroism, ectodomain, SASA, SDS, TFE, trifluoroethanol, DLS, dynamic light scattering, GAG, [SDV.BBM.BS]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Structural Biology [q-bio.BM], biology, Chemistry, Extracellular matrix assembly, cell-matrix interactions, RC, random-coil, dynamic light scattering, size exclusion chromatography, electrospray ionization - ion mobility - mass spectrometry, SAXS, SEC, CSD, charge state distribution, CD, Ectodomain, sodium dodecyl sulfate, embryonic structures, conformations, ED, ectodomain, DTT, charge state distribution, animal structures, SDS, sodium dodecyl sulfate, Syndecans, Histology, QH301-705.5, PMG, pre-molten globule, DLS, small angle X-ray scattering, Integrin, Biophysics, MoRF, molecular recognition feature, MoRF, IDP, intrinsically disordered protein, Intrinsically disordered proteins, CSD, Growth factor receptor, SDC, syndecan, ESI-IM-MS, Cell surface receptor, glycosaminoglycan, Genetics, ESI-IM-MS, electrospray ionization - ion mobility - mass spectrometry, Cell adhesion, electrospray ionization - mass spectrometry, Molecular Biology, PAGE, polyacrylamide gel electrophoresis, CCS, collision cross section, DTT, dithiothreitol, SASA, solvent accessible surface area, SEC, size exclusion chromatography, molecular recognition feature, PMG, dithiothreitol, ESI-MS, Cell Biology, intrinsically disordered protein, ED, CCS, circular dichroism, PAGE, carbohydrates (lipids), biology.protein, pre-molten globule, polyacrylamide gel electrophoresis, RC, syndecan
وصف الملف: application/pdf
الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ffdf479eba653d09f2444a8e356f8047Test
https://doi.org/10.1016/j.mbplus.2021.100081Test -
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المؤلفون: Joon Sang Lee, Shinill Kang, Hae Gon Lee
المصدر: Computational and Structural Biotechnology Journal
Computational and Structural Biotechnology Journal, Vol 19, Iss, Pp 3372-3383 (2021)مصطلحات موضوعية: Protein G, spG, Streptococcal Protein G, RMSD, Root Mean Square Deviation, Biophysics, ELISA, Enzyme-linked Immunosorbent Assays, SASA, Solvent Accessible Surface Area, spA, Staphylococcal Protein A, MD, Molecular Dynamics, Molecular dynamics, Affinity chromatography, Biochemistry, DNA-binding protein, Protein docking, 03 medical and health sciences, 0302 clinical medicine, SMD, Steered Molecular Dynamics, Structural Biology, Genetics, Fc, Fragment Crystallizable, Macromolecular docking, 030304 developmental biology, ComputingMethodologies_COMPUTERGRAPHICS, chemistry.chemical_classification, 0303 health sciences, APBS, Advanced Poisson–Boltzmann Solver, biology, IgG, Immunoglobulin G, Chemistry, Hydrogen bond, Ligand (biochemistry), Computer Science Applications, Amino acid, MM/PBSA, Molecular Mechanics Poisson–Boltzmann Surface Area, BIR, Between Protein–Protein Interface Residues, 030220 oncology & carcinogenesis, AFM, Atomic Force Microscopy, Immunoglobulin G, biology.protein, Protein A, TP248.13-248.65, Biotechnology, Research Article
الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::9516f000062daef8c0c3017e705a61d3Test
https://pubmed.ncbi.nlm.nih.gov/34194664Test -
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المؤلفون: Colyn Crane-Robinson, Peter L. Privalov, Anatoliy I. Dragan
المصدر: Dragan, A, Privalov, P & Crane-Robinson, C 2019, ' Thermodynamics of DNA: heat capacity changes on duplex unfolding ', European Biophysics Journal, vol. 48, no. 8, pp. 773-779 . https://doi.org/10.1007/s00249-019-01403-1Test
European Biophysics Journalمصطلحات موضوعية: 0301 basic medicine, Thermal denaturation, heat capacity, Heat capacity, 030103 biophysics, Hot Temperature, Surface Properties, Globular protein, Biophysics, Hydration, Thermodynamics, Nucleic Acid Denaturation, Accessible surface area, 03 medical and health sciences, chemistry.chemical_compound, surface polarity, solvent accessible surface area, chemistry.chemical_classification, Base Sequence, Chemistry, Solvent accessible surface area, General Medicine, DNA, 030104 developmental biology, Surface polarity, Duplex (building), Polar, Original Article, hydration, Macromolecule
وصف الملف: application/pdf
الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::8c688fff19dbda32349ad98d1cdb9f0eTest
https://researchportal.port.ac.uk/ws/files/16476628/Thermodynamics_of_DNA.pdfTest -
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المؤلفون: Shankar Prasad Kanaujia, Prerana Gogoi
المصدر: Computational and Structural Biotechnology Journal, Vol 17, Iss, Pp 333-344 (2019)
Computational and Structural Biotechnology Journalمصطلحات موضوعية: R15P, ribose-1,5-bisphosphate, lcsh:Biotechnology, Biophysics, NMP, nucleoside 5′-monophosphate, Pentose, Isomerase, Pentose phosphate pathway, R15Pi, ribose-1,5-bisphosphate isomerase, Biochemistry, RMSF, root mean square fluctuation, RMSD, root mean square deviation, 03 medical and health sciences, chemistry.chemical_compound, Ribulose-1,5-bisphosphate, 0302 clinical medicine, Nucleoside 5′-monophosphate degradation pathway, Structural Biology, lcsh:TP248.13-248.65, Molecular dynamics simulation, Ribose, Genetics, ADP-R1P, ADP-dependentribose-1-phosphate, Binding site, ASU, asymmetric unit, 030304 developmental biology, chemistry.chemical_classification, 0303 health sciences, RuBisCO, ribulose-1,5-bisphosphate carboxylase/oxygenase, biology, EFBE, estimated free energy of binding, LGA, Lamarckian genetic algorithm, Active site, Substrate (chemistry), Invariant water molecule, MD, molecular dynamics, 3-PGA, 3-phosphoglycerate, Computer Science Applications, Enzyme, chemistry, Ribose-1,5-bisphosphate, RuBP, ribulose-1,5-bisphosphate, 030220 oncology & carcinogenesis, Molecular docking, biology.protein, SASA, solvent accessible surface area, R1P, ribose-1-phosphate, Research Article, Biotechnology
الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::4df8ca57bee8665c7a9efe8536c2ec57Test
http://www.sciencedirect.com/science/article/pii/S2001037019300054Test -
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المؤلفون: Kenji Yasuoka, Wresti L. Anggayasti, Ricardo L. Mancera, Eiji Yamamoto, Erik Helmerhorst, Kenta Ogino
المصدر: Computational and Structural Biotechnology Journal
Computational and Structural Biotechnology Journal, Vol 18, Iss, Pp 1160-1172 (2020)مصطلحات موضوعية: Circular dichroism, HMGB1, High Mobility Group Box 1, lcsh:Biotechnology, Biophysics, chemical and pharmacologic phenomena, Coarse-grained molecular dynamics simulations, Biochemistry, RAGE (receptor), 03 medical and health sciences, Molecular dynamics, 0302 clinical medicine, Structural Biology, Glycation, lcsh:TP248.13-248.65, Genetics, Molecule, CG, coarse-grained, Receptor, Protein secondary structure, 030304 developmental biology, ComputingMethodologies_COMPUTERGRAPHICS, chemistry.chemical_classification, HMGB1, 0303 health sciences, PACE, proteins with atomic details in a coarse-grained environment, PACE, MD, molecular dynamics, Computer Science Applications, Amino acid, CD, Circular dichroism, chemistry, 030220 oncology & carcinogenesis, SASA, solvent accessible surface area, Acidic tail, Biotechnology, Research Article
الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::9974bff714fbf9beab0133bf9975b1dcTest
https://pubmed.ncbi.nlm.nih.gov/32514327Test -
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المؤلفون: Debby D. Wang, Hong Yan, Le Ou-Yang, Mengxu Zhu, Haoran Xie
المصدر: Computational and Structural Biotechnology Journal
Computational and Structural Biotechnology Journal, Vol 18, Iss, Pp 439-454 (2020)مصطلحات موضوعية: Computer science, computer.software_genre, Biochemistry, LSTM, long short-term memory, MM/PBSA, molecular mechanics/Poisson-Boltzmann surface area, Molecular dynamics, 0302 clinical medicine, Structural Biology, Feature (machine learning), ctd, composition transition and distribution descriptors, Missense mutation, 0303 health sciences, aacomp, amino acid composition descriptors, MD, molecular dynamics, kappa, Kappa shape indices, Computer Science Applications, RF, random forest, Local geometrical features, HMM, hidden Markov model, MM/GBSA, molecular mechanics/generalized born surface area, 030220 oncology & carcinogenesis, Mutation (genetic algorithm), Benchmark (computing), const, constitutional descriptors, F1 score, Research Article, Biotechnology, CNN, convolutional neural network, RNN, recurrent neural network, lcsh:Biotechnology, Mutation impact, Biophysics, Protein-ligand binding affinity, Machine learning, WTP, wildtype protein, 03 medical and health sciences, lcsh:TP248.13-248.65, Molecular descriptor, Molecular dynamics (MD) simulations, Genetics, RMSD, root-mean-square deviation, paacomp, type 1 pseudo amino acid composition descriptors, ComputingMethodologies_COMPUTERGRAPHICS, 030304 developmental biology, business.industry, Deep learning, Time series features, SASA, solvent accessible surface area, Artificial intelligence, top, topological descriptors, business, computer, Protein ligand
الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::56eb3e3664a39ab89cc044b4cac064c7Test
https://pubmed.ncbi.nlm.nih.gov/32153730Test