-
1Multi-reference spectral library yields almost complete coverage of heterogeneous LC-MS/MS data sets
المؤلفون: Andreas Schmidt, Axel Imhof, Ralf Zimmer, Constantin Ammar, Gergely Csaba, Evi Berchtold
مصطلحات موضوعية: Proteomics, False discovery rate, Swath ms, Computer science, Peptide, Bioinformatics, Mass spectrometry, Biochemistry, Spectral line, Peptide Library, Tandem Mass Spectrometry, Lc ms ms, Databases, Protein, Cluster analysis, chemistry.chemical_classification, Physics, Charge (physics), Replicate, General Chemistry, Peptide fragmentation, Peptide Fragments, Data set, chemistry, Data analysis, Algorithm, Algorithms, Chromatography, Liquid
الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2f5478f43c9bdfa48a1e9337b8ab5642Test
-
2
المؤلفون: Robert Küffner, Ludwig Geistlinger, Ralf Zimmer, Stefan Altmann, Tobias Petri
المصدر: Bioinformatics 31, 2836-2843 (2015)
مصطلحات موضوعية: Statistics and Probability, False discovery rate, Saccharomyces cerevisiae Proteins, Computer science, Gene regulatory network, Inference, Machine learning, computer.software_genre, Biochemistry, Machine Learning, Gene Expression Regulation, Fungal, False Positive Reactions, Gene Regulatory Networks, Spurious relationship, Molecular Biology, Oligonucleotide Array Sequence Analysis, business.industry, Gene Expression Profiling, Systems Biology, Expression (mathematics), Computer Science Applications, Computational Mathematics, Computational Theory and Mathematics, Data mining, Artificial intelligence, business, computer, Algorithms, Software, Signal Transduction
وصف الملف: application/pdf
الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::8965f636fd559ac5c9468e9465f2cecbTest
https://doi.org/10.1093/bioinformatics/btv215Test -
3
المؤلفون: Daniel, Marbach, Costello, James C., Robert, Küffner, Vega, Nicole M., Prill, Robert J., Camacho, Diogo M., Allison, Kyle R., Andrej, Aderhold, Richard, Bonneau, Yukun, Chen, Collins, James J., Francesca, Cordero, Martin, Crane, Frank, Dondelinger, Mathias, Drton, Roberto, Esposito, Rina, Foygel, Alberto de la Fuente, Jan, Gertheiss, Pierre, Geurts, Alex, Greenfield, Marco, Grzegorczyk, Anne Claire Haury, Benjamin, Holmes, Torsten, Hothorn, Dirk, Husmeier, Vân Anh Huynh Thu, Alexandre, Irrthum, Manolis, Kellis, Guy, Karlebach, Sophie, Lèbre, Vincenzo De Leo, Aviv, Madar, Subramani, Mani, Fantine, Mordelet, Harry, Ostrer, Zhengyu, Ouyang, Ravi, Pandya, Tobias, Petri, Andrea, Pinna, Poultney, Christopher S., Serena, Rezny, Ruskin, Heather J., Yvan, Saeys, Ron, Shamir, Sirbu, Alina, Mingzhou, Song, Nicola, Soranzo, Alexander, Statnikov, Gustavo, Stolovitzky, Nicci, Vega, Paola Vera Licona, Jean Philippe Vert, Alessia, Visconti, Haizhou, Wang, Louis, Wehenkel, Lukas, Windhager, Yang, Zhang, Ralf, Zimmer
المساهمون: Daniel Marbach, James C Costello, Robert Küffner, Nicole M Vega, Robert J Prill, Diogo M Camacho, Kyle R Allison, Andrej Aderhold, Richard Bonneau, Yukun Chen, James J Collin, Francesca Cordero, Martin Crane, Frank Dondelinger, Mathias Drton, Roberto Esposito, Rina Foygel, Alberto de la Fuente, Jan Gerthei, Pierre Geurt, Alex Greenfield, Marco Grzegorczyk, Anne-Claire Haury, Benjamin Holme, Torsten Hothorn, Dirk Husmeier, Vân Anh Huynh-Thu, Alexandre Irrthum, Manolis Kelli, Guy Karlebach, Sophie Lèbre, Vincenzo De Leo, Aviv Madar, Subramani Mani, Fantine Mordelet, Harry Ostrer, Zhengyu Ouyang, Ravi Pandya, Tobias Petri, Andrea Pinna, Christopher S Poultney, Serena Rezny, Heather J Ruskin, Yvan Saey, Ron Shamir, Alina Sîrbu, Mingzhou Song, Nicola Soranzo, Alexander Statnikov, Gustavo Stolovitzky, Nicci Vega, Paola Vera-Licona, Jean-Philippe Vert, Alessia Visconti, Haizhou Wang, Louis Wehenkel, Lukas Windhager, Yang Zhang, Ralf Zimmer
المصدر: Nature methods
مصطلحات موضوعية: SELECTION, Bayes theorem, genetic association, Transcription, Genetic, principal component analysis, algorithm, article, bacterial metabolism, biofilm, bootstrapping, computer model, controlled study, Escherichia coli, gene control, gene expression, gene interaction, gene regulatory network, genetic transcription, genetic variability, microarray analysis, microbial community, Monte Carlo method, nonhuman, priority journal, Saccharomyces cerevisiae, Staphylococcus aureus Species Index: Escherichia coli, Staphylococcus aureus, Gene regulatory network, Inference, integration, computer.software_genre, Biochemistry, Bayes' theorem, 0302 clinical medicine, Oligonucleotide Array Sequence Analysis, Genetics, 0303 health sciences, TRANSCRIPTIONAL REGULATORY NETWORK, ESCHERICHIA-COLI, Algorithms, Biotechnology, Reverse engineering, EXPRESSION DATA, Systems biology, In silico, Biology, Machine learning, Article, gene regulatory networks, reverse engineering, 03 medical and health sciences, Gene interaction, Molecular Biology, 030304 developmental biology, Bootstrapping, business.industry, Computational Biology, Gene Expression Regulation, Bacterial, Cell Biology, Artificial intelligence, business, computer, Software, 030217 neurology & neurosurgery
وصف الملف: ELETTRONICO
الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::01bd67cd43235cc06f92f7fb3635f0f5Test
https://doi.org/10.1038/nmeth.2016Test -
4
المؤلفون: Gergely Csaba, Ralf Zimmer, Evi Berchtold
المصدر: Bioinformatics (Oxford, England). 33(12)
مصطلحات موضوعية: 0301 basic medicine, Statistics and Probability, Current (mathematics), Computer science, Process (engineering), Breast Neoplasms, Computational biology, Biochemistry, Set (abstract data type), 03 medical and health sciences, Consistency (database systems), Humans, Differential (infinitesimal), Molecular Biology, Gene, Biological Phenomena, Computational Biology, Molecular Sequence Annotation, Biological process, Computer Science Applications, Computational Mathematics, 030104 developmental biology, Computational Theory and Mathematics, Enhanced Data Rates for GSM Evolution, Algorithms, Metabolic Networks and Pathways, Software
الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ba889e665cc6e49ec1cd60f22074a009Test
https://pubmed.ncbi.nlm.nih.gov/28165113Test -
5
المصدر: Bioinformatics
مصطلحات موضوعية: Statistics and Probability, Gene Regulation and Transcriptomics, Neoplasms, Nerve Tissue, Gene regulatory network, Computational biology, Biology, Biochemistry, Gene expression, Humans, Ismb/Eccb 2011 Proceedings Papers Committee July 17 to July 19, 2011, Vienna, Austria, Gene Regulatory Networks, Molecular Biology, Gene, Transcription factor, Regulation of gene expression, Genetics, Gene Expression Profiling, Proteins, Original Papers, Graph, Computer Science Applications, Gene expression profiling, Gene Expression Regulation, Neoplastic, Computational Mathematics, Computational Theory and Mathematics, Pairwise comparison, Algorithms, Software, Signal Transduction
الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::acb6cade66c43e699fb7356f8c194ee6Test
http://europepmc.org/articles/PMC3117393Test -
6
المؤلفون: Florian Erhard, Ralf Zimmer
المصدر: Bioinformatics
مصطلحات موضوعية: Statistics and Probability, Scoring system, RNA, Untranslated, Sequence alignment, Computational biology, Biology, computer.software_genre, Biochemistry, Deep sequencing, Eccb 2010 Conference Proceedings September 26 to September 29, 2010, Ghent, Belgium, Position (vector), Humans, Molecular Biology, Rna secondary structure prediction, Web site, Base Sequence, Non-coding RNA, Class (biology), Original Papers, Computer Science Applications, Sequence Analysis, Alignment and Next Generation Sequencing, Computational Mathematics, Computational Theory and Mathematics, Data mining, computer, Sequence Alignment, Algorithms
الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f47eefc0b745c9f461f4b48d2072b18dTest
http://europepmc.org/articles/PMC2935403Test -
7
المؤلفون: Caroline C. Friedel, Jan Krumsiek, Ralf Zimmer
المصدر: Journal of Computational Biology. 16:971-987
مصطلحات موضوعية: Proteomics, Tandem affinity purification, Saccharomyces cerevisiae Proteins, Computer science, Saccharomyces cerevisiae, Computational biology, Bioinformatics, Interactome, Yeast, Protein–protein interaction, Set (abstract data type), Data set, Computational Mathematics, Identification (information), Computational Theory and Mathematics, Bootstrapping (electronics), Modeling and Simulation, Protein Interaction Mapping, Genetics, Molecular Biology, Algorithms
الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a78280a0d9030da955b3e3f8f6992d87Test
https://doi.org/10.1089/cmb.2009.0023Test -
8
المؤلفون: Ralf Zimmer, Gergely Csaba, Fabian Birzele, Jan E. Gewehr
المصدر: Bioinformatics. 23:e205-e211
مصطلحات موضوعية: Models, Molecular, Statistics and Probability, Computer science, Molecular Sequence Data, Structural alignment, Sequence Homology, computer.software_genre, Biochemistry, Conserved sequence, Set (abstract data type), Protein structure, Similarity (network science), Sequence Analysis, Protein, Computer Simulation, Amino Acid Sequence, Molecular Biology, Multiple sequence alignment, business.industry, Proteins, A protein, SUPERFAMILY, Pattern recognition, Computer Science Applications, Computational Mathematics, Models, Chemical, Computational Theory and Mathematics, Artificial intelligence, Data mining, Voronoi diagram, business, Sequence Alignment, computer, Algorithms
الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f677d56d0e94b263308a68f05fcb43dfTest
https://doi.org/10.1093/bioinformatics/btl294Test -
9
المصدر: BMC Bioinformatics
مصطلحات موضوعية: INDEL Mutation, Genome, Human, Sequence Analysis, RNA, High-Throughput Nucleotide Sequencing, Humans, Exons, RNA, Messenger, Transcriptome, Algorithms, Software
الوصول الحر: https://explore.openaire.eu/search/publication?articleId=pmid________::7f22ba6bed1fc77e5a4bd1a71a1fb38eTest
https://pubmed.ncbi.nlm.nih.gov/25928589Test -
10
المؤلفون: Robert Küffner, Katrin Fundel, Ralf Zimmer
المصدر: Bioinformatics. 23:365-371
مصطلحات موضوعية: Statistics and Probability, Dependency (UML), Relation (database), Computer science, MEDLINE, Gene Expression, Information Storage and Retrieval, computer.software_genre, Biochemistry, Set (abstract data type), Protein Interaction Mapping, Molecular Biology, Natural Language Processing, Information retrieval, Parsing, business.industry, Proteins, Relationship extraction, Computer Science Applications, Term (time), Computational Mathematics, Computational Theory and Mathematics, Database Management Systems, Artificial intelligence, business, computer, Algorithms, Software, Natural language, Natural language processing
الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::30b5429ff90b66e86b0cf6cf92a4b9fdTest
https://doi.org/10.1093/bioinformatics/btl616Test