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المؤلفون: Kathryn E. Holt, Andrew J. Page, Silvia Argimón, Florian Marks, Jacqueline A. Keane, Khalil Abudahab, Anthony Underwood, Corin A. Yeats, Vanessa K. Wong, Se Eun Park, Richard Goater, David M. Aanensen, Satheesh Nair, Zoe A. Dyson, Leonor Sánchez-Busó, Gordon Dougan, SD Baker, Benjamin Taylor
المساهمون: Argimón, Silvia [0000-0002-2884-3857], Goater, Richard J. [0000-0001-9954-841X], Taylor, Benjamin [0000-0002-9105-7760], Sánchez-Busó, Leonor [0000-0002-4162-0228], Dyson, Zoe A. [0000-0002-8887-3492], Nair, Satheesh [0000-0002-7297-1485], Park, Se Eun [0000-0002-1632-3045], Marks, Florian [0000-0002-6043-7170], Apollo - University of Cambridge Repository, Goater, Richard J [0000-0001-9954-841X], Dyson, Zoe A [0000-0002-8887-3492]
المصدر: Nature Communications
Nature Communications, Vol 12, Iss 1, Pp 1-12 (2021)مصطلحات موضوعية: 0301 basic medicine, medicine.medical_specialty, 631/326/1762, Malawi, Genotype, Epidemiology, Science, Genomic data, 030106 microbiology, General Physics and Astronomy, 45/23, Drug resistance, Computational biology, Microbial Sensitivity Tests, Genome informatics, Salmonella typhi, Policy and public health in microbiology, Genome, Tanzania, General Biochemistry, Genetics and Molecular Biology, 03 medical and health sciences, Antibiotic resistance, Resource (project management), Bacterial Proteins, Computational platforms and environments, 631/114/2398, Drug Resistance, Multiple, Bacterial, medicine, Humans, Typhoid Fever, Multidisciplinary, 45, Geography, Public health, article, Membrane Transport Proteins, General Chemistry, Genomics, 692/700/478/174, Anti-Bacterial Agents, 030104 developmental biology, Salmonella enterica serovar Typhi, Mutation, 631/114/2785, Genome, Bacterial
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المؤلفون: Michel Doumith, Philip Ashton, Martin Day, Elizabeth de Pinna, Timothy J. Dallman, Flora J Stevens, Vivienne Do Nascimento, Neil Woodford, Katie L. Hopkins, Gauri Godbole, Claire Jenkins, Joanne Freedman, Satheesh Nair
المصدر: Journal of Antimicrobial Chemotherapy. 73:365-372
مصطلحات موضوعية: Male, 0301 basic medicine, Microbiology (medical), Genotype, medicine.drug_class, 030106 microbiology, Cephalosporin, Microbial Sensitivity Tests, Drug resistance, Biology, Salmonella typhi, complex mixtures, Microbiology, 03 medical and health sciences, Antibiotic resistance, Drug Resistance, Bacterial, Paratyphoid Fever, medicine, Humans, Pharmacology (medical), Typhoid Fever, Pharmacology, Whole Genome Sequencing, Salmonella paratyphi A, bacterial infections and mycoses, Antimicrobial, biology.organism_classification, Anti-Bacterial Agents, Ciprofloxacin, Infectious Diseases, Genes, Bacterial, Salmonella enterica, Mutation, bacteria, Female, medicine.drug
الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::3f54b218c06d6d0db96dbc0b5757c892Test
https://doi.org/10.1093/jac/dkx379Test -
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المؤلفون: Christopher D Stave, Satheesh Nair, Ankur Seth, Faisal Kamal, Aijaz Ahmed, Sanjaya K. Satapathy, Deepansh Gupta, George Cholankeril, Utkarsh Singh, Muhammad Ali Khan, Colin W Howden, Sehrish Kamal
المصدر: American Journal of Gastroenterology. 112:1495-1505
مصطلحات موضوعية: Liver Cirrhosis, 0301 basic medicine, medicine.medical_specialty, Pathology, Treatment outcome, Chronic liver disease, Gastroenterology, 03 medical and health sciences, 0302 clinical medicine, Internal medicine, medicine, Humans, Beneficial effects, Survival analysis, Hepatology, business.industry, Liver Diseases, Disease progression, medicine.disease, Survival Analysis, Observational Studies as Topic, Treatment Outcome, 030104 developmental biology, Meta-analysis, Chronic Disease, Disease Progression, 030211 gastroenterology & hepatology, Hydroxymethylglutaryl-CoA Reductase Inhibitors, Hepatic fibrosis, business, Liver Failure, Hepatic decompensation
الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f2ca892a7e1825fe19cae40fd6e3c143Test
https://doi.org/10.1038/ajg.2017.170Test -
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المؤلفون: Zoe A. Dyson, Danielle J. Ingle, Satheesh Nair, Joanne Freedman, Kathryn E. Holt, Timothy J. Dallman, Martin Day, Philip M. Ashton, Marie Anne Chattaway, Hassan Hartman
المصدر: PLoS Neglected Tropical Diseases
PLoS Neglected Tropical Diseases, Vol 13, Iss 9, p e0007620 (2019)
PLOS Neglected Tropical Diseasesمصطلحات موضوعية: 0301 basic medicine, Bacterial Diseases, Veterinary medicine, RC955-962, Prevalence, Drug resistance, Quinolones, Salmonella typhi, Pathology and Laboratory Medicine, Salmonella Typhi, Geographical Locations, 0302 clinical medicine, Salmonella, Arctic medicine. Tropical medicine, Surveys and Questionnaires, Mobile Genetic Elements, Epidemiology, Genotype, Medicine and Health Sciences, Typhoid, Public and Occupational Health, 0303 health sciences, Genomics, 3. Good health, Bacterial Pathogens, Ciprofloxacin, Geography, Infectious Diseases, Medical Microbiology, Public aspects of medicine, RA1-1270, Pathogens, Travel-Related Illness, medicine.drug, Research Article, medicine.medical_specialty, Asia, 030231 tropical medicine, Microbial Sensitivity Tests, Biology, Microbiology, Typhoid fever, 03 medical and health sciences, Antibiotic resistance, Genetic Elements, Enterobacteriaceae, Environmental health, Microbial Control, Drug Resistance, Bacterial, medicine, Genetics, Humans, Point Mutation, Typhoid Fever, Genotyping, Microbial Pathogens, 030304 developmental biology, Pharmacology, Whole Genome Sequencing, Bacteria, 030306 microbiology, Public health, Public Health, Environmental and Occupational Health, Organisms, Transposable Elements, Biology and Life Sciences, medicine.disease, Multiple drug resistance, 030104 developmental biology, Parasitology, People and Places, Africa, Mutation, Antimicrobial Resistance
وصف الملف: application/pdf
الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::db9b9387c31059798299e9bef289cc56Test
https://pubmed.ncbi.nlm.nih.gov/31513580Test -
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المؤلفون: Chiranjeevi Gadiparthi, Aijaz Ahmed, Benedict Maliakkal, George Cholankeril, Alice E. Toll, Satheesh Nair, Brittany B. Dennis, Donghee Kim, Andrew A. Li, Sanjaya K. Satapathy
المصدر: Scientific Reports
Scientific Reports, Vol 9, Iss 1, Pp 1-7 (2019)مصطلحات موضوعية: 0301 basic medicine, Male, medicine.medical_specialty, Databases, Factual, Waiting Lists, medicine.medical_treatment, lcsh:Medicine, Kaplan-Meier Estimate, Liver transplantation, Independent predictor, Article, End Stage Liver Disease, 03 medical and health sciences, Liver disease, 0302 clinical medicine, Internal medicine, Medicine, Humans, Decompensation, Registries, lcsh:Science, Liver diseases, Proportional Hazards Models, Multidisciplinary, business.industry, lcsh:R, Middle Aged, medicine.disease, Hepatitis C, Pre operative, United States, Liver Transplantation, body regions, 030104 developmental biology, Increased risk, Risk factors, Liver, Preoperative Period, lcsh:Q, Female, National registry, business, 030217 neurology & neurosurgery
الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::32550751b2ed5419b53d4ae57e824f4bTest
https://pubmed.ncbi.nlm.nih.gov/31165776Test -
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المؤلفون: Muhammad Khalid Saleem, Dania K. Saeed, Farah Naz Qamar, Stephen Baker, Gordon Dougan, Shahida Qureshi, Sadia Shakoor, Kim Judge, Timothy J. Dallman, Zahra Hasan, Mohammad Tahir Yousafzai, Rumina Hasan, Vanessa K. Wong, Andrew J. Page, Ghazala Shaheen, Elizabeth J. Klemm, Satheesh Nair
المساهمون: Baker, Stephen [0000-0003-1308-5755], Dougan, Gordon [0000-0003-0022-965X], Apollo - University of Cambridge Repository
المصدر: mBio
mBio, Vol 9, Iss 1, p e00105-18 (2018)
mBio, Vol 9, Iss 1 (2018)مصطلحات موضوعية: 0301 basic medicine, chloramphenicol, Salmonella, antibiotic resistance, medicine.drug_class, Typhi, 030106 microbiology, Antibiotics, ceftriaxone resistance, Drug resistance, Biology, medicine.disease_cause, Microbiology, complex mixtures, Typhoid fever, 03 medical and health sciences, Plasmid, Antibiotic resistance, Anti-Infective Agents, Drug Resistance, Multiple, Bacterial, Virology, Ampicillin, medicine, Humans, Pakistan, Typhoid Fever, Whole Genome Sequencing, Chloramphenicol, Salmonella typhi, medicine.disease, bacterial infections and mycoses, QR1-502, Cephalosporins, 3. Good health, Anti-Bacterial Agents, 030104 developmental biology, Haplotypes, Commentary, typhoid, Fluoroquinolones, Plasmids, medicine.drug, Research Article
وصف الملف: application/pdf
الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0e69b07c6c3e49894903da54cb55fac0Test
http://europepmc.org/articles/PMC5821095Test -
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المؤلفون: Romain Pizzi, Shinto K. John, Philip M. Ashton, Lydia H. V. Franklinos, Elizabeth de Pinna, Clare Wend-Hansen, Satheesh Nair, Julia Rodriguez-Ramos Fernandez, Becki Lawson, Andrew A. Cunningham, Shaheed K. Macgregor, Alejandro Núñez
المصدر: Scientific Reports
Scientific Reports, Vol 8, Iss 1, Pp 1-11 (2018)مصطلحات موضوعية: 0301 basic medicine, Male, Genotype, Salmonella enteritidis, 030106 microbiology, Population, Zoology, lcsh:Medicine, Salmonella infection, Disease Vectors, Article, 03 medical and health sciences, Feces, Zoonoses, medicine, Animals, Humans, education, Clade, lcsh:Science, Hedgehog, Histiocytic Necrotizing Lymphadenitis, Phylogeny, education.field_of_study, Multidisciplinary, Erinaceus, biology, Zoonotic Infection, lcsh:R, Infant, Newborn, Infant, biology.organism_classification, medicine.disease, United Kingdom, Bacterial Typing Techniques, 030104 developmental biology, Hedgehogs, Child, Preschool, Salmonella Infections, Multilocus sequence typing, lcsh:Q, Female, Salmonella Phages, Multilocus Sequence Typing
الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::864ba3ae25be2b3dcd83f6d2eabd6dabTest
http://europepmc.org/articles/PMC5799193Test -
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المؤلفون: Hans K. Stenøien, Zhemin Zhou, Christopher Quince, Axel Christophersen, Stian S. Hamre, Martin J. Sergeant, Sherwood R. Casjens, M. Thomas P. Gilbert, Simon Y. W. Ho, Gemma C. Langridge, Nabil-Fareed Alikhan, Inge Lundstrøm, Anna K. Fotakis, François-Xavier Weill, Nicholas R. Thomson, Sebastián Duchêne, Alicia Tran-Dien, Satheesh Nair, Mark Achtman
المساهمون: Warwick Medical School, University of Warwick [Coventry], University of Copenhagen = Københavns Universitet (KU), Bactéries pathogènes entériques (BPE), Institut Pasteur [Paris], University of Melbourne, The Wellcome Trust Sanger Institute [Cambridge], University of East Anglia [Norwich] (UEA), Public Health England [London], Norwegian University of Science and Technology [Trondheim] (NTNU), Norwegian University of Science and Technology (NTNU), University of Bergen (UiB), University of Utah School of Medicine [Salt Lake City], School of Environmental and Life Sciences - SELS (Callaghan, Australia), University of Newcastle [Australia] (UoN), EnteroBase (BBSRCBB/L020319/1) was developed by N.-F.A., M.J.S., and Z.Z. (equal contributions) under guidance by M.A. Additional grant support was from the Wellcome Trust (202792/Z/16/Z), Medical Research Council (MR/M50161X/1), Grundforksningfonden (DNRF 94) and Lundbeckfonden (R52-5062), the French government (ANR-10-LABX-62-IBEID), the Institut Pasteur, Santé Publique France, and Fondation Le Roch-Les Mousquertaires., ANR-10-LABX-0062,IBEID,Integrative Biology of Emerging Infectious Diseases(2010), University of Copenhagen = Københavns Universitet (UCPH), Institut Pasteur [Paris] (IP), University of Newcastle [Callaghan, Australia] (UoN)
المصدر: Current Biology
Zhou, Z, Lundstrøm, I K C, Tran-Dien, A, Duchêne, S, Alikhan, N-F, Sergeant, M J, Langridge, G, Fotakis, A K, Nair, S, Stenøien, H K, Hamre, S S, Casjens, S, Christophersen, A, Quince, C, Thomson, N R, Weill, F-X, Ho, S Y W, Gilbert, T & Achtman, M 2018, ' Pan-genome Analysis of Ancient and Modern Salmonella enterica Demonstrates Genomic Stability of the Invasive Para C Lineage for Millennia ', Current Biology, vol. 28, no. 15, pp. 2420-2429 . https://doi.org/10.1016/j.cub.2018.05.058Test
Current Biology-CB
Current Biology-CB, Elsevier, 2018, 28 (15), pp.2420-2428.e10. ⟨10.1016/j.cub.2018.05.058⟩
Current Biology-CB, 2018, 28 (15), pp.2420-2428.e10. ⟨10.1016/j.cub.2018.05.058⟩مصطلحات موضوعية: 0106 biological sciences, 0301 basic medicine, Serotype, DNA, Bacterial, Salmonella, Lineage (genetic), Genomic Islands, population genomics, enteric fever, host jump, medicine.disease_cause, 010603 evolutionary biology, 01 natural sciences, General Biochemistry, Genetics and Molecular Biology, Genomic Instability, Article, 03 medical and health sciences, paratyphoid fever, medicine, Humans, historical infections, DNA, Ancient, Typhoid Fever, Clade, QH426, Salmonella paratyphi C, biology, Ancient DNA, Norway, Paratyphoid fever, Salmonella enterica, biology.organism_classification, medicine.disease, genomic stability, [SDV.MP.BAC]Life Sciences [q-bio]/Microbiology and Parasitology/Bacteriology, Virology, 3. Good health, 030104 developmental biology, tMRCA of bacterial pathogens, Female, pan-genome, General Agricultural and Biological Sciences, RA
وصف الملف: application/pdf
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https://pubmed.ncbi.nlm.nih.gov/30033331Test -
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المؤلفون: Janet Bale, François-Xavier Weill, Elizabeth M DePinna, Tansy Peters, Danièle Meunier, Satheesh Nair
المساهمون: Public Health England [London], Centre National de Référence - National Reference Center Escherichia coli, Shigella et Salmonella (CNR-ESS), Institut Pasteur [Paris], Institut Pasteur [Paris] (IP)
المصدر: Journal of Medical Microbiology
Journal of Medical Microbiology, Society for General Microbiology, 2016, 65 (10), pp.1074-1078. ⟨10.1099/jmm.0.000325⟩
Journal of Medical Microbiology, 2016, 65 (10), pp.1074-1078. ⟨10.1099/jmm.0.000325⟩مصطلحات موضوعية: 0301 basic medicine, Microbiology (medical), Serotype, Salmonella, [SDV]Life Sciences [q-bio], 030106 microbiology, Biology, medicine.disease_cause, Microbiology, Genome, DNA sequencing, 03 medical and health sciences, symbols.namesake, medicine, Humans, Typing, Phylogeny, Genetics, Whole genome sequencing, Sanger sequencing, High-Throughput Nucleotide Sequencing, General Medicine, Bacterial Typing Techniques, 3. Good health, England, Salmonella Infections, symbols, Multilocus sequence typing, [SDV.SPEE]Life Sciences [q-bio]/Santé publique et épidémiologie, Genome, Bacterial
الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a865fa8de57985004c1d9d7cc1c83984Test
https://hal-pasteur.archives-ouvertes.fr/pasteur-01421027Test -
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المؤلفون: Alison E. Mather, José A. Chabalgoity, Myron M. Levine, Robert A. Kingsley, Tom J. Humphrey, Jan Jacobs, Octavie Lunguya, Melita A. Gordon, Gemma C. Langridge, Robert S. Onsare, Timothy J. Dallman, Theresa Feltwell, Dean Everett, Milagritos D. Tapia, Nicholas A. Feasey, James Hadfield, Lizeth Lacharme-Lora, Martin Aslett, François-Xavier Weill, Calman A. MacLennan, Robert S. Heyderman, Chisomo L. Msefula, Christopher M. Parry, Prerak T. Desai, Paul Wigley, J.S. Cheesbrough, Simon Le Hello, Gordon Dougan, Lars Barquist, Julian Parkhill, Satheesh Nair, Neil French, Karen H. Keddy, Samuel Kariuki, Katie L. Hopkins, Michael McClelland, Josefina Campos, Tristan A Cogan, Kristin Bornstein, Laura Betancor, Maria Fookes, Simon R. Harris, Xiangyu Deng, Nicholas R. Thomson, Samba O. Sow, Sharon M. Tennant, Anthony M. Smith
المساهمون: Liverpool School of Tropical Medicine (LSTM), The Wellcome Trust Sanger Institute [Cambridge], University of Liverpool, University of the Witwatersrand [Johannesburg] (WITS), National Institute for Communicable Diseases [Johannesburg] (NICD), Public Health England [London], Catholic University of Leuven - Katholieke Universiteit Leuven (KU Leuven), Institute of Tropical Medicine [Antwerp] (ITM), Centers for Disease Control and Prevention [Atlanta] (CDC), Centers for Disease Control and Prevention, Centre National de Référence - National Reference Center Escherichia coli, Shigella et Salmonella (CNR-ESS), Institut Pasteur [Paris] (IP), Plymouth University, University of California [Irvine] (UC Irvine), University of California (UC), London School of Hygiene and Tropical Medicine (LSHTM), Nagasaki University, Administración Nacional de Laboratorios e Institutos de Salud ‘Carlos Malbran' (ANLIS), Institut National de Recherche Biomédicale [Kinshasa] (INRB), University of Kinshasa (UNIKIN), University of Bristol [Bristol], University of Maryland School of Medicine, University of Maryland System, Centre pour le Développement des Vaccins [Mali], Institute of Food Research [Norwich], Biotechnology and Biological Sciences Research Council (BBSRC), University College of London [London] (UCL), The authors from the Institut Pasteur were funded by the Institut Pasteur, by the Institut de Veille Sanitaire, and by the French government ‘Investissement d’Avenir’ program (Integrative Biology of Emerging Infectious Diseases Laboratory of Excellence, grant ANR-10-LABX-62-IBEID). J.J. was supported by the antibiotic resistance surveillance project in the Democratic Republic of the Congo, funded by Project 2.01 of the Third Framework Agreement between the Belgian Directorate General of Development Cooperation and the Institute of Tropical Medicine (Antwerp, Belgium). S.K. was supported by NIH grant R01 AI099525-02. A.E.M. was supported by Wellcome Trust grant 098051 while at the Wellcome Trust Sanger Institute and by Biotechnology and Biological Sciences Research Council grant BB/M014088/1 at the University of Cambridge., ANR-10-LABX-0062,IBEID,Integrative Biology of Emerging Infectious Diseases(2010), Institut Pasteur [Paris], University of California [Irvine] (UCI), University of California, Parkhill, Julian [0000-0002-7069-5958], Dougan, Gordon [0000-0003-0022-965X], Apollo - University of Cambridge Repository
المصدر: Nature genetics, vol 48, iss 10
Nature Genetics
Feasey, N A, Hadfield, J, Keddy, K H, Dallman, T J, Jacobs, J, Deng, X, Wigley, P, Barquist Barquist, L, Langridge, G C, Feltwell, T, Mather, A E, Fookes, M, Aslett, M, Msefula, C, Kariuki, S, Maclennan, C A, Onsare, R S, Weill, F-X, Le Hello, S, McClelland, M, Desai, P, Parry, C M, Cheesbrough, J, French, N, Campos, J, Chabalgoity, J A, Betancor, L, Hopkins, K L, Nair, S, Lunguya, O, Cogan, T A, Tapia, M D, Sow, S O, Tennant, S M, Bornstein, K, Levine, M M, Everett, D B, Kingsley, R A, Parkhill, J, Dougan, G, Gordon, M A & Thomson, N R 2016, ' Distinct Salmonella Enteritidis lineages associated with enterocolitis in high-income settings and invasive disease in low-income settings ', Nature Genetics, vol. 48, no. 10, pp. 1211-1217 . https://doi.org/10.1038/ng.3644Test
Nature genetics
Nature Genetics, 2016, 48 (10), pp.1211-7. ⟨10.1038/ng.3644⟩
Feasey, N A, Hadfield, J, Keddy, K H, Dallman, T J, Jacobs, J, Deng, X, Wigley, P, Barquist, L, Langridge, G C, Feltwell, T, Harris, S R, Mather, A E, Fookes, M, Aslett, M, Msefula, C, Kariuki, S, Maclennan, C A, Onsare, R S, Weill, F-X, Le Hello, S, Smith, A M, McClelland, M, Desai, P, Parry, C M, Cheesbrough, J, French, N, Campos, J, Chabalgoity, J A, Betancor, L, Hopkins, K L, Nair, S, Humphrey, T J, Lunguya, O, Cogan, T A, Tapia, M D, Sow, S O, Tennant, S M, Bornstein, K, Levine, M M, Lacharme-Lora, L, Everett, D B, Kingsley, R A, Parkhill, J, Heyderman, R S, Dougan, G, Gordon, M A & Thomson, N R 2016, ' Distinct Salmonella Enteritidis lineages associated with enterocolitis in high-income settings and invasive disease in low-income settings ', Nature Genetics, vol. 48, no. 10, pp. 1211-1217 . https://doi.org/10.1038/ng.3644Test
Nature Genetics, Nature Publishing Group, 2016, 48 (10), pp.1211-7. ⟨10.1038/ng.3644⟩
Feasey, NA; Hadfield, J; Keddy, KH; Dallman, TJ; Jacobs, J; Deng, X; et al.(2016). Distinct Salmonella Enteritidis lineages associated with enterocolitis in high-income settings and invasive disease in low-income settings. NATURE GENETICS, 48(10), 1211-1217. doi: 10.1038/ng.3644. UC Irvine: Retrieved from: http://www.escholarship.org/uc/item/94r1q0g5Testمصطلحات موضوعية: 0301 basic medicine, Serotype, Salmonella, bacteraemia, [SDV]Life Sciences [q-bio], Adaptation, Biological, medicine.disease_cause, wc_269, Medical and Health Sciences, Clade, Genetics, Enterocolitis, Genome, Research Support, Non-U.S. Gov't, Bacterial, Genomics, Biological Sciences, global, 3. Good health, qw_51, Salmonella Infections, Income, Female, Host adaptation, medicine.symptom, gastroenteritis, Microbial genetics, Sequence Analysis, Plasmids, Salmonella enteritidis, Biology, Article, 03 medical and health sciences, wi_140, Research Support, N.I.H., Extramural, Journal Article, medicine, Animals, Humans, Adaptation, Epidemics, Prophage, Africa South of the Sahara, Poultry Diseases, qw_138, multidrug resistant, DNA, Sequence Analysis, DNA, Biological, 030104 developmental biology, [SDV.SPEE]Life Sciences [q-bio]/Santé publique et épidémiologie, Bacterial infection, Chickens, Genome, Bacterial, Developmental Biology
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https://ora.ox.ac.uk/objects/uuid:7dfb5fb3-3d6a-4f97-bdd4-344a4925e086Test