Investigation of putative tumor suppressors on chromosome 16q in nasopharyngeal carcinoma.
العنوان: | Investigation of putative tumor suppressors on chromosome 16q in nasopharyngeal carcinoma. |
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مرشدي الرسالة: | Hui, Wai Ying., Chinese University of Hong Kong Graduate School. Division of Anatomical and Cellular Pathology. |
سنة النشر: | 2003 |
المجموعة: | The Chinese University of Hong Kong |
Original Material: | cuhk:324496 |
مصطلحات موضوعية: | Nasopharyngeal Neoplasms, genetics, Chromosomes, Human, Pair 16, Chromosomes, Human, Pair 14, Genes, Tumor Suppressor |
الوصف: | Hui Wai Ying. Thesis (M.Phil.)--Chinese University of Hong Kong, 2003. Includes bibliographical references (leaves 158-189). in English and Chinese. Acknowledgements List of Tables List of Figures Table of Contents Chapter Chapter I: --- Introduction --- p.1 Chapter I. --- Aim of Study --- p.1 Chapter II. --- Literature Review --- p.3 Chapter 1. --- Background --- p.3 Chapter A. --- Epidemiology --- p.3 Chapter B. --- Histopathology --- p.3 Chapter C. --- Etiology --- p.4 Chapter i. --- Environmental Factors --- p.5 Chapter ii. --- Epstein-Barr Virus (EBV) Infection --- p.6 Chapter iii. --- Genetic Factors --- p.9 Chapter 2. --- Molecular Genetics of NPC --- p.11 Chapter A. --- Genome-Wide Studies --- p.11 Chapter i. --- Comparative Genomic Hybridization (CGH) --- p.11 Chapter ii. --- Loss of Heterozygosity (LOH) Studies --- p.12 Chapter iii. --- Homozygous Deletion Study --- p.12 Chapter B. --- NPC-related Oncogenes and Tumor Suppressor Genes --- p.13 Chapter i. --- Oncogenes --- p.13 Chapter ii. --- Tumor Suppressor Genes --- p.14 Chapter 3. --- Chromosome 14q and NPC --- p.19 Chapter A. --- Tumor Suppressor Loci and Cancer-Related Genes on Chromosome14q --- p.20 Chapter i. --- Tumor Suppressor Loci on Chromosome 14q --- p.20 Chapter ii. --- Cancer-Related Genes on Chromosome 14q --- p.26 Chapter 4. --- Chromosome 16q and NPC --- p.28 Chapter A. --- Tumor Suppressor Loci and Candidate Tumor Suppressor genes on Chromosome16q --- p.28 Chapter i. --- Tumor Suppressor Loci on Chromosome 16q --- p.28 Chapter ii. --- Metastasis Suppressor Loci on Chromosome 16q --- p.34 Chapter iii. --- Candidate Tumor Suppressor Genes on Chromosome 16q --- p.34 Chapter Chapter II: --- Materials and Methods --- p.40 Chapter I. --- Cell Lines and Xenografts --- p.40 Chapter 1. --- Cell Lines --- p.40 Chapter 2. --- Xenografts --- p.41 Chapter 3. --- DNA Extraction --- p.42 Chapter II. --- Patients and Biopsy Specimens --- p.44 Chapter 1. --- Manual Microdissection --- p.44 Chapter 2. --- Laser Captured Microdissection (LCM) --- p.46 Chapter 3. --- DNA Extraction --- p.46 Chapter III. --- Comprehensive Screening for Homozygous Deletion Regions on Chromosomes 14q32.12-32.33 and 16q23.1-24.3 in Human Cancers --- p.48 Chapter 1. --- DNA of Human Cancer Cell Lines --- p.48 Chapter 2. --- Sequence-Tagged Sites (STS) Markers --- p.48 Chapter 3. --- Polymerase Chain Reaction (PCR) --- p.49 Chapter IV ---. Investigation of Inactivation of Potential Tumor Suppressor Genes on Chromosome 14q32.12-32.33 and 16q23.1-24.3 --- p.58 Chapter 1. --- Detection of Homozygous Deletion --- p.58 Chapter 2. --- Expression Analysis --- p.58 Chapter A. --- RNA Extraction --- p.58 Chapter B. --- Reverse-Transcription (RT) PCR --- p.61 Chapter i. --- DNase I Digestion --- p.62 Chapter ii. --- First-strand cDNA Synthesis and RNase Digestion --- p.62 Chapter iii. --- Reverse-Transcription (RT)-PCR --- p.63 Chapter C. --- Real-Time RT PCR --- p.63 Chapter 3. --- Methylation Analysis --- p.68 Chapter A. --- Sodium Bisulfite Modification --- p.68 Chapter B. --- Methylation-Specific PCR (MSP) --- p.69 Chapter C. --- Bisulfite Sequencing --- p.70 Chapter D. --- Combined Bisulfite Restriction Analysis (COBRA) --- p.75 Chapter E. --- 5 -aza-2' -deoxycytidine Treatment --- p.76 Chapter ChapterIII: --- Results --- p.78 Chapter I. --- Comprehensive Screening for Homozygous Deletion Regions in Human Cancers --- p.78 Chapter 1. --- Chromosome 14q32.12-3233 --- p.78 Chapter 2. --- Chromosome 16q23.1-243 --- p.79 Chapter II. --- Investigation of Inactivation of Potential Tumor Suppressor Genes in NPC --- p.86 Chapter 1. --- Chromosome 14q --- p.86 Chapter A. --- "WW Domain-Containing Protein, 45-kD (WW45)" --- p.86 Chapter B. --- Apoptosis Stimulating Protein of p53(ASPP1) --- p.88 Chapter 2. --- Chromosome 16q --- p.92 Chapter A. --- WW Domain-Containing Oxidoreductase (WWOX) --- p.92 Chapter i. --- Homozygous Deletion Screening of WWOX --- p.92 Chapter ii. --- Expression of Aberrant Splicing Transcripts of WWOX in NPC --- p.94 Chapter iii. --- Sequencing of WWOX Aberrant Transcripts --- p.95 Chapter iv. --- Quantitative Analysis of WWOX Transcripts in NPC --- p.95 Chapter v. --- Methylation Analysis --- p.99 Chapter B. --- H-Cadherin (CDH13) --- p.102 Chapter i. --- Analysis of H-cadherin Deletion on Cancer Cell Lines and Xenografts --- p.102 Chapter ii. --- Expression Analysis of H-Cadherin by RT-PCR and Real-Time RT-PCR --- p.102 Chapter iii. --- Analysis of Promoter Hypermethylation by Methylation-Specific PCR (MSP) and Bisulfite Sequencing in NPC Cell Lines and Xenografts --- p.104 Chapter iv. --- Demethylation Study of H-Cadherin in C666-1 Cell Line --- p.105 Chapter v. --- Methylation Analysis of H-Cadherin in Primary Tumors --- p.105 Chapter vi. --- Methylation Analysis of H-Cadherin in Human Cancer Cell Lines --- p.106 Chapter C. --- Myeloid Translocation Gene on Chromosome 16 (MTG16) --- p.113 Chapter i. --- Deletion Analysis of MTG16 in Cancer Cell Lines and Xenografts --- p.113 Chapter ii. --- Differential Expression of MTG16a and MTG16b Transcripts in NPC Cell Lines and Xenografts --- p.113 Chapter iii. --- Methylation Analysis of MTG16b in NPC Cell Lines and Xenografts --- p.118 Chapter iv. --- Sequencing of MTGl 6b RT-PCR Products --- p.119 Chapter v. --- Demethylation Study of MTG16b in HK-1 Cell Line --- p.119 Chapter vi. --- Promoter Methylation Analysis of MTG16b by MSP in Primary NPC and Cancer Cell Lines --- p.120 Chapter Chapter IV: --- Discussion --- p.124 Chapter I. --- Comprehensive Homozygous Deletion Screening of Chromosomes 14q32.12-32.33 and 16q23.1-24.3 in Human Cancer Cell Lines and Xenografts --- p.124 Chapter II. --- Investigation of Candidate Tumor Suppressor Genes on Chromosome 14q in NPC --- p.128 Chapter III. --- Alterations of Candidate Tumor Suppressor Genes on Chromosome 16q in NPC --- p.133 Chapter 1. --- Expression of Aberrant Transcripts of WWOX in NPC --- p.133 Chapter 2. --- Methylation-Associated Silencing of H-Cadherin and MTG16b in NPC --- p.140 Chapter Chapter V: --- Conclusion --- p.154 Chapter Chapter VI: --- References --- p.158 |
Original Identifier: | oai:cuhk-dr:cuhk_324496 |
نوع الوثيقة: | Bibliography |
وصف الملف: | print; 189 leaves : ill. (some col.) ; 30 cm. |
اللغة: | Chinese English |
الإتاحة: | http://library.cuhk.edu.hk/record=b5891615Test http://repository.lib.cuhk.edu.hk/en/item/cuhk-324496Test |
حقوق: | Use of this resource is governed by the terms and conditions of the Creative Commons “Attribution-NonCommercial-NoDerivatives 4.0 International” License (http://creativecommons.org/licenses/by-nc-nd/4.0Test/) |
رقم الانضمام: | edsndl.cuhk.edu.hk.oai.cuhk.dr.cuhk.324496 |
قاعدة البيانات: | Networked Digital Library of Theses & Dissertations |
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