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1دورية أكاديمية
المؤلفون: Schorn, Michelle A, Verhoeven, Stefan, Ridder, Lars, Huber, Florian, Acharya, Deepa D, Aksenov, Alexander A, Aleti, Gajender, Moghaddam, Jamshid Amiri, Aron, Allegra T, Aziz, Saefuddin, Bauermeister, Anelize, Bauman, Katherine D, Baunach, Martin, Beemelmanns, Christine, Beman, J Michael, Berlanga-Clavero, María Victoria, Blacutt, Alex A, Bode, Helge B, Boullie, Anne, Brejnrod, Asker, Bugni, Tim S, Calteau, Alexandra, Cao, Liu, Carrión, Víctor J, Castelo-Branco, Raquel, Chanana, Shaurya, Chase, Alexander B, Chevrette, Marc G, Costa-Lotufo, Leticia V, Crawford, Jason M, Currie, Cameron R, Cuypers, Bart, Dang, Tam, de Rond, Tristan, Demko, Alyssa M, Dittmann, Elke, Du, Chao, Drozd, Christopher, Dujardin, Jean-Claude, Dutton, Rachel J, Edlund, Anna, Fewer, David P, Garg, Neha, Gauglitz, Julia M, Gentry, Emily C, Gerwick, Lena, Glukhov, Evgenia, Gross, Harald, Gugger, Muriel, Guillén Matus, Dulce G, Helfrich, Eric JN, Hempel, Benjamin-Florian, Hur, Jae-Seoun, Iorio, Marianna, Jensen, Paul R, Kang, Kyo Bin, Kaysser, Leonard, Kelleher, Neil L, Kim, Chung Sub, Kim, Ki Hyun, Koester, Irina, König, Gabriele M, Leao, Tiago, Lee, Seoung Rak, Lee, Yi-Yuan, Li, Xuanji, Little, Jessica C, Maloney, Katherine N, Männle, Daniel, Martin H., Christian, McAvoy, Andrew C, Metcalf, Willam W, Mohimani, Hosein, Molina-Santiago, Carlos, Moore, Bradley S, Mullowney, Michael W, Muskat, Mitchell, Nothias, Louis-Félix, O’Neill, Ellis C, Parkinson, Elizabeth I, Petras, Daniel, Piel, Jörn, Pierce, Emily C, Pires, Karine, Reher, Raphael, Romero, Diego, Roper, M Caroline, Rust, Michael, Saad, Hamada, Saenz, Carmen, Sanchez, Laura M, Sørensen, Søren Johannes, Sosio, Margherita, Süssmuth, Roderich D, Sweeney, Douglas, Tahlan, Kapil, Thomson, Regan J, Tobias, Nicholas J, Trindade-Silva, Amaro E, van Wezel, Gilles P
المصدر: Nature Chemical Biology. 17(4)
مصطلحات موضوعية: Human Genome, Genetics, Biotechnology, Generic health relevance, Data Mining, Databases, Factual, Genomics, Metabolomics, Medicinal and Biomolecular Chemistry, Biochemistry and Cell Biology, Biochemistry & Molecular Biology
وصف الملف: application/pdf
الوصول الحر: https://escholarship.org/uc/item/4h57c4m0Test
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2دورية أكاديمية
المؤلفون: Sundararajan, Kalaivani, Georgievska, Sonja, te Lindert, Bart H.W., Gehrman, Philip R., Ramautar, Jennifer, Mazzotti, Diego R., Sabia, Séverine, Weedon, Michael N., van Someren, Eus J.W., Ridder, Lars, Wang, Jian, van Hees, Vincent T.
المصدر: Sundararajan , K , Georgievska , S , te Lindert , B H W , Gehrman , P R , Ramautar , J , Mazzotti , D R , Sabia , S , Weedon , M N , van Someren , E J W , Ridder , L , Wang , J & van Hees , V T 2021 , ' Sleep classification from wrist-worn accelerometer data using random forests ' , Scientific Reports , vol. 11 , no. 1 , 24 . https://doi.org/10.1038/s41598-020-79217-xTest
الإتاحة: https://doi.org/10.1038/s41598-020-79217-xTest
https://research.vumc.nl/en/publications/040b1208-baf1-4d7f-8a07-e045fb3a72ceTest
http://www.scopus.com/inward/record.url?scp=85098993077&partnerID=8YFLogxKTest -
3دورية أكاديمية
المؤلفون: Richardson, Robin A., Celebi, Remzi, Van Der Burg, Sven, Smits, Djura, Ridder, Lars, Dumontier, Michel, Kuhn, Tobias
المصدر: Richardson , R A , Celebi , R , Van Der Burg , S , Smits , D , Ridder , L , Dumontier , M & Kuhn , T 2021 , User-friendly Composition of FAIR Workflows in a Notebook Environment . in K-CAP 2021 : Proceedings of the 11th Knowledge Capture Conference . Association for Computing Machinery, Inc , pp. 1-8 , 11th ACM International Conference on Knowledge Capture, K-CAP 2021 , Virtual, Online , United States , 2/12/21 . https://doi.org/10.1145/3460210.3493546Test
مصطلحات موضوعية: fair, nanopublications, notebook environments, workflows
العلاقة: https://research.vu.nl/en/publications/0459756e-4373-4b3c-92f3-ec23041c11c0Test; urn:ISBN:9781450384575
الإتاحة: https://doi.org/10.1145/3460210.3493546Test
https://research.vu.nl/en/publications/0459756e-4373-4b3c-92f3-ec23041c11c0Test
https://hdl.handle.net/1871.1/0459756e-4373-4b3c-92f3-ec23041c11c0Test
http://www.scopus.com/inward/record.url?scp=85120888082&partnerID=8YFLogxKTest -
4دورية أكاديمية
المؤلفون: Huber, Florian, Ridder, Lars, Verhoeven, Stefan, Spaaks, Jurriaan H., Diblen, Faruk, Rogers, Simon, Van Der Hooft, Justin J.J.
المصدر: PLoS Computational Biology 17 (2021) 2 ; ISSN: 1553-734X
مصطلحات موضوعية: Life Science
وصف الملف: application/pdf
العلاقة: https://edepot.wur.nl/545599Test; https://research.wur.nl/en/publications/spec2vec-improved-mass-spectral-similarity-scoring-through-learniTest
الإتاحة: https://doi.org/10.1371/JOURNAL.PCBI.1008724Test
https://research.wur.nl/en/publications/spec2vec-improved-mass-spectral-similarity-scoring-through-learniTest -
5دورية أكاديمية
المصدر: Journal of Cheminformatics 13 (2021) 1 ; ISSN: 1758-2946
مصطلحات موضوعية: Deep learning, Mass spectrometry, Metabolomics, Spectral similarity measure, Supervised machine learning
وصف الملف: application/pdf
العلاقة: https://edepot.wur.nl/557087Test; https://research.wur.nl/en/publications/ms2deepscore-a-novel-deep-learning-similarity-measure-to-compareTest-
الإتاحة: https://doi.org/10.1186/s13321-021-00558-4Test
https://research.wur.nl/en/publications/ms2deepscore-a-novel-deep-learning-similarity-measure-to-compareTest- -
6دورية أكاديمية
المؤلفون: Schorn, Michelle A., Verhoeven, Stefan, Ridder, Lars, Huber, Florian, Acharya, Deepa D., Aksenov, Alexander A., Aleti, Gajender, Moghaddam, Jamshid Amiri, Aron, Allegra T., Aziz, Saefuddin, Bauermeister, Anelize, Bauman, Katherine D., Baunach, Martin, Beemelmanns, Christine, Beman, J. Michael, Berlanga-Clavero, María Victoria, Blacutt, Alex A., Bode, Helge B., Boullie, Anne, Brejnrod, Asker, Bugni, Tim S., Calteau, Alexandra, Cao, Liu, Carrión, Víctor J., Castelo-Branco, Raquel, Chanana, Shaurya, Chase, Alexander B., Chevrette, Marc G., Costa-Lotufo, Leticia V., Crawford, Jason M., Currie, Cameron R., Cuypers, Bart, Dang, Tam, de Rond, Tristan, Demko, Alyssa M., Dittmann, Elke, Du, Chao, Drozd, Christopher, Dujardin, Jean-Claude, Dutton, Rachel J., Edlund, Anna, Fewer, David P., Garg, Neha, Gauglitz, Julia M., Gentry, Emily C., Gerwick, Lena, Glukhov, Evgenia, Gross, Harald, Gugger, Muriel, Guillén Matus, Dulce G., Helfrich, Eric J. N., Hempel, Benjamin-Florian, Hur, Jae-Seoun, Iorio, Marianna, Jensen, Paul R., Kang, Kyo Bin, Kaysser, Leonard, Kelleher, Neil L., Kim, Chung Sub, Kim, Ki Hyun, Koester, Irina, König, Gabriele M., Leao, Tiago, Lee, Seoung Rak, Lee, Yi-Yuan, Li, Xuanji, Little, Jessica C., Maloney, Katherine N., Männle, Daniel, Martin H., Christian, McAvoy, Andrew C., Metcalf, Willam W., Mohimani, Hosein, Molina-Santiago, Carlos, Moore, Bradley S., Mullowney, Michael W., Muskat, Mitchell, Nothias, Louis-Félix, O'Neill, Ellis C., Parkinson, Elizabeth I., Petras, Daniel, Piel, Jörn, Pierce, Emily C., Pires, Karine, Reher, Raphael, Romero, Diego, Roper, M. Caroline, Rust, Michael, Saad, Hamada, Saenz, Carmen, Sanchez, Laura M., Sørensen, Søren Johannes, Sosio, Margherita, Süssmuth, Roderich D., Sweeney, Douglas, Tahlan, Kapil, Thomson, Regan J., Tobias, Nicholas J., Trindade-Silva, Amaro E., van Wezel, Gilles P., Wang, Mingxun, Weldon, Kelly C., Zhang, Fan, Ziemert, Nadine, Duncan, Katherine R., Crüsemann, Max, Rogers, Simon, Dorrestein, Pieter C., Medema, Marnix H., van der Hooft, Justin J. J.
مصطلحات موضوعية: Genetics
وصف الملف: text
العلاقة: https://strathprints.strath.ac.uk/77536/1/Schorn_etal_NCB_2021_A_community_resource_for_paired_genomic_and_metabolomic.pdfTest; Schorn, Michelle A. and Verhoeven, Stefan and Ridder, Lars and Huber, Florian and Acharya, Deepa D. and Aksenov, Alexander A. and Aleti, Gajender and Moghaddam, Jamshid Amiri and Aron, Allegra T. and Aziz, Saefuddin and Bauermeister, Anelize and Bauman, Katherine D. and Baunach, Martin and Beemelmanns, Christine and Beman, J. Michael and Berlanga-Clavero, María Victoria and Blacutt, Alex A. and Bode, Helge B. and Boullie, Anne and Brejnrod, Asker and Bugni, Tim S. and Calteau, Alexandra and Cao, Liu and Carrión, Víctor J. and Castelo-Branco, Raquel and Chanana, Shaurya and Chase, Alexander B. and Chevrette, Marc G. and Costa-Lotufo, Leticia V. and Crawford, Jason M. and Currie, Cameron R. and Cuypers, Bart and Dang, Tam and de Rond, Tristan and Demko, Alyssa M. and Dittmann, Elke and Du, Chao and Drozd, Christopher and Dujardin, Jean-Claude and Dutton, Rachel J. and Edlund, Anna and Fewer, David P. and Garg, Neha and Gauglitz, Julia M. and Gentry, Emily C. and Gerwick, Lena and Glukhov, Evgenia and Gross, Harald and Gugger, Muriel and Guillén Matus, Dulce G. and Helfrich, Eric J. N. and Hempel, Benjamin-Florian and Hur, Jae-Seoun and Iorio, Marianna and Jensen, Paul R. and Kang, Kyo Bin and Kaysser, Leonard and Kelleher, Neil L. and Kim, Chung Sub and Kim, Ki Hyun and Koester, Irina and König, Gabriele M. and Leao, Tiago and Lee, Seoung Rak and Lee, Yi-Yuan and Li, Xuanji and Little, Jessica C. and Maloney, Katherine N. and Männle, Daniel and Martin H., Christian and McAvoy, Andrew C. and Metcalf, Willam W. and Mohimani, Hosein and Molina-Santiago, Carlos and Moore, Bradley S. and Mullowney, Michael W. and Muskat, Mitchell and Nothias, Louis-Félix and O'Neill, Ellis C. and Parkinson, Elizabeth I. and Petras, Daniel and Piel, Jörn and Pierce, Emily C. and Pires, Karine and Reher, Raphael and Romero, Diego and Roper, M. Caroline and Rust, Michael and Saad, Hamada and Saenz, Carmen and Sanchez, Laura M. and Sørensen, Søren Johannes and Sosio, Margherita and Süssmuth, Roderich D. and Sweeney, Douglas and Tahlan, Kapil and Thomson, Regan J. and Tobias, Nicholas J. and Trindade-Silva, Amaro E. and van Wezel, Gilles P. and Wang, Mingxun and Weldon, Kelly C. and Zhang, Fan and Ziemert, Nadine and Duncan, Katherine R. and Crüsemann, Max and Rogers, Simon and Dorrestein, Pieter C. and Medema, Marnix H. and van der Hooft, Justin J. J. (2021 ) A community resource for paired genomic and metabolomic data mining. Nature Chemical Biology , 17 (4). pp. 363-368. ISSN 1552-4450
الإتاحة: https://doi.org/10.1038/s41589-020-00724-zTest
https://strathprints.strath.ac.uk/77536Test/
https://strathprints.strath.ac.uk/77536/1/Schorn_etal_NCB_2021_A_community_resource_for_paired_genomic_and_metabolomic.pdfTest -
7دورية أكاديمية
المؤلفون: Castelo-Branco, Raquel, Verhoeven, Stefan, Ridder, Lars, Huber, Florian, Acharya, Deepa D., Aksenov, Alexander A., Aleti, Gajender, Moghaddam, Jamshid Amiri, Aron, Allegra T., Aziz, Saefuddin, Bauermeister, Anelize, Bauman, Katherine D., Baunach, Martin, Beemelmanns, Christine, Beman, J. Michael, Berlanga-Clavero, Maria Victoria, Blacutt, Alex A., Bode, Helge B., Boullie, Anne, Brejnrod, Asker, Bugni, Tim S., Calteau, Alexandra, Cao, Liu, Carrion, Victor J., Chanana, Shaurya, Chase, Alexander B., Chevrette, Marc G., Costa-Lotufo, Leticia V., Crawford, Jason M., Currie, Cameron R., Cuypers, Bart, Dang, Tam, de Rond, Tristan, Demko, Alyssa M., Dittmann, Elke, Du, Chao, Drozd, Christopher, Dujardin, Jean-Claude, Dutton, Rachel J., Edlund, Anna, Fewer, David P., Garg, Neha, Gauglitz, Julia M., Gentry, Emily C., Gerwick, Lena, Glukhov, Evgenia, Gross, Harald, Gugger, Muriel, Guillen Matus, Dulce G., Helfrich, Eric J. N., Hempel, Benjamin-Florian, Hur, Jae-Seoun, Iorio, Marianna, Jensen, Paul R., Kang, Kyo Bin, Kaysser, Leonard, Kelleher, Neil L., Kim, Chung Sub, Kim, Ki Hyun, Koester, Irina, Koenig, Gabriele M., Leao, Tiago, Lee, Seoung Rak, Lee, Yi-Yuan, Li, Xuanji, Little, Jessica C., Maloney, Katherine N., Maennle, Daniel, Martin H., Christian, McAvoy, Andrew C., Metcalf, Willam W., Mohimani, Hosein, Molina-Santiago, Carlos, Moore, Bradley S., Mullowney, Michael W., Muskat, Mitchell, Nothias, Louis-Felix, O'Neill, Ellis C., Parkinson, Elizabeth I., Petras, Daniel, Piel, Jorn, Pierce, Emily C., Pires, Karine, Reher, Raphael, Romero, Diego, Roper, M. Caroline, Rust, Michael, Saad, Hamada, Saenz, Carmen, Sanchez, Laura M., Sorensen, Soren Johannes, Sosio, Margherita, Sussmuth, Roderich D., Sweeney, Douglas, Tahlan, Kapil, Thomson, Regan J., Tobias, Nicholas J., Trindade-Silva, Amaro E., van Wezel, Gilles P., Wang, Mingxun, Weldon, Kelly C., Zhang, Fan, Ziemert, Nadine, Duncan, Katherine R., Cruesemann, Max, Rogers, Simon, Dorrestein, Pieter C., Medema, Marnix H., van der Hooft, Justin J. J.
المساهمون: Department of Food and Nutrition, Department of Microbiology, Helsinki Institute of Sustainability Science (HELSUS), Microbial Natural Products
مصطلحات موضوعية: 1182 Biochemistry, cell and molecular biology
وصف الملف: application/pdf
العلاقة: The research reported in this publication was supported by an ASDI eScience Grant (ASDI.2017.030) from the Netherlands eScience Center (to J.J.J.v.d.H. and M.H.M.), a National Institutes of Health (NIH) Genome to Natural Products Network supplementary award (no. U01GM110706 to M.H.M.), a Wageningen Graduate School Postdoc Talent Program fellowship (to M.A.S.), a Marie Sklodowska-Curie Individual Fellowship from the European Union (MSCA-IF-EF-ST-897121 to M.A.S.), the National Science Foundation (NSF) (1817955 to L.M.S. and 1817887 to R.J.D.), a Fundaçao para a Ciencia e Tecnologia (FCT) fellowship (SFRH/BD/136367/2018 to R.C.B.), the National Cancer Institute of the NIH (award no. F32CA221327 to M.W.M.), the University of California, San Diego, Scripps Institution of Oceanography, and two grant from the NIH (Awards GM118815 and 107550 to L.G.), and the National Center for Complementary and Integrative Health of the NIH (award no. R01AT009143 to R.J.T. and N.L.K.).; Castelo-Branco , R , Verhoeven , S , Ridder , L , Huber , F , Acharya , D D , Aksenov , A A , Aleti , G , Moghaddam , J A , Aron , A T , Aziz , S , Bauermeister , A , Bauman , K D , Baunach , M , Beemelmanns , C , Beman , J M , Berlanga-Clavero , M V , Blacutt , A A , Bode , H B , Boullie , A , Brejnrod , A , Bugni , T S , Calteau , A , Cao , L , Carrion , V J , Castelo-Branco , R , Chanana , S , Chase , A B , Chevrette , M G , Costa-Lotufo , L V , Crawford , J M , Currie , C R , Cuypers , B , Dang , T , de Rond , T , Demko , A M , Dittmann , E , Du , C , Drozd , C , Dujardin , J-C , Dutton , R J , Edlund , A , Fewer , D P , Garg , N , Gauglitz , J M , Gentry , E C , Gerwick , L , Glukhov , E , Gross , H , Gugger , M , Guillen Matus , D G , Helfrich , E J N , Hempel , B-F , Hur , J-S , Iorio , M , Jensen , P R , Kang , K B , Kaysser , L , Kelleher , N L , Kim , C S , Kim , K H , Koester , I , Koenig , G M , Leao , T , Lee , S R , Lee , Y-Y , Li , X , Little , J C , Maloney , K N , Maennle , D , Martin H. , C , McAvoy , A C , Metcalf , W W , Mohimani , H , Molina-Santiago , C , Moore , B S , Mullowney , M W , Muskat , M , Nothias , L-F , O'Neill , E C , Parkinson , E I , Petras , D , Piel , J , Pierce , E C , Pires , K , Reher , R , Romero , D , Roper , M C , Rust , M , Saad , H , Saenz , C , Sanchez , L M , Sorensen , S J , Sosio , M , Sussmuth , R D , Sweeney , D , Tahlan , K , Thomson , R J , Tobias , N J , Trindade-Silva , A E , van Wezel , G P , Wang , M , Weldon , K C , Zhang , F , Ziemert , N , Duncan , K R , Cruesemann , M , Rogers , S , Dorrestein , P C , Medema , M H & van der Hooft , J J J 2021 , ' A community resource for paired genomic and metabolomic data mining ' , Nature Chemical Biology , vol. 17 , pp. 363-368 . https://doi.org/10.1038/s41589-020-00724-zTest; ORCID: /0000-0003-3978-4845/work/96622851; f5a30990-bc94-4c71-ae00-3d5a3129504b; http://hdl.handle.net/10138/332269Test; 000618175000001
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8دورية أكاديمية
المؤلفون: Jensen, Lars Juhl, Huber, Florian, Ridder, Lars, Verhoeven, Stefan, Spaaks, Jurriaan H., Diblen, Faruk, Rogers, Simon, van der Hooft, Justin J. J.
وصف الملف: text
العلاقة: http://eprints.gla.ac.uk/234462/1/234462.pdfTest; Jensen, L. J., Huber, F., Ridder, L., Verhoeven, S., Spaaks, J. H., Diblen, F., Rogers, S. and van der Hooft, J. J. J. (2021) Spec2Vec: improved mass spectral similarity scoring through learning of structural relationships. PLoS Computational Biology , 17(2), e1008724. (doi:10.1371/journal.pcbi.1008724 ) (PMID:33591968) (PMCID:PMC7909622)
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9دورية أكاديمية
المؤلفون: Renaud, Nicolas, Geng, Cunliang, Georgievska, Sonja, Ambrosetti, Francesco, Ridder, Lars, Marzella, Dario F., Réau, Manon F., Bonvin, Alexandre M. J. J., Xue, Li C.
المساهمون: Netherlands eScience Center, SURF Open Lab “Machine learning enhanced HPC applications” grant, Radboud Universitair Medisch Centrum, EC | Horizon 2020 Framework Programme
المصدر: Nature Communications ; volume 12, issue 1 ; ISSN 2041-1723
مصطلحات موضوعية: General Physics and Astronomy, General Biochemistry, Genetics and Molecular Biology, General Chemistry, Multidisciplinary
الإتاحة: https://doi.org/10.1038/s41467-021-27396-0Test
https://www.nature.com/articles/s41467-021-27396-0.pdfTest
https://www.nature.com/articles/s41467-021-27396-0Test -
10دورية أكاديمية
المؤلفون: Celebi, Remzi, Moreira, Joao Rebelo, Hassan, Ahmed A., Ayyar, Sandeep, Ridder, Lars, Kuhn, Tobias, Dumontier, Michel
المصدر: Celebi , R , Moreira , J R , Hassan , A A , Ayyar , S , Ridder , L , Kuhn , T & Dumontier , M 2020 , ' Towards FAIR protocols and workflows : The OpenPREDICT use case ' , PeerJ Computer Science , vol. 6 , 281 , pp. 1-29 . https://doi.org/10.7717/PEERJ-CS.281Test
مصطلحات موضوعية: Drug repurposing, FAIR data principles, FAIR workflows, Ontology-driven healthcare, Reproducibility, Research object, Scientific workflows and protocols, Semantic web
الإتاحة: https://doi.org/10.7717/PEERJ-CS.281Test
https://research.vu.nl/en/publications/ec2f326f-1b16-4e81-b8e1-2d0a178119fcTest
https://hdl.handle.net/1871.1/ec2f326f-1b16-4e81-b8e1-2d0a178119fcTest
http://www.scopus.com/inward/record.url?scp=85092652339&partnerID=8YFLogxKTest
http://www.scopus.com/inward/citedby.url?scp=85092652339&partnerID=8YFLogxKTest